TCONS_00041676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041676
Unique NameTCONS_00041676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2026

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041676 ID=TCONS_00041676|Name=TCONS_00041676|organism=Clytia hemisphaerica|type=transcript|length=2026bp
AAAGAAGGCATGATTGCACAACGGACCTCAATTAAGTTGAGATGAGTGTC
AGATCTTCAGTCTTTGTTTCCCAACCCCCAATTTGTTACTGAAAAACTGA
TCATTAAGTTACATTATATACATGGTTTTACCCATTAAGTTCAGATACCT
TTTTGATCAAAAGAAATTAAACACCCTTTATtatgaaaacctgaaaaatt
tgTTAGTATGACATGGTTGATAACATTGCCTGGAAATATTGGGGAAAATT
AAACAATTCTTCAATTGCAGATTGGCATTGTAGGCAAAGTCTGCTATCTT
ACCTAATATGCATAGTAAATTTTGCCTGCTGGTACGTTGTTTTGGTATGT
TACTCTTTTCTCTGATACCCACTAATAAACAAGACATAAATCTTGTAACT
GTAAATGTGGTCAGTTTGTTTAATTGTTTCAGTGAATTACAAAGAATGCA
TGAACACACAAAACGGACCTCGTGAAATAGTTGAGGCGAGTGTCAGGACT
TCATTCTTTATATTGAagcaatttttttgaattaaaacagTACAAAGAAG
GCATGATTGCACAACGGACCTCAAATAAGTTGAGATGAGTGTCAGATCTT
CAGTCTTTGTTTCCCAACCCCCAATTTTTTACCGAAAAACTGATCATTAA
TTTACATTACACGGTTTTTACCCATTAGGTTCAGATACATTTTTGATAAA
AGGAAATAAATACCCCAATTGCAGATTATTGGCATGGTAGGCAAATAAAT
TTTATCTGCTGGTACCTTGTTTTGGTATGTTACTTTCTTCTCTAGTACCC
ACTACAAAACAAGACATACATCTAGTAACTGTAAATGTGGtcagtttgtt
ttattgtttcaGTGAATTACAAAGAATGCATGAACGCACAAAACGGACCT
CGTGAAATAGTTGAGGCGAGTGTCAGGACTTCATTCTTTATATTGaagca
aattttttgaattaaaacagTACAAAGAAGGCATGATTGCACAACGGACC
TCAAATAAGTTGAGATGAGTGTCAGATCTTCAGTCTTTGTTTCCCAACCC
CCAATTTTTTACCGAAAAACTGATCATTAATTTACAATAAGTGCAGATAC
CTTTTTGATCAAAAGAAATTAAACACACTTTACTATGAAAACTACCTTAA
AAAGGAATGAAATCACTCTCTGCAAAGATCAGGAGTGTGAATATGATTAA
ATACTTAGTGCGCAGCAAAACATACGGTTTTCATTTAAAGCTAcgatatt
tagaattttttactGTTTGTAATGGTTTTTTCTATTGATTTTAGAAGAAC
GACTAACAGCTTGGCCTGAATTgggctttttaaaaaaaaatttatacagg
cgtattgacgaactttttcagtaacccccctggaaattttgaataacaag
ttatcccctggaaattagggGGTAGACCCCTCTGGGAAGTGAAATCTTGT
GAAAAAGGGGCTGGAAAACAACTATTGATGTCAGTTTATGAAgagagaac
cccctggaaaccttcAATAACCCCAATGAACAACCTTCAATGAacaaaaa
ccccttggaaaTAGCCCATTTTTCCCGCATACATGACCCAAACTGGCCGC
CTATGTCCACAACATGTTTTTGAAAGcgaaaatgtaaaattttggtGGCC
AAAGATTGGCCAATACAGTGGAACTGTATTGACTACATTGCAGAATTCTT
AAACAATGAGAAAAGTCCTCAGAAGTCCTTTTTGAACTGCAAAAATATAA
CTGTGATTGTAATGCTTTTTAATCATTGGCATAGCAAGATCATAGTGGAA
TCAGGGGAAATTTCACAAAGACGATATGAGATACAGTTCAAAAATATTAC
aaggaaaagaaatattaataaACTTACAACACTCCAACTGTTGATATCTT
GTTTCTTTTACACAACAACTGCTTCTTTCTGTAAATCTCTGCTTTTGTCA
