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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041526 ID=TCONS_00041526|Name=TCONS_00041526|organism=Clytia hemisphaerica|type=transcript|length=1146bp
AAGGATTTCTTTATCGTTTCAATTGTTATTTCTGGATGTATATAAAATAA
TGGATTTATCACTGTATATTTCACTATGCATAATTTTTCACTCGTTCTAT
TTCATCTTTCATGGTTGTTCAATCGACAGCGGATGTGCTTCTCCGGGTTT
TTACAAATGCTTCAGAATGGTCTTTATCTCTCatttgatgGTAAGTGGCT
TTGTATTTGTGGTGATCTTTCTCTTCGTCCCATCTTTACCACAAGCGTAC
TACCTTGTCTCGTTTTCGTGGTTTGCACTGTTACTTataaattggagttg
cttaaaTTGTTGGAATCGTTGGGAAGGAATAAGAATACAAAAAGAATGGG
GCACAGATGATAACGGTAATCCAAAATGTACCAAGCGGTATAGACACTCG
ATGAAAGAAATCAAGGAAATTCTGGATGAAAATTTACCAAAGGACCCAAA
AGTGATTGTTCAATGCGAGGCTGCAGAACCTCAAACTTCGTGCTGCAGAA
AACAAAGAGTTATTCGGAGCAATCAGAAAGAGTTTGAATTTCAACATTGG
ATCGATGTGACTGAACAACATTTGGTGAAATCACAAATTGAAGAAGCAAT
TTTTGgtgaattgaaaattgatttcgaATTTGATGACAAAGAAACGAAAG
AGTCATATGAACAACACGTTCAGAATCTTGTAAAAGAAGCAAAGCAACAT
TCTCCAAACGCTCAAGTCAACATCAAGCAAATTTTCCAAGTCGGTGAAAA
AGATATCAAAACCTACAGACGGTCGTTTTATGGAAAGAAGGCTCTTTTTG
GAGAACCATTCGTTTGCGTTCAATGCATTTTCCCTCAAATTGAACTTTcg
tttaaaatattgaaatggtttttcgaaaaaactGGCTTCAAAAGTTTATT
GACCAAAGAAATTGTTATCAAAAAAGTAATATCTGATAGAAATATTGTAG
CTGTATAGCATTTGTGATCAATAATTTTGTACCATTTTGAATGATATAAC
AGAGTGGAGACTATCTGCACTAATGGAATGTCCCAGGGGACGTTACTGTC
tttggtcgtgttcagaccaaggtttaaagcaattaggtctacatgtttct
tttatattccttttgtatctaacggcacgctcctcattagttaaac Run BLAST on NCBI protein sequence of TCONS_00041526-protein >TCONS_00041526-protein ID=TCONS_00041526-protein|Name=TCONS_00041526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
RISLSFQLLFLDVYKIMDLSLYISLCIIFHSFYFIFHGCSIDSGCASPGF
YKCFRMVFISHLMVSGFVFVVIFLFVPSLPQAYYLVSFSWFALLLINWSC
LNCWNRWEGIRIQKEWGTDDNGNPKCTKRYRHSMKEIKEILDENLPKDPK
VIVQCEAAEPQTSCCRKQRVIRSNQKEFEFQHWIDVTEQHLVKSQIEEAI
FGELKIDFEFDDKETKESYEQHVQNLVKEAKQHSPNAQVNIKQIFQVGEK
DIKTYRRSFYGKKALFGEPFVCVQCIFPQIELSFKILKWFFEKTGFKSLL
TKEIVIKKVISDRNIVAV Run BLAST on NCBI transcript from alignment at sc0002900:5266..6832+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041526 ID=TCONS_00041526|Name=TCONS_00041526|organism=Clytia hemisphaerica|type=transcript|length=1567bp|location=Sequence derived from alignment at sc0002900:5266..6832+ (Clytia hemisphaerica)
AAGGATTTCTTTATCGTTTCAATTGTTATTTCTGGATGTATATAAAATAA
TGGATTTATCACTGTATATTTCACTATGCATAATTTTTCACTCGTTCTAT
TTCATCTTTCATGGTTGTTCAATCGACAGCGGATGTGCTTCTCCGGGTTT
