TCONS_00041552 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041552
Unique NameTCONS_00041552
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041552 ID=TCONS_00041552|Name=TCONS_00041552|organism=Clytia hemisphaerica|type=transcript|length=1304bp
AAGTAAGGAGAAGTACATGAAAAAGGAATGCACGTTATGCTCGACCTATC
AATTTGAAAGAATCACCTGAGACGACAGATGATATTACTAAAAACTCCAT
GGCTAATTGAAAATGCGCTATACTGTGAAAGATATATTTTATGTATGGTA
ATTTTATGTCACATATTTTGTAAAACAAGATCTGTACTGACATATAGGCA
GGTTTTATATGTTATATATGATATTTCTATGTATTTACCACCACAGGTGA
TTTAAGTCCAATATCAAGTCGTAAATTGAAAACGTGACGTCTTGAAAACT
TCACCAAATTTGGAGCTAAAATGCATGTCGTTGAAATTTAACTTTGAACA
AAAGATTTAAAATTTTAATGACCTAGTTCATAGTTCAAAATTAACAGTTT
TCAAGATATCATGTTTTCAAGATTTATGATATCATCCGGTTATGACGCCA
ATTTTTACTTTTATGTTGATCATTGAATCTTGAGGTAGTATTTAGTTAGG
TCACAAACCGGATCCTGAAACTACATATAATTGATCATTTAAAGGTTACT
AAGTGGTTCCCTGGGTACGGGTTCCATTTATTTACTTTTTGCCATTTAGG
GTTTTTCAAAAGTTTGGACACGCCCTAACTCACCTGAGGCGACAGTTCTT
AACTGATTATTTCATGTCACATATTTCAGCActgttttaaaaaaagatat
acGTAGGTCATATAGAAATTTTTCTTACATTTGGTAGGTTTATGTACATA
CCACGACAGTTCTTAACCCTTTGGCTCTATACCAGGTCAAATCTTACCCT
AACTAATTGAGAAGTTATGAAAACTGACTTAGCTTGAGTTTTATAATGAA
ATTGTGACTGAGAGTCCTCTAGGTTGTATCATCTTGTAAACATGAAAATA
GTAAGTTGTGAGCTAGAACTTCAAATGAAAATAACTCCAGCTAAAGTTCT
AAGGCGAAATTCGCCATTTTCCCCTTAACCCTAACCCCCACAAGGATTTG
TAAAGAAATACAAAAAACCAGATGATATACGCATTAGTAATTTGAAGTTA
TTATGAGGTTAAAGAAGCCGTTCGATTCTTAATAATACTTTTTATGAATG
CCCTTTGTtgcttttctttattgaaatgCGTATGCGTGATATGTTCATAT
TCCTATCTTTATGTTTCTTAActgatgttgatattttttaataaaacatg
atttttttaatcaaacatgttttatttgcaaaacaagagaaaaaacgtac
tttttaatattttattttgctGAGATAATATTTCATTgtattttatcaga
tttt
Run BLAST on NCBI

transcript from alignment at sc0002907:8610..12560+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041552 ID=TCONS_00041552|Name=TCONS_00041552|organism=Clytia hemisphaerica|type=transcript|length=3951bp|location=Sequence derived from alignment at sc0002907:8610..12560+ (Clytia hemisphaerica)
AAGTAAGGAGAAGTACATGAAAAAGGAATGTAAGTGTCGAAATATTGTTC
CAAAAGAAAAATGTGTTTTTTGTTTTGATTTTTTAAAATTAATGTATTCT
GACGACACACTGAGGATAGAAACTCTCTCTATTTTTTCAAACAAGTGTTT
TTGCAGTAGTATTAGTGGTAGTAGTAGCAGTAGCAGTAGCAGCAGTAGCA
GTAGCAGCAGTAGCAGTAGCAGCAGCAGTAGCAGTAGTAGTAGTAGTAGC
AGTAGCAGTAGCAGTAGCAGTAGCAGTAGCAGTAGCAGTAGCAGTAGCAG
TAGTAGTAGTAGTAGCAGTAGCATTAGCAGTAGCAGTAGCagtagtagta
gtagtagagAAATTATGCCCTTTTGCTTTGCTTCTTATGTTCCTGGGGAA
GGTACTAGGCAAAAAGAGGGTACAGGTATATGCTGCCCTTGAGTGTCCCT