GCTTCCACTTTTCGCTCTGAATTTTAAATTCGTGAGAACTTTTCGGCACA
TGTGCAGAAATGAAATATTATTATCC
Run BLAST on NCBI

transcript from alignment at sc0002965:11513..14291-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041676 ID=TCONS_00041676|Name=TCONS_00041676|organism=Clytia hemisphaerica|type=transcript|length=2779bp|location=Sequence derived from alignment at sc0002965:11513..14291- (Clytia hemisphaerica)
AAAGAAGGCATGATTGCACAACGGACCTCAATTAAGTTGAGATGAGTGTC
AGATCTTCAGTCTTTGTTTCCCAACCCCCAATTTGTTACTGAAAAACTGA
TCATTAAGTTACATTATATACATGGTTTTACCCATTAAGTTCAGATACCT
TTTTGATCAAAAGAAATTAAACACCCTTTATTATGAAAACCTGAAAAATT
TGTTAGTATGACATGGTTGATAACATTGCCTGGAAATATTGGGGAAAATT
AAACAATTCTTCAATTGCAGATTGGCATTGTAGGCAAAGTCTGCTATCTT
ACCTAATATGCATAGTAAATTTTGCCTGCTGGTACGTTGTTTTGGTATGT
TACTCTTTTCTCTGATACCCACTAATAAACAAGACATAAATCTTGTAACT
GTAAATGTGGTCAGTTTGTTTAATTGTTTCAGTGAATTACAAAGAATGCA
TGAACACACAAAACGGACCTCGTGAAATAGTTGAGGCGAGTGTCAGGACT
TCATTCTTTATATTGAAGCAATTTTTTTGAATTAAAACAGTACAAAGAAG
GCATGATTGCACAACGGACCTCAAATAAGTTGAGATGAGTGTCAGATCTT
CAGTCTTTGTTTCCCAACCCCCAATTTTTTACCGAAAAACTGATCATTAA
TTTACATTACACGGTTTTTACCCATTAGGTTCAGATACATTTTTGATAAA
AGGAAATAAATACCCCAATTGCAGATTATTGGCATGGTAGGCAAATAAAT
TTTATCTGCTGGTACCTTGTTTTGGTATGTTACTTTCTTCTCTAGTACCC
ACTACAAAACAAGACATACATCTAGTAACTGTAAATGTGGTCAGTTTGTT
TTATTGTTTCAGTGAATTACAAAGAATGCATGAACGCACAAAACGGACCT
CGTGAAATAGTTGAGGCGAGTGTCAGGACTTCATTCTTTATATTGAAGCA
AATTTTTTGAATTAAAACAGTACAAAGAAGGCATGATTGCACAACGGACC
TCAAATAAGTTGAGATGAGTGTCAGATCTTCAGTCTTTGTTTCCCAACCC
CCAATTTTTTACCGAAAAACTGATCATTAATTTACATTACACGGTTTTTA
CCCATTAGGATCAGATACATTTTTTATCAAAAGAAATTAAACACCCCAAT
TGCAGATTGGTATGGTAGGCAAATATAAATTTTGCCTGCTGGTACGTTGT
TTTGGTATGTTACTCTTTTCTCTGGTACCCACTACAAAACAAGACAGATC
TAGTAACTGTAAATGTGGTCAGTTTGTTTTATTGTTTCAGTGAATTACAA
AGAATGCATGAACGCACAAAACGGACCTCGTNTTTTTGATCAAAAGAAAT
TAAACACCCTTTATTATGAAAACCTGAAAAATTTGTTAGTATGACATGGT
TGATAACATTGCCTGGAAATATTGGGGAAAATTAAACAATTCTTCAATTG
CAGATTGGCATTGTAGGCAAAGTCTGCTATCTTACCTAATATGCATAGTA
AATTTTGCCTGCTGGTACGTTGTTTTGGTATGTTACTCTTTTCTCTGATA
CCCACTAATAAACAAGACATAAATCTTGTAACTGTAAATGTGGTCAGTTT
GTTTAACTGTTTCAGTGAATTACAAAGAATGCATGAACGCACAAAACGGA
CCTCGTGAAATAGTTGAGGCGAGTGTCAGGACTTCATTCTTTATATTGAA
GCAATTTTTTTTAATTAAAACAGTACAAAGAAGGCATGATTGCACAACGG
ACCTCAATTAAGTTGAGATGAGTGTCAGATCTTCAGTCTTTGTTTCCCAA
CTCCCAATTTTGTACCGAAAAACTGATCATTAATTTACAATAAGTGCAGA