TTACAAATGCTTCAGAATGGTCTTTATCTCTCGTAAGTTTTAAGAaccat
ttaaaaaagaaaaaaataaatatcaagCTTGCACTGGgaaatttaaagtt
taaatCGAATTGCTCTAAATGTGCACTCCTTTTTGTTACCATGTGGAAAC
CATGCCAGCGTAATGAGATTTATTTTAGAGTGGTTTGTTTCCCCCTGGTA
GCCAGAAGATAAGTTAAGTTAAATTAAAGCATACCTTTTTTATaaaaccc
ttcaaaatttttaaagccgtcagatgtttttaacattttgagctttaacc
ctaaaaatattcttaacatgttataATGTTCCagggatgttcttatatag
gttgtgcttataaaaaatgtgcatCGCCTTTAGAACAAAGCTTTGGGTTG
TAAAGTATTGGAAGTTTTAATCTAATGCCATGatgtaaatttaaaatttt
cagatttgatgGTAAGTGGCTTTGTATTTGTGGTGATCTTTCTCTTCGTC
CCATCTTTACCACAAGCGTACTACCTTGTCTCGTTTTCGTGGTTTGCACT
GTTACTTataaattggagttgcttaaaTTGTTGGAATCGTTGGGAAGGAA
TAAGAATACAAAAAGAATGGGGCACAGATGATAACGGTAATCCAAAATGT
ACCAAGCGGTATAGACACTCGATGAAAGAAATCAAGGAAATTCTGGATGA
AAATTTACCAAAGGACCCAAAAGTGATTGTTCAATGCGAGGCTGCAGAAC
CTCAAACTTCGTGCTGCAGAAAACAAAGAGTTATTCGGAGCAATCAGAAA
GAGTTTGAATTTCAACATTGGATCGATGTGACTGAACAACATTTGGTGAA
ATCACAAATTGAAGAAGCAATTTTTGgtgaattgaaaattgatttcgaAT
TTGATGACAAAGAAACGAAAGAGTCATATGAACAACACGTTCAGAATCTT
GTAAAAGAAGCAAAGCAACATTCTCCAAACGCTCAAGTCAACATCAAGCA
AATTTTCCAAGTCGGTGAAAAAGATATCAAAACCTACAGACGGTCGTTTT
ATGGAAAGAAGGCTCTTTTTGGAGAACCATTCGTTTGCGTTCAATGCATT
TTCCCTCAAATTGAACTTTcgtttaaaatattgaaatggtttttcgaaaa
aactGGCTTCAAAAGTTTATTGACCAAAGAAATTGTTATCAAAAAAGTAA
TATCTGATAGAAATATTGTAGCTGTATAGCATTTGTGATCAATAATTTTG
TACCATTTTGAATGATATAACAGAGTGGAGACTATCTGCACTAATGGAAT
GTCCCAGGGGACGTTACTGTCtttggtcgtgttcagaccaaggtttaaag
caattaggtctacatgtttcttttatattccttttgtatctaacggcacg
ctcctcattagttaaac Coding sequence (CDS) from alignment at sc0002900:5266..6832+ >TCONS_00041526 ID=TCONS_00041526|Name=TCONS_00041526|organism=Clytia hemisphaerica|type=CDS|length=1914bp|location=Sequence derived from alignment at sc0002900:5266..6832+ (Clytia hemisphaerica)
AGGATTTCTTTATCGTTTCAATTGTTATTTCTGGATGTATATAAAATAAT
GGATTTATCACTGTATATTTCACTATGCATAATTTTTCACTCGTTCTATT
TCATCTTTCATGGTTGTTCAATCGACAGCGGATGTGCTTCTCCGGGTTTT
TACAAATGCTTCAGAATGGTCTTTATCTCTCatttgatgGTAAGTGGCTT
TGTATTTGTGGTGATCTTTCTCTTCGTCCCATCTTTACCACAAGCGTACT
ACCTTGTCTCGTTTTCGTGGTTTGCACTGTTACTTataaattggagttgc
ttaaaTTGTTGGAATCGTTGGGAAGGAATAAGAATACAAAAAGAATGGGG
CACAGATGATAACGGTAATCCAAAATGTACCAAGCGGTATAGACACTCGA
TGAAAGAAATCAAGGAAATTCTGGATGAAAATTTACCAAAGGACCCAAAA
GTGATTGTTCAATGCGAGGCTGCAGAACCTCAAACTTCGTGCTGCAGAAA
ACAAAGAGTTATTCGGAGCAATCAGAAAGAGTTTGAATTTCAACATTGGA
TCGATGTGACTGAACAACATTTGGTGAAATCACAAATTGAAGAAGCAATT
TTTGgtgaattgaaaattgatttcgaATTTGATGACAAAGAAACGAAAGA
