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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041678 ID=TCONS_00041678|Name=TCONS_00041678|organism=Clytia hemisphaerica|type=transcript|length=2126bp
ACACGGTTTTTACCCATTAGgttcaataaaaagaaataaataccCCAATT
GCAGCAATCTGCAAGTGCCAATGCACGGTAGGCAAGATCTGCTATTTTAC
CTAATATGCATAGTAAATTTTGTCTGCTCGTACGTTGTTTTGGTATGTTA
CTTTTTTCTCTAGTACCCACTACAAAACAAGACATACATCTAGTAACTGT
AAATGTGGTCAGTTTGTTTTATGTTTCAGTGAATTACAAAGAATGCATGA
ACGCACAAAACGGACCTCGTGAAATAGTTGAGGCGAGTGTCAGGACTTCA
TTCTTTATATTGAagcaatttttttgaattaaaacagTACAAAGAAGGCA
TGATTGCACAACGGACCTCAATTAAGTTGAGATGAGTGTCAGATCTTCGG
TCTTTGTTTCCCAACCCCCAATTTTTTTACCGAAAAACTGATCATTAATT
TACGTTACACGatacattttttatcaaaagaaattaaacACCCCAATTGC
AGATTGGTATGGTAGGCAAATATAAATTTTGCCTGCTGGTACGTTGTTTT
GGTATGTTACTCTTTTCTCTGGTACCCACTACAAAACAAGACAGATCTAG
TAACTGTAAATGTGGtcagtttgttttattgtttcaGTGAATTACAAAGA
ATGCATGAACGCACAAAACGGACCTCGTNTTTTTGATCAAAAGAAATTAA
ACACCCTTTATtatgaaaacctgaaaaatttgTTAGTATGACATGGTTGA
TAACATTGCCTGGAAATATTGGGGAAAATTAAACAATTCTTCAATTGCAG
ATTGGCATTGTAGGCAAAGTCTGCTATCTTACCTAATATGCATAGTAAAT
TTTGCCTGCTGGTACGTTGTTTTGGTATGTTACTCTTTTCTCTGATACCC
ACTAATAAACAAGACATAAATCTTGTAACTGTAAATGTGGTCAGTTTGTT
TAACTGTTTCAGTGAATTACAAAGAATGCATGAACGCACAAAACGGACCT
CGTGAAATAGTTGAGGCGAGTGTCAGGACTTCATTCTTTATATTgaagca
attttttttaattaaaacagTACAAAGAAGGCATGATTGCACAACGGACC
TCAATTAAGTTGAGATGAGTGTCAGATCTTCAGTCTTTGTTTCCCAACTC
CCAATTTTGTACCGAAAAACTGATCATTAATTTACAATAAGTGCAGATAC
CTTTTTGATCAAAAGAAATTAAACACACTTTACTATGAAAACTACCTTAA
AAAGGAATGAAATCACTCTCTGCAAAGATCAGGAGTGTGAATATGATTAA
ATACTTAGTGCGCAGCAAAACATACGGTTTTCATTTAAAGCTAcgatatt
tagaattttttactGTTTGTAATGGTTTTTTCTATTGATTTTAGAAGAAC
GACTAACAGCTTGGCCTGAATTgggctttttaaaaaaaaatttatacagg
cgtattgacgaactttttcagtaacccccctggaaattttgaataacaag
ttatcccctggaaattagggGGTAGACCCCTCTGGGAAGTGAAATCTTGT
GAAAAAGGGGCTGGAAAACAACTATTGATGTCAGTTTATGAAgagagaac
cccctggaaaccttcAATAACCCCAATGAACAACCTTCAATGAacaaaaa
ccccttggaaaTAGCCCATTTTTCCCGCATACATGACCCAAACTGGCCGC
CTATGTCCACAACATGTTTTTGAAAGcgaaaatgtaaaattttggtGGCC
AAAGATTGGCCAATACAGTGGAACTGTATTGACTACATTGCAGAATTCTT
AAACAATGAGAAAAGTCCTCAGAAGTCCTTTTTGAACTGCAAAAATATAA
CTGTGATTGTAATGCTTTTTAATCATTGGCATAGCAAGATCATAGTGGAA
TCAGGGGAAATTTCACAAAGACGATATGAGATACAGTTCAAAAATATTAC
aaggaaaagaaatattaataaACTTACAACACTCCAACTGTTGATATCTT
GTTTCTTTTACACAACAACTGCTTCTTTCTGTAAATCTCTGCTTTTGTCA
GCTTCCACTTTTCGCTCTGAATTTTAAATTCGTGAGAACTTTTCGGCACA
