TCONS_00041640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041640
Unique NameTCONS_00041640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041640 ID=TCONS_00041640|Name=TCONS_00041640|organism=Clytia hemisphaerica|type=transcript|length=311bp
TTCTAAACTTCTTTGTGGTTTCAGAAAAGGCCATAGCATTCAACATGCCA
TTTTAAATATGATCAGACAATGGCAAAGTGCTACAGCAAACAATTTAAAA
GTGGGAGCGGTCTTGATTGACTTGTCGAAAGCCTTTGATTGCTTGCCTCA
TAATCTACTTCTTGCAAAACTCTCTGCTTACGGACTCAGTGAGAGTGCTG
TTAAACTAATGCACAGTTATCTCAGCAATCGAAAGCATAGAGTTCGTGTA
GGGTCGCATCTAAGTTCATGGCTTGATATCTTACTtggggtacctcaagg
ctcTATTCTAG
Run BLAST on NCBI

protein sequence of TCONS_00041640-protein

>TCONS_00041640-protein ID=TCONS_00041640-protein|Name=TCONS_00041640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
SKLLCGFRKGHSIQHAILNMIRQWQSATANNLKVGAVLIDLSKAFDCLPH
NLLLAKLSAYGLSESAVKLMHSYLSNRKHRVRVGSHLSSWLDILLGVPQG
SIL
Run BLAST on NCBI

transcript from alignment at sc0002949:3968..4278

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041640 ID=TCONS_00041640|Name=TCONS_00041640|organism=Clytia hemisphaerica|type=transcript|length=311bp|location=Sequence derived from alignment at sc0002949:3968..4278 (Clytia hemisphaerica)
CTAGAATAgagccttgaggtaccccaAGTAAGATATCAAGCCATGAACTT
AGATGCGACCCTACACGAACTCTATGCTTTCGATTGCTGAGATAACTGTG
CATTAGTTTAACAGCACTCTCACTGAGTCCGTAAGCAGAGAGTTTTGCAA
GAAGTAGATTATGAGGCAAGCAATCAAAGGCTTTCGACAAGTCAATCAAG
ACCGCTCCCACTTTTAAATTGTTTGCTGTAGCACTTTGCCATTGTCTGAT
CATATTTAAAATGGCATGTTGAATGCTATGGCCTTTTCTGAAACCACAAA
GAAGTTTAGAA

Coding sequence (CDS) from alignment at sc0002949:3968..4278

>TCONS_00041640 ID=TCONS_00041640|Name=TCONS_00041640|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0002949:3968..4278 (Clytia hemisphaerica)
TAGAATAgagccttgaggtaccccaAGTAAGATATCAAGCCATGAACTTA
GATGCGACCCTACACGAACTCTATGCTTTCGATTGCTGAGATAACTGTGC
ATTAGTTTAACAGCACTCTCACTGAGTCCGTAAGCAGAGAGTTTTGCAAG
AAGTAGATTATGAGGCAAGCAATCAAAGGCTTTCGACAAGTCAATCAAGA
CCGCTCCCACTTTTAAATTGTTTGCTGTAGCACTTTGCCATTGTCTGATC
ATATTTAAAATGGCATGTTGAATGCTATGGCCTTTTCTGAAACCACAAAG
AAGTTTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025573XLOC_025573Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041640-proteinTCONS_00041640-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041640-exon-sc0002949-1491911889:3968..4278TCONS_00041640-exon-sc0002949-1491911889:3968..4278Clytia hemisphaericaexon
TCONS_00041640-exon-sc0002949-1510915933:3968..4278TCONS_00041640-exon-sc0002949-1510915933:3968..4278Clytia hemisphaericaexon
TCONS_00041640-exon-sc0002949-1575043694:3968..4278TCONS_00041640-exon-sc0002949-1575043694:3968..4278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002949supercontigsc0002949:3968..4278 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.482823	3.70512	0.894015	0	0.29299	0.72583	0.352254	0	0	0	0.197429	0	0	0	0	0	0	0	0.398652	0	0	0.999476	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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