GTCATATGAACAACACGTTCAGAATCTTGTAAAAGAAGCAAAGCAACATT
CTCCAAACGCTCAAGTCAACATCAAGCAAATTTTCCAAGTCGGTGAAAAA
GATATCAAAACCTACAGACGGTCGTTTTATGGAAAGAAGGCTCTTTTTGG
AGAACCATTCGTTTGCGTTCAATGCATTTTCCCTCAAATTGAACTTTcgt
ttaaaatattgaaatggtttttcgaaaaaactGGCTTCAAAAGTTTATTG
ACCAAAGAAATTGTTATCAAAAAAGTAATATCTGATAGAAATATTGTAGC
TGTATAGAGGATTTCTTTATCGTTTCAATTGTTATTTCTGGATGTATATA
AAATAATGGATTTATCACTGTATATTTCACTATGCATAATTTTTCACTCG
TTCTATTTCATCTTTCATGGTTGTTCAATCGACAGCGGATGTGCTTCTCC
GGGTTTTTACAAATGCTTCAGAATGGTCTTTATCTCTCatttgatgGTAA
GTGGCTTTGTATTTGTGGTGATCTTTCTCTTCGTCCCATCTTTACCACAA
GCGTACTACCTTGTCTCGTTTTCGTGGTTTGCACTGTTACTTataaattg
gagttgcttaaaTTGTTGGAATCGTTGGGAAGGAATAAGAATACAAAAAG
AATGGGGCACAGATGATAACGGTAATCCAAAATGTACCAAGCGGTATAGA
CACTCGATGAAAGAAATCAAGGAAATTCTGGATGAAAATTTACCAAAGGA
CCCAAAAGTGATTGTTCAATGCGAGGCTGCAGAACCTCAAACTTCGTGCT
GCAGAAAACAAAGAGTTATTCGGAGCAATCAGAAAGAGTTTGAATTTCAA
CATTGGATCGATGTGACTGAACAACATTTGGTGAAATCACAAATTGAAGA
AGCAATTTTTGgtgaattgaaaattgatttcgaATTTGATGACAAAGAAA
CGAAAGAGTCATATGAACAACACGTTCAGAATCTTGTAAAAGAAGCAAAG
CAACATTCTCCAAACGCTCAAGTCAACATCAAGCAAATTTTCCAAGTCGG
TGAAAAAGATATCAAAACCTACAGACGGTCGTTTTATGGAAAGAAGGCTC
TTTTTGGAGAACCATTCGTTTGCGTTCAATGCATTTTCCCTCAAATTGAA
CTTTcgtttaaaatattgaaatggtttttcgaaaaaactGGCTTCAAAAG
TTTATTGACCAAAGAAATTGTTATCAAAAAAGTAATATCTGATAGAAATA
TTGTAGCTGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041526-exon-sc0002900-1491911889:5266..5447 | TCONS_00041526-exon-sc0002900-1491911889:5266..5447 | Clytia hemisphaerica | exon |
| TCONS_00041526-exon-sc0002900-1510915933:5266..5447 | TCONS_00041526-exon-sc0002900-1510915933:5266..5447 | Clytia hemisphaerica | exon |
| TCONS_00041526-exon-sc0002900-1575043694:5266..5447 | TCONS_00041526-exon-sc0002900-1575043694:5266..5447 | Clytia hemisphaerica | exon |
| TCONS_00041526-exon-sc0002900-1491911889:5869..6832 | TCONS_00041526-exon-sc0002900-1491911889:5869..6832 | Clytia hemisphaerica | exon |
| TCONS_00041526-exon-sc0002900-1510915933:5869..6832 | TCONS_00041526-exon-sc0002900-1510915933:5869..6832 | Clytia hemisphaerica | exon |
| TCONS_00041526-exon-sc0002900-1575043694:5869..6832 | TCONS_00041526-exon-sc0002900-1575043694:5869..6832 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002900 | supercontig | sc0002900:5266..6832 + |
Blast
The following BLAST results are available for this feature:
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