TTTTTTACCTTAAAAATCCCACTGAGAATCGCAAAAATCACGAACTTTAA
ATCCAGTCCCTCTAAGGGTTGTTAAAACAGCTAAATACAATTTCTCGACC
CTCAAGTTAAATATTCCAATAAAGGGTTACATAATTCGTAAAAAGTTGGG
TTTTTCCTGGCTTTCAGTCCCATTAAGCTCTGTTTTAGCTCCTCTATGGG
CCTAATCACCAAAGGTCGGACGGCACCTTCCCATTATCTTGCAAAACTAG
TACTTCTTGTGCTTATGGCttcatctatcaagagttatcaaGACTTAAAA
TGATTCGGTACTGTTCAGCTTTCAGTTACAAAAAGAAATGGAAAAGGAAT
ATAgagtttaaattttttcaacttcCAAATGAAACGGGATTGCGAAAAAT
GGCTTTATAACATATCTGAAGGGAAGGTTCTTAAAGATGAGAAAAACTTT
TACATTTGCTCGAATCATTTTGAGGAAAGCTGCTTTAAACGAGATTTACA
GTTAAATGTTCATGTTGTTGcttgtcttctttttcttctctaGACGGATT
TGATAATTAGACAGGACTGTGTCTTTCTCATAAATATTAATTTACGctga
tttctgatttctctaTCAATGCCAAAAAATTCCTCCGAGTCTTCTTCTAG
GCTGAGTTATTGGGTGAGAATTAATAACACAGCGAAATCATCGCACAGAT
CTTGCAGCTCATTGAAATTGTCTTCAGTGTCACTGATCGTTGTACTAGAG
GAATCACTAGAACTATTTTCATATTCCTCTGacatatttttacaatttat
aaCACTTAAAATCTCACAATTGAAAACTTGAGAGATTGATTTCCTCAGAA
CTTCAACTTTTGAACATTTTTCAAAAACCCTTTAATCTTTCTCTCTATAC
ATGTCGCCAAATAAAAGATCTTTGATATCCTTTTAAGTCTTGTTTACAGG
TTCGTTTATTCAACAATTTAATAAATAATGTAATTTAATGTTATTCAATT
CTTCTTTTTTTATTTAATATACTCTGGACATCTTTTCTGCCTGTTTAGTG
GACTTTTTACCAATCACATAGCCACATATATAACAATTTCAGACAGTTTT
AGCTTAAATATACTTAGATATACTTTAGTTTAGATATACTTTGTAGAAAA
ATTAGATTTTCAAATCTACGTCACTCGTACCGAGACTCCCATTTTCCGCA
GCCTTGCGAAAAAAGCTTAGATTTGAGAAATCTTTCATGCTCGATATCAA
TAAAAATAGAATCATTTAAAACCTTTTATCTTAAAGCTCAGGACATCTTG
ACAAACTTGTATACTTTTCTTGGCGCACCCGATACACCTAGCATACCTTC
AATCATTGAACCTCGGAGCTATTTGAATGAAAAGAAACGAATAAGCACGG
CGATCTTGTACGCGTACCTTTAGCGGTTGCATTTTGAAATACCAAATGGC
CAAAAATAATCTTACATACATTTGACCAGTGCATTTAATCCCTAAATATG
TTTACGACCATTGTACTATATAAATTTCATCATTCCTCCCATAAGAACGA
AATGGCATCAAAATTTAAATTCTCCAAATAGTGATTTTAGGTAGGGATAT
ATCCTCCCCAGTTCTTCCTCATTCGGGATATTTATCTTTGGGAATCAACT
AAGAATAGAAATTATCACTGGGAAATAATTTTTCTTGCAGGAGTTCCAAG
AGCATTGTTGTGAATAAATGTCATCGATTGAGACATTGTTTTGAACCAAA
TAAAAGATACTTTTGCAATTTTCTAACATCCATACTTTGAAATTTGAGAA
ACTACGCAAATGTCTTGCTTGCGTGTGGTAAAACCAAAGATCGCCGTGAA
GATTGAAAAAGAAGTTTTTTTCTTTTAAAATACATCAAACATAATATAGT
GCGATACTGAACTTTTCTAAAAGATGTCACGAATGTTTGAAATGGTCGTG
TCACTATTCTTCGCTTATATCGTAATGGTTTTTTCGAAAGCAAGGCTTAA
TCCTATTCTTTCACTAACTGGTTACCTTAAAAGAATAACTTTATGCAAGA
ACTAATAAATGCGGAACTAATTAAGGATGTACTTAATTAATCCAATTACA
ATCCAGGCAAACGATAGAACTTGTGCTAGGAAGCGATGCATTCCATTCCA
TTATATTTTCCGGTTCCAAACTTATTTTTTCATATTTATCAATTTTTTTT
CACAGTTTATTCTTTTCTTTTCTTAGGCACGTTATGCTCGACCTATCAAT
TTGAAAGAATCACCTGAGACGACAGATGATATTACTAAAAACTCCATGGC
