TCONS_00041675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041675
Unique NameTCONS_00041675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2581

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041675 ID=TCONS_00041675|Name=TCONS_00041675|organism=Clytia hemisphaerica|type=transcript|length=2581bp
TTTCATTTCTGCACATGTGCCGAAAAGTTCTCACGAATTTAAAATTCAGA
GCGAAAAGTGGAAGCTGACAAAAGCAGAGATTTACAGAAAGAAGCAGTTG
TTGTGTAAAAGAAACAAGATATCAACAGTTGGAGTGTTGTAAGTttatta
atatttcttttccttGTAATATTTTTGAACTGTATCTCATATCGTCTTTG
TGAAATTTCCCCTGATTCCACTATGATCTTGCTATGCCAATGATTAAAAA
GCATTACAATCACAGTTATATTTTTGCAGTTCAAAAAGGACTTCTGAGGA
CTTTTCTCATTGTTTAAGAATTCTGCAATGTAGTCAATACAGTTCCACTG
TATTGGCCAATCTTTGGCCaccaaaattttacattttcgCTTTCAAAAAC
ATGTTGTGGACATAGGCGGCCAGTTTGGGTCATGTATGCGGGAAAAATGG
GCTAtttccaaggggtttttgtTCATTGAAGGTTGTTCATTGGGGTTATT
gaaggtttccagggggttctctcTTCATAAACTGACATCAATAGTTGTTT
TCCAGCCCCTTTTTCACAAGATTTCACTTCCCAGAGGGGTCTACCcccta
atttccaggggataacttgttattcaaaatttccaggggggttactgaaa
aagttcgtcaatacgcctgtataaatttttttttaaaaagcccAATTCAG
GCCAAGCTGTTAGTCGTTCTTCTAAAATCAATAGAAAAAACCATTACAAA
CagtaaaaaattctaaatatcgTAGCTTTAAATGAAAACCGTATGTTTTG
CTGCGCACTAAGTATTTAATCATATTCACACTCCTGATCTTTGCAGAGAG
TGATTTCATTCCTTTTTAAGGTAGTTTTCATAGTAAAGTGTGTTTAATTT
CTTTTGATCAAAAAGGTATCTGCACTTATTGTAAATTAATGATCAGTTTT
TCGGTACAAAATTGGGAGTTGGGAAACAAAGACTGAAGATCTGACACTCA
TCTCAACTTAATTGAGGTCCGTTGTGCAATCATGCCTTCTTTGTActgtt
ttaattaaaaaaaattgcttcAATATAAAGAATGAAGTCCTGACACTCGC
CTCAACTATTTCACGAGGTCCGTTTTGTGCGTTCATGCATTCTTTGTAAT
TCACTGAAACAGTTAAACAAACTGACCACATTTACAGTTACAAGATTTAT
GTCTTGTTTATTAGTGGGTATCAGAGAAAAGAGTAACATACCAAAACAAC
GTACCAGCAGGCAAAATTTACTATGCATATTAGGTAAGATAGCAGACTTT
GCCTACAATGCCAATCTGCAATTGAAGAATTGTTTAATTTTCCCCAATAT
TTCCAGGCAATGTTATCAACCATGTCATACTAAcaaatttttcaggtttt
cataATAAAGGGTGTTTAATTTCTTTTGATCAAAAANACGAGGTCCGTTT
TGTGCGTTCATGCATTCTTTGTAATTCACtgaaacaataaaacaaactga
CCACATTTACAGTTACTAGATCTGTCTTGTTTTGTAGTGGGTACCAGAGA
AAAGAGTAACATACCAAAACAACGTACCAGCAGGCAAAATTTATATTTGC
CTACCATACCAATCTGCAATTGGGGTgtttaatttcttttgataaaaaat
gtatCTGATCCTAATGGGTAAAAACCGTGTAATGTAAATTAATGATCAGT
TTTTCGGTAAAAAATTGGGGGTTGGGAAACAAAGACTGAAGATCTGACAC
TCATCTCAACTTATTTGAGGTCCGTTGTGCAATCATGCCTTCTTTGTAct
gttttaattcaaaaaatttgcttCAATATAAAGAATGAAGTCCTGACACT
CGCCTCAACTATTTCACGAGGTCCGTTTTGTGCGTTCATGCATTCTTTGT
AATTCACtgaaacaataaaacaaactgaCCACATTTACAGTTACTAGATG
TATGTCTTGTTTTGTAGTGGGTACTAGAGAAGAAAGTAACATACCAAAAC
AAGGTACCAGCAGATAAAATTTATTTGCCTACCATGCCAATAATCTGCAA
TTGGGGTATTTATTTCCTTTTATCAAAAATGTATCTGAACCTAATGGGTA
AAAACCGTGTAATGTAAATTAATGATCAGTTTTTCGGTAAAAAATTGGGG
GTTGGGAAACAAAGACTGAAGATCTGACACTCATCTCAACTTATTTGAGG
TCCGTTGTGCAATCATGCCTTCTTTGTActgttttaattcaaaaaaattg
ctTCAATATAAAGAATGAAGTCCTGACACTCGCCTCAACTATTTCACGAG
GTCCGTTTTGTGTGTTCATGCATTCTTTGTAATTCACTGAAACAATTAAA
CAAACTGACCACATTTACAGTTACTAGATGTATGTCTTGTTTTGTAGTGG