TGTGCAGAAATGAAATATTATTATCC Run BLAST on NCBI transcript from alignment at sc0002965:11513..15431- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041678 ID=TCONS_00041678|Name=TCONS_00041678|organism=Clytia hemisphaerica|type=transcript|length=3919bp|location=Sequence derived from alignment at sc0002965:11513..15431- (Clytia hemisphaerica)
ACACGGTTTTTACCCATTAGGTTCAATAAAAAGAAATAAATACCCCAATT
GCAGCAATCTGCAAGTGCCAATGCACGGTAGGCAAGATCTGCTATTTTAC
CTAATATGCATAGTAAATTTTGTCTGCTCGTACGTTGTTTTGGTATGTTA
CTTTTTTCTCTAGTACCCACTACAAAACAAGACATACATCTAGTAACTGT
AAATGTGGTCAGTTTGTTTTATGTTTCAGTGAATTACAAAGAATGCATGA
ACGCACAAAACGGACCTCGTGAAATAGTTGAGGCGAGTGTCAGGACTTCA
TTCTTTATATTGAAGCAATTTTTTTGAATTAAAACAGTACAAAGAAGGCA
TGATTGCACAACGGACCTCAATTAAGTTGAGATGAGTGTCAGATCTTCGG
TCTTTGTTTCCCAACCCCCAATTTTTTTACCGAAAAACTGATCATTAATT
TACGTTACACGGTTTTTACCCATTAGGTTCAATAAAAAGAAATAAATACC
CCAATTGCAGCAATCTGCAAGTGCCAATGTACGGTAGGCAAGATCTGCTA
TTATACCTAATATGCATAGTAAATTTTGTCTGCTCGTACGTTGTTTTGGT
ATGTTACTTTTTTCTCTAGTACCCACTACAAAACAAGACATACATCTAGT
AACTGTAAATGTGGTCAGTTTGTTTTATGTTTCAGTGAATTACAAAGAAT
GCATGAACGCACAAAACGGACCTCGTGAAATAGTTGAGGCGAGTGTCAGG
ACTTCATTCTTTATATTGAAGCAATTTTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAACAGTACAAAGAAGGCA
TGATTGCACAACGGACCTCAATTAAGTTGAGATGAGTGTCAGATCTTCAG
TCTTTGTTTCCCAACCCCCAATTTGTTACTGAAAAACTGATCATTAAGTT
ACATTATATACATGGTTTTACCCATTAAGTTCAGATACCTTTTTGATCAA
AAGAAATTAAACACCCTTTATTATGAAAACCTGAAAAATTTGTTAGTATG
ACATGGTTGATAACATTGCCTGGAAATATTGGGGAAAATTAAACAATTCT
TCAATTGCAGATTGGCATTGTAGGCAAAGTCTGCTATCTTACCTAATATG
CATAGTAAATTTTGCCTGCTGGTACGTTGTTTTGGTATGTTACTCTTTTC
TCTGATACCCACTAATAAACAAGACATAAATCTTGTAACTGTAAATGTGG
TCAGTTTGTTTAATTGTTTCAGTGAATTACAAAGAATGCATGAACACACA
AAACGGACCTCGTGAAATAGTTGAGGCGAGTGTCAGGACTTCATTCTTTA
TATTGAAGCAATTTTTTTGAATTAAAACAGTACAAAGAAGGCATGATTGC
ACAACGGACCTCAAATAAGTTGAGATGAGTGTCAGATCTTCAGTCTTTGT
TTCCCAACCCCCAATTTTTTACCGAAAAACTGATCATTAATTTACATTAC
ACGGTTTTTACCCATTAGGTTCAGATACATTTTTGATAAAAGGAAATAAA
TACCCCAATTGCAGATTATTGGCATGGTAGGCAAATAAATTTTATCTGCT
GGTACCTTGTTTTGGTATGTTACTTTCTTCTCTAGTACCCACTACAAAAC
AAGACATACATCTAGTAACTGTAAATGTGGTCAGTTTGTTTTATTGTTTC
AGTGAATTACAAAGAATGCATGAACGCACAAAACGGACCTCGTGAAATAG
TTGAGGCGAGTGTCAGGACTTCATTCTTTATATTGAAGCAAATTTTTTGA
ATTAAAACAGTACAAAGAAGGCATGATTGCACAACGGACCTCAAATAAGT
TGAGATGAGTGTCAGATCTTCAGTCTTTGTTTCCCAACCCCCAATTTTTT
ACCGAAAAACTGATCATTAATTTACATTACACGGTTTTTACCCATTAGGA
TCAGATACATTTTTTATCAAAAGAAATTAAACACCCCAATTGCAGATTGG
TATGGTAGGCAAATATAAATTTTGCCTGCTGGTACGTTGTTTTGGTATGT
TACTCTTTTCTCTGGTACCCACTACAAAACAAGACAGATCTAGTAACTGT
AAATGTGGTCAGTTTGTTTTATTGTTTCAGTGAATTACAAAGAATGCATG
AACGCACAAAACGGACCTCGTNTTTTTGATCAAAAGAAATTAAACACCCT
TTATTATGAAAACCTGAAAAATTTGTTAGTATGACATGGTTGATAACATT
