TCONS_00041533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041533
Unique NameTCONS_00041533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041533 ID=TCONS_00041533|Name=TCONS_00041533|organism=Clytia hemisphaerica|type=transcript|length=296bp
GCTTCTTTGTTTTGCATTGCGTCACATTCCCTTGCGTCTAGATAATTGCC
CCTCATGGGAAATTAGATTGGGTTTATATTTTGTAACTATTTTGTTTGTA
CACTAGTTCGACACAGAGAGAGTAAGAGAGCGTTTTGTGTGTTGTGCTAG
TAgaagcaaaattatttttactgtcGTTTTTACAAGAACTTGAGAACTTG
ACTTTACATTTTtcgttgtctattttctgtttggatttctagtttTCTAC
TtaagttcttaatatttcgaccAGTCATTAATAAAACCTTTTCACA
Run BLAST on NCBI

transcript from alignment at sc0002901:2813..3108

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041533 ID=TCONS_00041533|Name=TCONS_00041533|organism=Clytia hemisphaerica|type=transcript|length=296bp|location=Sequence derived from alignment at sc0002901:2813..3108 (Clytia hemisphaerica)
TGTGAAAAGGTTTTATTAATGACTggtcgaaatattaagaacttaAGTAG
AaaactagaaatccaaacagaaaatagacaacgaAAAATGTAAAGTCAAG
TTCTCAAGTTCTTGTAAAAACgacagtaaaaataattttgcttcTACTAG
CACAACACACAAAACGCTCTCTTACTCTCTCTGTGTCGAACTAGTGTACA
AACAAAATAGTTACAAAATATAAACCCAATCTAATTTCCCATGAGGGGCA
ATTATCTAGACGCAAGGGAATGTGACGCAATGCAAAACAAAGAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025480XLOC_025480Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041533-exon-sc0002901-1491911889:2813..3108TCONS_00041533-exon-sc0002901-1491911889:2813..3108Clytia hemisphaericaexon
TCONS_00041533-exon-sc0002901-1510915933:2813..3108TCONS_00041533-exon-sc0002901-1510915933:2813..3108Clytia hemisphaericaexon
TCONS_00041533-exon-sc0002901-1575043694:2813..3108TCONS_00041533-exon-sc0002901-1575043694:2813..3108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002901supercontigsc0002901:2813..3108 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.66221	5.95205	3.68582	3.60599	0	0	0	0.979533	0.342897	0	0	0.542003	2.05213	0	0.924233	1.3397	0.610935	0.347729	1.29767	2.71584	1.18028	1.72709	0.466558	5.09002	0.436884	0.389908	2.78979	2.38187	10.8394	11.0436
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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