GTACTAGAGAAAAAAGTAACATACCAAAACAACGTACGAGCAGACAAAAT
TTACTATGCATATTAGGTAAAATAGCAGATCTTGCCTACCGTGCATTGGC
ACTTGCAGATTGCTGCAATTGGggtatttatttctttttattgaacCTAA
TGGGTAAAAACCGTGTAACGTAAATTAATGA
Run BLAST on NCBI

transcript from alignment at sc0002965:11524..15446+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041675 ID=TCONS_00041675|Name=TCONS_00041675|organism=Clytia hemisphaerica|type=transcript|length=3923bp|location=Sequence derived from alignment at sc0002965:11524..15446+ (Clytia hemisphaerica)
TTTCATTTCTGCACATGTGCCGAAAAGTTCTCACGAATTTAAAATTCAGA
GCGAAAAGTGGAAGCTGACAAAAGCAGAGATTTACAGAAAGAAGCAGTTG
TTGTGTAAAAGAAACAAGATATCAACAGTTGGAGTGTTGTAAGTttatta
atatttcttttccttGTAATATTTTTGAACTGTATCTCATATCGTCTTTG
TGAAATTTCCCCTGATTCCACTATGATCTTGCTATGCCAATGATTAAAAA
GCATTACAATCACAGTTATATTTTTGCAGTTCAAAAAGGACTTCTGAGGA
CTTTTCTCATTGTTTAAGAATTCTGCAATGTAGTCAATACAGTTCCACTG
TATTGGCCAATCTTTGGCCaccaaaattttacattttcgCTTTCAAAAAC
ATGTTGTGGACATAGGCGGCCAGTTTGGGTCATGTATGCGGGAAAAATGG
GCTAtttccaaggggtttttgtTCATTGAAGGTTGTTCATTGGGGTTATT
gaaggtttccagggggttctctcTTCATAAACTGACATCAATAGTTGTTT
TCCAGCCCCTTTTTCACAAGATTTCACTTCCCAGAGGGGTCTACCcccta
atttccaggggataacttgttattcaaaatttccaggggggttactgaaa
aagttcgtcaatacgcctgtataaatttttttttaaaaagcccAATTCAG
GCCAAGCTGTTAGTCGTTCTTCTAAAATCAATAGAAAAAACCATTACAAA
CagtaaaaaattctaaatatcgTAGCTTTAAATGAAAACCGTATGTTTTG
CTGCGCACTAAGTATTTAATCATATTCACACTCCTGATCTTTGCAGAGAG
TGATTTCATTCCTTTTTAAGGTAGTTTTCATAGTAAAGTGTGTTTAATTT
CTTTTGATCAAAAAGGTATCTGCACTTATTGTAAATTAATGATCAGTTTT
TCGGTACAAAATTGGGAGTTGGGAAACAAAGACTGAAGATCTGACACTCA
TCTCAACTTAATTGAGGTCCGTTGTGCAATCATGCCTTCTTTGTActgtt
ttaattaaaaaaaattgcttcAATATAAAGAATGAAGTCCTGACACTCGC
CTCAACTATTTCACGAGGTCCGTTTTGTGCGTTCATGCATTCTTTGTAAT
TCACTGAAACAGTTAAACAAACTGACCACATTTACAGTTACAAGATTTAT
GTCTTGTTTATTAGTGGGTATCAGAGAAAAGAGTAACATACCAAAACAAC
GTACCAGCAGGCAAAATTTACTATGCATATTAGGTAAGATAGCAGACTTT
GCCTACAATGCCAATCTGCAATTGAAGAATTGTTTAATTTTCCCCAATAT
TTCCAGGCAATGTTATCAACCATGTCATACTAAcaaatttttcaggtttt
cataATAAAGGGTGTTTAATTTCTTTTGATCAAAAANACGAGGTCCGTTT
TGTGCGTTCATGCATTCTTTGTAATTCACtgaaacaataaaacaaactga
CCACATTTACAGTTACTAGATCTGTCTTGTTTTGTAGTGGGTACCAGAGA
AAAGAGTAACATACCAAAACAACGTACCAGCAGGCAAAATTTATATTTGC
CTACCATACCAATCTGCAATTGGGGTgtttaatttcttttgataaaaaat
gtatCTGATCCTAATGGGTAAAAACCGTGTAATGTAAATTAATGATCAGT
TTTTCGGTAAAAAATTGGGGGTTGGGAAACAAAGACTGAAGATCTGACAC
TCATCTCAACTTATTTGAGGTCCGTTGTGCAATCATGCCTTCTTTGTAct
gttttaattcaaaaaatttgcttCAATATAAAGAATGAAGTCCTGACACT
CGCCTCAACTATTTCACGAGGTCCGTTTTGTGCGTTCATGCATTCTTTGT
AATTCACtgaaacaataaaacaaactgaCCACATTTACAGTTACTAGATG
TATGTCTTGTTTTGTAGTGGGTACTAGAGAAGAAAGTAACATACCAAAAC
AAGGTACCAGCAGATAAAATTTATTTGCCTACCATGCCAATAATCTGCAA
TTGGGGTATTTATTTCCTTTTATCAAAAATGTATCTGAACCTAATGGGTA
AAAACCGTGTAATGTAAATTAATGATCAGTTTTTCGGTAAAAAATTGGGG
GTTGGGAAACAAAGACTGAAGATCTGACACTCATCTCAACTTATTTGAGG
TCCGTTGTGCAATCATGCCTTCTTTGTActgttttaattcaaaaaaattg
