TCONS_00041595 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041595
Unique NameTCONS_00041595
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041595 ID=TCONS_00041595|Name=TCONS_00041595|organism=Clytia hemisphaerica|type=transcript|length=843bp
TTCCCATTTTTCTAGATGTTTTTGAAAAGTAGTTTATTTACCTTTATTTG
ACATTATccatgtaaaatttttttccatctGTTTCTgactgtttttattt
tctctatATTTGAAAGATTTACATTGACAtaaaaatttatgtgttttgaa
ggtaaaaaataaaaacaggatAAAACAGGAAAAAGACTCGCCATAGCTTA
GATTGTgatttagcctggatatccaggctgtaaactatttcacagtctag
tttttgatattttagagCTAAGCATTAGCTCATGTTAATTTCGAGGAAGC
CACTAACCCTACGCCCATCACGGCTCTTACGCCCTTACGCATCAAACATA
CGCCCGCTTGgtggccatcttgaattgtagcCTATAAACCGTGACCGAAA
ATCGAAACacattcttttaaaatcatAATGTTTTGGAATTTGATGAGTGA
AGTCATGTGGATTCTTGGAAATTTTATTCTGTAAATTTAATCAAGCTGTT
GTAACTCGTTGATCCTGTCGTAGTTGGAACCATCTTTGTGTAAATTATTT
GGCATTCTGTCGTGCATGGTATCAATCAAATTTTGGGATACTGTACATTG
CAACTTCCCTTTCTGGTGTGTTTACATTCGACCTGGTTGATTTGAGAAAC
AGCGAAATGTGGTGCCCTTTCGAGACCGTTCCCAATCCATTTGTGGCCGT
AACGTAGCCTTGGCTTGCCTGTCAACCTCCACAAACCAATCAGCGGAGTG
CTTCCTGCCAGTCCTGCCCTGTTGTGACCTAGATTCCATCAACAACTCCA
AGTTTGCTGGGTGAGTCGTTTCCTTTTTAGAGTTTGTTGTCNN
Run BLAST on NCBI

transcript from alignment at sc0002926:9142..9984

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041595 ID=TCONS_00041595|Name=TCONS_00041595|organism=Clytia hemisphaerica|type=transcript|length=843bp|location=Sequence derived from alignment at sc0002926:9142..9984 (Clytia hemisphaerica)
NNGACAACAAACTCTAAAAAGGAAACGACTCACCCAGCAAACTTGGAGTT
GTTGATGGAATCTAGGTCACAACAGGGCAGGACTGGCAGGAAGCACTCCG
CTGATTGGTTTGTGGAGGTTGACAGGCAAGCCAAGGCTACGTTACGGCCA
CAAATGGATTGGGAACGGTCTCGAAAGGGCACCACATTTCGCTGTTTCTC
AAATCAACCAGGTCGAATGTAAACACACCAGAAAGGGAAGTTGCAATGTA
CAGTATCCCAAAATTTGATTGATACCATGCACGACAGAATGCCAAATAAT
TTACACAAAGATGGTTCCAACTACGACAGGATCAACGAGTTACAACAGCT
TGATTAAATTTACAGAATAAAATTTCCAAGAATCCACATGACTTCACTCA
TCAAATTCCAAAACATTatgattttaaaagaatgtGTTTCGATTTTCGGT
CACGGTTTATAGgctacaattcaagatggccacCAAGCGGGCGTATGTTT
GATGCGTAAGGGCGTAAGAGCCGTGATGGGCGTAGGGTTAGTGGCTTCCT
CGAAATTAACATGAGCTAATGCTTAGctctaaaatatcaaaaactagact
gtgaaatagtttacagcctggatatccaggctaaatcACAATCTAAGCTA
TGGCGAGTCTTTTTCCTGTTTTatcctgtttttattttttaccttcaaaa
cacataaatttttaTGTCAATGTAAATCTTTCAAATatagagaaaataaa
aacagtcAGAAACagatggaaaaaaattttacatggATAATGTCAAATAA
AGGTAAATAAACTACTTTTCAAAAACATCTAGAAAAATGGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025531XLOC_025531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041595-exon-sc0002926-1491911889:9142..9984TCONS_00041595-exon-sc0002926-1491911889:9142..9984Clytia hemisphaericaexon
TCONS_00041595-exon-sc0002926-1510915933:9142..9984TCONS_00041595-exon-sc0002926-1510915933:9142..9984Clytia hemisphaericaexon
TCONS_00041595-exon-sc0002926-1575043694:9142..9984TCONS_00041595-exon-sc0002926-1575043694:9142..9984Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002926supercontigsc0002926:9142..9984 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.67379	3.37656	2.87856	2.97444	6.62471	5.73354	7.35491	9.06499	2.40819	6.71603	3.50416	1.88786	3.74911	3.88041	3.12967	5.91325	5.08409	4.68429	4.63459	4.63898	4.91611	5.27262	4.01161	4.70117	2.19619	5.97316	5.755	5.11103	5.21785	4.36132
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041595 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top