TAATTGAAAATGCGCTATACTGTGAAAGATATATTTTATGTATGGTAATT
TTATGTCACATATTTTGTAAAACAAGATCTGTACTGACATATAGGCAGGT
TTTATATGTTATATATGATATTTCTATGTATTTACCACCACAGGTGATTT
AAGTCCAATATCAAGTCGTAAATTGAAAACGTGACGTCTTGAAAACTTCA
CCAAATTTGGAGCTAAAATGCATGTCGTTGAAATTTAACTTTGAACAAAA
GATTTAAAATTTTAATGACCTAGTTCATAGTTCAAAATTAACAGTTTTCA
AGATATCATGTTTTCAAGATTTATGATATCATCCGGTTATGACGCCAATT
TTTACTTTTATGTTGATCATTGAATCTTGAGGTAGTATTTAGTTAGGTCA
CAAACCGGATCCTGAAACTACATATAATTGATCATTTAAAGGTTACTAAG
TGGTTCCCTGGGTACGGGTTCCATTTATTTACTTTTTGCCATTTAGGGTT
TTTCAAAAGTTTGGACACGCCCTAACTCACCTGAGGCGACAGTTCTTAAC
TGATTATTTCATGTCACATATTTCAGCActgttttaaaaaaagatatacG
TAGGTCATATAGAAATTTTTCTTACATTTGGTAGGTTTATGTACATACCA
CGACAGTTCTTAACCCTTTGGCTCTATACCAGGTCAAATCTTACCCTAAC
TAATTGAGAAGTTATGAAAACTGACTTAGCTTGAGTTTTATAATGAAATT
GTGACTGAGAGTCCTCTAGGTTGTATCATCTTGTAAACATGAAAATAGTA
AGTTGTGAGCTAGAACTTCAAATGAAAATAACTCCAGCTAAAGTTCTAAG
GCGAAATTCGCCATTTTCCCCTTAACCCTAACCCCCACAAGGATTTGTAA
AGAAATACAAAAAACCAGATGATATACGCATTAGTAATTTGAAGTTATTA
TGAGGTTAAAGAAGCCGTTCGATTCTTAATAATACTTTTTATGAATGCCC
TTTGTtgcttttctttattgaaatgCGTATGCGTGATATGTTCATATTCC
TATCTTTATGTTTCTTAActgatgttgatattttttaataaaacatgatt
tttttaatcaaacatgttttatttgcaaaacaagagaaaaaacgtacttt
ttaatattttattttgctGAGATAATATTTCATTgtattttatcagattt
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025494XLOC_025494Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041552-exon-sc0002907-1491911889:8610..8638TCONS_00041552-exon-sc0002907-1491911889:8610..8638Clytia hemisphaericaexon
TCONS_00041552-exon-sc0002907-1510915933:8610..8638TCONS_00041552-exon-sc0002907-1510915933:8610..8638Clytia hemisphaericaexon
TCONS_00041552-exon-sc0002907-1575043694:8610..8638TCONS_00041552-exon-sc0002907-1575043694:8610..8638Clytia hemisphaericaexon
TCONS_00041552-exon-sc0002907-1491911889:11286..12560TCONS_00041552-exon-sc0002907-1491911889:11286..12560Clytia hemisphaericaexon
TCONS_00041552-exon-sc0002907-1510915933:11286..12560TCONS_00041552-exon-sc0002907-1510915933:11286..12560Clytia hemisphaericaexon
TCONS_00041552-exon-sc0002907-1575043694:11286..12560TCONS_00041552-exon-sc0002907-1575043694:11286..12560Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002907supercontigsc0002907:8610..12560 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.034654	0	0	0	0	0.0390895	0.204233	0.0765027	0.262355	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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