ctTCAATATAAAGAATGAAGTCCTGACACTCGCCTCAACTATTTCACGAG
GTCCGTTTTGTGTGTTCATGCATTCTTTGTAATTCACTGAAACAATTAAA
CAAACTGACCACATTTACAGTTACAAGATTTATGTCTTGTTTATTAGTGG
GTATCAGAGAAAAGAGTAACATACCAAAACAACGTACCAGCAGGCAAAAT
TTACTATGCATATTAGGTAAGATAGCAGACTTTGCCTACAATGCCAATCT
GCAATTGAAGAATTGTTTAATTTTCCCCAATATTTCCAGGCAATGTTATC
AACCATGTCATACTAAcaaatttttcaggttttcataATAAAGGGTGTTT
AATTTCTTTTGATCAAAAAGGTATCTGAACTTAATGGGTAAAACCATGTA
TATAATGTAACTTAATGATCAGTTTTTCAGTAACAAATTGGGGGTTGGGA
AACAAAGACTGAAGATCTGACACTCATCTCAACTTAATTGAGGTCCGTTG
TGCAATCATGCCTTCTTTGTACTGTTTTAANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATTGCTTCAATATAAAG
AATGAAGTCCTGACACTCGCCTCAACTATTTCACGAGGTCCGTTTTGTGC
GTTCATGCATTCTTTGTAATTCACTGAAACATAAAACAAACTGACCACAT
TTACAGTTACTAGATGTATGTCTTGTTTTGTAGTGGGTACTAGAGAAAAA
AGTAACATACCAAAACAACGTACGAGCAGACAAAATTTACTATGCATATT
AGGTATAATAGCAGATCTTGCCTACCGTACATTGGCACTTGCAGATTGCT
GCAATTGGggtatttatttctttttattgaacCTAATGGGTAAAAACCGT
GTAACGTAAATTAATGATCAGTTTTTCGGTAAAAAAATTGGGGGTTGGGA
AACAAAGACCGAAGATCTGACACTCATCTCAACTTAATTGAGGTCCGTTG
TGCAATCATGCCTTCTTTGTActgttttaattcaaaaaaattgctTCAAT
ATAAAGAATGAAGTCCTGACACTCGCCTCAACTATTTCACGAGGTCCGTT
TTGTGCGTTCATGCATTCTTTGTAATTCACTGAAACATAAAACAAACTGA
CCACATTTACAGTTACTAGATGTATGTCTTGTTTTGTAGTGGGTACTAGA
GAAAAAAGTAACATACCAAAACAACGTACGAGCAGACAAAATTTACTATG
CATATTAGGTAAAATAGCAGATCTTGCCTACCGTGCATTGGCACTTGCAG
ATTGCTGCAATTGGggtatttatttctttttattgaacCTAATGGGTAAA
AACCGTGTAACGTAAATTAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025604XLOC_025604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041675-exon-sc0002965-1491911889:11524..13885TCONS_00041675-exon-sc0002965-1491911889:11524..13885Clytia hemisphaericaexon
TCONS_00041675-exon-sc0002965-1510915933:11524..13885TCONS_00041675-exon-sc0002965-1510915933:11524..13885Clytia hemisphaericaexon
TCONS_00041675-exon-sc0002965-1575043694:11524..13885TCONS_00041675-exon-sc0002965-1575043694:11524..13885Clytia hemisphaericaexon
TCONS_00041675-exon-sc0002965-1491911889:15228..15446TCONS_00041675-exon-sc0002965-1491911889:15228..15446Clytia hemisphaericaexon
TCONS_00041675-exon-sc0002965-1510915933:15228..15446TCONS_00041675-exon-sc0002965-1510915933:15228..15446Clytia hemisphaericaexon
TCONS_00041675-exon-sc0002965-1575043694:15228..15446TCONS_00041675-exon-sc0002965-1575043694:15228..15446Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002965supercontigsc0002965:11524..15446 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.727631	0.787772	0	0.314872	3.56059	1.93848	2.20992	1.79275	2.56478	0.930238	2.81761	0.479414	1.76682	2.79436	1.93488	2.93625	3.31789	2.8467	0.430607	1.22435	1.72487	0.633183	0.00317	1.12215	2.2	5.62276	0	0.117388	0.422738	0.096792
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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