TCONS_00041639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041639
Unique NameTCONS_00041639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length627

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041639 ID=TCONS_00041639|Name=TCONS_00041639|organism=Clytia hemisphaerica|type=transcript|length=627bp
NGTGATGCTAACCACCCCCATTATCTGAAAGTTGAGTTTTGTGATCAAAG
TAAGGGTCTTCGATCCACAGATAAAGAATCTTTGGTCAAAGTTGTAAATG
ATGGCACTTTCCAATGTCAGGCACGGTGTTATGATGATTTGCCGGAAAAT
ATTAAATCTTTAGAAACTCTAGATGACTCTTTAATTCAGAggcaaagaaa
tttattttgacaaatCATTAGCTCGCTCTTTGTCTCTATGATCATATTTT
TTAGCTTAGAATTCTGTCCTTTTTCTagattcaattttttataccaattt
ctGTCACTATTACAACACTTCGACCTTTGATCCCCAATTCCATTCTTACA
TTACTATCCTATTCTAGCAATCTTATGCCTATTTCAGTGATTTGAGTTTT
GTGTTCTCTTTTGCTATTTTAAGTTAATAATTTATCTtaatttatcatta
ttttatttttcttagatCTTAGATTAactaaatatatatatattttttat
cacaaaatttttttgctccTTCAGGCAGATATACACATTTAGACCTTTTC
AACCACTTTAGACTCTTTGCCATTTACTCAATATACTCATTACTCAACTC
CGGTAGTTTCACTACTCTCAAGTCTTC
Run BLAST on NCBI

transcript from alignment at sc0002948:20033..20659

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041639 ID=TCONS_00041639|Name=TCONS_00041639|organism=Clytia hemisphaerica|type=transcript|length=627bp|location=Sequence derived from alignment at sc0002948:20033..20659 (Clytia hemisphaerica)
GAAGACTTGAGAGTAGTGAAACTACCGGAGTTGAGTAATGAGTATATTGA
GTAAATGGCAAAGAGTCTAAAGTGGTTGAAAAGGTCTAAATGTGTATATC
TGCCTGAAggagcaaaaaaattttgtgataaaaaatatatatatatttag
tTAATCTAAGatctaagaaaaataaaataatgataaattaAGATAAATTA
TTAACTTAAAATAGCAAAAGAGAACACAAAACTCAAATCACTGAAATAGG
CATAAGATTGCTAGAATAGGATAGTAATGTAAGAATGGAATTGGGGATCA
AAGGTCGAAGTGTTGTAATAGTGACagaaattggtataaaaaattgaatc
tAGAAAAAGGACAGAATTCTAAGCTAAAAAATATGATCATAGAGACAAAG
AGCGAGCTAATGatttgtcaaaataaatttctttgccTCTGAATTAAAGA
GTCATCTAGAGTTTCTAAAGATTTAATATTTTCCGGCAAATCATCATAAC
ACCGTGCCTGACATTGGAAAGTGCCATCATTTACAACTTTGACCAAAGAT
TCTTTATCTGTGGATCGAAGACCCTTACTTTGATCACAAAACTCAACTTT
CAGATAATGGGGGTGGTTAGCATCACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025572XLOC_025572Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041639-exon-sc0002948-1491911889:20033..20659TCONS_00041639-exon-sc0002948-1491911889:20033..20659Clytia hemisphaericaexon
TCONS_00041639-exon-sc0002948-1510915933:20033..20659TCONS_00041639-exon-sc0002948-1510915933:20033..20659Clytia hemisphaericaexon
TCONS_00041639-exon-sc0002948-1575043694:20033..20659TCONS_00041639-exon-sc0002948-1575043694:20033..20659Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002948supercontigsc0002948:20033..20659 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.607089	0.993198	0.912538	0.291983	0.743953	0	0.327361	0.612942	0.643703	0.592847	0.515938	0.289081	0.225791	0	0.149236	0.316761	1.05871	0.40522	0.180448	0.0944129	0.874064	1.30666	0.681212	0.395766	0.332834	0.262707	1.27075	0.131702	0.389353	0.287939
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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