TACCTTTTTGATCAAAAGAAATTAAACACACTTTACTATGAAAACTACCT
TAAAAAGGAATGAAATCACTCTCTGCAAAGATCAGGAGTGTGAATATGAT
TAAATACTTAGTGCGCAGCAAAACATACGGTTTTCATTTAAAGCTACGAT
ATTTAGAATTTTTTACTGTTTGTAATGGTTTTTTCTATTGATTTTAGAAG
AACGACTAACAGCTTGGCCTGAATTGGGCTTTTTAAAAAAAAATTTATAC
AGGCGTATTGACGAACTTTTTCAGTAACCCCCCTGGAAATTTTGAATAAC
AAGTTATCCCCTGGAAATTAGGGGGTAGACCCCTCTGGGAAGTGAAATCT
TGTGAAAAAGGGGCTGGAAAACAACTATTGATGTCAGTTTATGAAGAGAG
AACCCCCTGGAAACCTTCAATAACCCCAATGAACAACCTTCAATGAACAA
AAACCCCTTGGAAATAGCCCATTTTTCCCGCATACATGACCCAAACTGGC
CGCCTATGTCCACAACATGTTTTTGAAAGCGAAAATGTAAAATTTTGGTG
GCCAAAGATTGGCCAATACAGTGGAACTGTATTGACTACATTGCAGAATT
CTTAAACAATGAGAAAAGTCCTCAGAAGTCCTTTTTGAACTGCAAAAATA
TAACTGTGATTGTAATGCTTTTTAATCATTGGCATAGCAAGATCATAGTG
GAATCAGGGGAAATTTCACAAAGACGATATGAGATACAGTTCAAAAATAT
TACAAGGAAAAGAAATATTAATAAACTTACAACACTCCAACTGTTGATAT
CTTGTTTCTTTTACACAACAACTGCTTCTTTCTGTAAATCTCTGCTTTTG
TCAGCTTCCACTTTTCGCTCTGAATTTTAAATTCGTGAGAACTTTTCGGC
ACATGTGCAGAAATGAAATATTATTATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025605XLOC_025605Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041676-exon-sc0002965-1575043694:13207..14291TCONS_00041676-exon-sc0002965-1575043694:13207..14291Clytia hemisphaericaexon
TCONS_00041676-exon-sc0002965-1575043694:11513..12453TCONS_00041676-exon-sc0002965-1575043694:11513..12453Clytia hemisphaericaexon
TCONS_00041676-exon-sc0002965-1510915933:13207..14291TCONS_00041676-exon-sc0002965-1510915933:13207..14291Clytia hemisphaericaexon
TCONS_00041676-exon-sc0002965-1510915933:11513..12453TCONS_00041676-exon-sc0002965-1510915933:11513..12453Clytia hemisphaericaexon
TCONS_00041676-exon-sc0002965-1491911889:13207..14291TCONS_00041676-exon-sc0002965-1491911889:13207..14291Clytia hemisphaericaexon
TCONS_00041676-exon-sc0002965-1491911889:11513..12453TCONS_00041676-exon-sc0002965-1491911889:11513..12453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002965supercontigsc0002965:11513..14291 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.933879	0.228951	0.352763	1.39675	3.54329	2.89051	2.88352	1.28459	1.65419	0.00244488	0.00285548	2.09375	1.10825	0.450358	1.63867	0.910463	1.17	1.99354	0.981104	0.322958	1.73718	2.60195	7.04946e-06	1.62243	1.89378	4.65254	1.70822	0.478516	1.32477	0.0274355
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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