GCCTGGAAATATTGGGGAAAATTAAACAATTCTTCAATTGCAGATTGGCA
TTGTAGGCAAAGTCTGCTATCTTACCTAATATGCATAGTAAATTTTGCCT
GCTGGTACGTTGTTTTGGTATGTTACTCTTTTCTCTGATACCCACTAATA
AACAAGACATAAATCTTGTAACTGTAAATGTGGTCAGTTTGTTTAACTGT
TTCAGTGAATTACAAAGAATGCATGAACGCACAAAACGGACCTCGTGAAA
TAGTTGAGGCGAGTGTCAGGACTTCATTCTTTATATTGAAGCAATTTTTT
TTAATTAAAACAGTACAAAGAAGGCATGATTGCACAACGGACCTCAATTA
AGTTGAGATGAGTGTCAGATCTTCAGTCTTTGTTTCCCAACTCCCAATTT
TGTACCGAAAAACTGATCATTAATTTACAATAAGTGCAGATACCTTTTTG
ATCAAAAGAAATTAAACACACTTTACTATGAAAACTACCTTAAAAAGGAA
TGAAATCACTCTCTGCAAAGATCAGGAGTGTGAATATGATTAAATACTTA
GTGCGCAGCAAAACATACGGTTTTCATTTAAAGCTACGATATTTAGAATT
TTTTACTGTTTGTAATGGTTTTTTCTATTGATTTTAGAAGAACGACTAAC
AGCTTGGCCTGAATTGGGCTTTTTAAAAAAAAATTTATACAGGCGTATTG
ACGAACTTTTTCAGTAACCCCCCTGGAAATTTTGAATAACAAGTTATCCC
CTGGAAATTAGGGGGTAGACCCCTCTGGGAAGTGAAATCTTGTGAAAAAG
GGGCTGGAAAACAACTATTGATGTCAGTTTATGAAGAGAGAACCCCCTGG
AAACCTTCAATAACCCCAATGAACAACCTTCAATGAACAAAAACCCCTTG
GAAATAGCCCATTTTTCCCGCATACATGACCCAAACTGGCCGCCTATGTC
CACAACATGTTTTTGAAAGCGAAAATGTAAAATTTTGGTGGCCAAAGATT
GGCCAATACAGTGGAACTGTATTGACTACATTGCAGAATTCTTAAACAAT
GAGAAAAGTCCTCAGAAGTCCTTTTTGAACTGCAAAAATATAACTGTGAT
TGTAATGCTTTTTAATCATTGGCATAGCAAGATCATAGTGGAATCAGGGG
AAATTTCACAAAGACGATATGAGATACAGTTCAAAAATATTACAAGGAAA
AGAAATATTAATAAACTTACAACACTCCAACTGTTGATATCTTGTTTCTT
TTACACAACAACTGCTTCTTTCTGTAAATCTCTGCTTTTGTCAGCTTCCA
CTTTTCGCTCTGAATTTTAAATTCGTGAGAACTTTTCGGCACATGTGCAG
AAATGAAATATTATTATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041678-exon-sc0002965-1575043694:14971..15431 | TCONS_00041678-exon-sc0002965-1575043694:14971..15431 | Clytia hemisphaerica | exon |
| TCONS_00041678-exon-sc0002965-1575043694:11513..13177 | TCONS_00041678-exon-sc0002965-1575043694:11513..13177 | Clytia hemisphaerica | exon |
| TCONS_00041678-exon-sc0002965-1510915933:14971..15431 | TCONS_00041678-exon-sc0002965-1510915933:14971..15431 | Clytia hemisphaerica | exon |
| TCONS_00041678-exon-sc0002965-1510915933:11513..13177 | TCONS_00041678-exon-sc0002965-1510915933:11513..13177 | Clytia hemisphaerica | exon |
| TCONS_00041678-exon-sc0002965-1491911889:14971..15431 | TCONS_00041678-exon-sc0002965-1491911889:14971..15431 | Clytia hemisphaerica | exon |
| TCONS_00041678-exon-sc0002965-1491911889:11513..13177 | TCONS_00041678-exon-sc0002965-1491911889:11513..13177 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002965 | supercontig | sc0002965:11513..15431 - |
Blast
The following BLAST results are available for this feature:
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