TCONS_00041598 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041598
Unique NameTCONS_00041598
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041598 ID=TCONS_00041598|Name=TCONS_00041598|organism=Clytia hemisphaerica|type=transcript|length=633bp
ATTGACTGAGAAGAATATCGATTGTGGAATTATTGTAGCTTTTCTTAGCA
TCAATAATGCAACTATTATATGCAGCTGtctaactttttcattgatttca
ctGCTTCGCTGCTTTAATATAAAACGACCTTTTCAACACATCCCAACAAA
ACTTGTTTATGTCACCATTGTATGCATCGCTGTCTTTAGCATTTCAATAG
CCTTGGTACTTGCTTGGCAATACAAAAATATGAGACAGGAAACATTCCAA
AAGATCCAACTTTTGACTTCTCTGACAATGTTTTTGTTGGTGgatttcat
tctttttataaatataatttCTTATTTGCATCTTAAGAAGAACTCGCAAA
GATTTGAGATCGAAATGCAAACATATAATAACACTGAAACAAATACTCCA
CGAAATACATCActggaaaataaaaagtcaGCTGGGAAAACTCTTCTTTT
AATATCTTTCTTCTATTCACTTTGTATGATGCCTTTTCCACTCTTTGTTA
TTTGGTCTCTGATTGATCGAACATTACTGGAATCATCCTTGTCAGTGAAG
TTTTTAAATTATTGTTACAATATTGTGATTCTCAATGGAGGAATCAATTC
AACAATTTATATTCTGcggaataagaaaataag
Run BLAST on NCBI

protein sequence of TCONS_00041598-protein

>TCONS_00041598-protein ID=TCONS_00041598-protein|Name=TCONS_00041598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
LTEKNIDCGIIVAFLSINNATIICSCLTFSLISLLRCFNIKRPFQHIPTK
LVYVTIVCIAVFSISIALVLAWQYKNMRQETFQKIQLLTSLTMFLLVDFI
LFINIISYLHLKKNSQRFEIEMQTYNNTETNTPRNTSLENKKSAGKTLLL
ISFFYSLCMMPFPLFVIWSLIDRTLLESSLSVKFLNYCYNIVILNGGINS
TIYILRNKKI
Run BLAST on NCBI

transcript from alignment at sc0002929:722..1354

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041598 ID=TCONS_00041598|Name=TCONS_00041598|organism=Clytia hemisphaerica|type=transcript|length=633bp|location=Sequence derived from alignment at sc0002929:722..1354 (Clytia hemisphaerica)
cttattttcttattccgCAGAATATAAATTGTTGAATTGATTCCTCCATT
GAGAATCACAATATTGTAACAATAATTTAAAAACTTCACTGACAAGGATG
ATTCCAGTAATGTTCGATCAATCAGAGACCAAATAACAAAGAGTGGAAAA
GGCATCATACAAAGTGAATAGAAGAAAGATATTAAAAGAAGAGTTTTCCC
AGCtgactttttattttccagTGATGTATTTCGTGGAGTATTTGTTTCAG
TGTTATTATATGTTTGCATTTCGATCTCAAATCTTTGCGAGTTCTTCTTA
AGATGCAAATAAGaaattatatttataaaaagaatgaaatcCACCAACAA
AAACATTGTCAGAGAAGTCAAAAGTTGGATCTTTTGGAATGTTTCCTGTC
TCATATTTTTGTATTGCCAAGCAAGTACCAAGGCTATTGAAATGCTAAAG
ACAGCGATGCATACAATGGTGACATAAACAAGTTTTGTTGGGATGTGTTG
AAAAGGTCGTTTTATATTAAAGCAGCGAAGCagtgaaatcaatgaaaaag
ttagaCAGCTGCATATAATAGTTGCATTATTGATGCTAAGAAAAGCTACA
ATAATTCCACAATCGATATTCTTCTCAGTCAAT

Coding sequence (CDS) from alignment at sc0002929:722..1354

>TCONS_00041598 ID=TCONS_00041598|Name=TCONS_00041598|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0002929:722..1354 (Clytia hemisphaerica)
tattttcttattccgCAGAATATAAATTGTTGAATTGATTCCTCCATTGA
GAATCACAATATTGTAACAATAATTTAAAAACTTCACTGACAAGGATGAT
TCCAGTAATGTTCGATCAATCAGAGACCAAATAACAAAGAGTGGAAAAGG
CATCATACAAAGTGAATAGAAGAAAGATATTAAAAGAAGAGTTTTCCCAG
CtgactttttattttccagTGATGTATTTCGTGGAGTATTTGTTTCAGTG
TTATTATATGTTTGCATTTCGATCTCAAATCTTTGCGAGTTCTTCTTAAG
ATGCAAATAAGaaattatatttataaaaagaatgaaatcCACCAACAAAA
ACATTGTCAGAGAAGTCAAAAGTTGGATCTTTTGGAATGTTTCCTGTCTC
ATATTTTTGTATTGCCAAGCAAGTACCAAGGCTATTGAAATGCTAAAGAC
AGCGATGCATACAATGGTGACATAAACAAGTTTTGTTGGGATGTGTTGAA
AAGGTCGTTTTATATTAAAGCAGCGAAGCagtgaaatcaatgaaaaagtt
agaCAGCTGCATATAATAGTTGCATTATTGATGCTAAGAAAAGCTACAAT
AATTCCACAATCGATATTCTTCTCAGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025534XLOC_025534Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041598-proteinTCONS_00041598-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041598-exon-sc0002929-1491911889:722..1354TCONS_00041598-exon-sc0002929-1491911889:722..1354Clytia hemisphaericaexon
TCONS_00041598-exon-sc0002929-1510915933:722..1354TCONS_00041598-exon-sc0002929-1510915933:722..1354Clytia hemisphaericaexon
TCONS_00041598-exon-sc0002929-1575043694:722..1354TCONS_00041598-exon-sc0002929-1575043694:722..1354Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002929supercontigsc0002929:722..1354 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.0557264	1.61382	0.173376	0	0	0.0628137	0.32191	4.35841	4.00231	1.29441	0.473526	0.287817	0.261667	0	0.160355	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top