TCONS_00041487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041487
Unique NameTCONS_00041487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041487 ID=TCONS_00041487|Name=TCONS_00041487|organism=Clytia hemisphaerica|type=transcript|length=428bp
ctctatcattgcttttatggctggactacataattattcaaaaggacgtc
ctctttgaaaaaaggtctatcattttattgtttatagtATGTGAATCCAG
CCTATGAAAAAGCGACGGAACCATCTCCGCTCCGCACCTCGCTgatctac
tctaccattttattttgttttgatttaagtttgtattttaatgaatgACC
AGACCGGCGGTAGTTGTTTCCAGAGAATGCAGCAACCTTTTGACTCACAA
GACTCAGTTCCCCATGTTAAATTACCCCATCCATTGAtctttttgccttt
ccatccgcagtcaatcttgaattgtatgcaaaaatacaggaattCCAATT
CCCATATTTTATTACAATCTTGTCCTGTTGTGTCCTGTTTGTGTTGTGGT
ACGATTCCAAAAATGTTTGAccacattt
Run BLAST on NCBI

transcript from alignment at sc0002892:4854..5281

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041487 ID=TCONS_00041487|Name=TCONS_00041487|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at sc0002892:4854..5281 (Clytia hemisphaerica)
aaatgtggTCAAACATTTTTGGAATCGTACCACAACACAAACAGGACACA
ACAGGACAAGATTGTAATAAAATATGGGAATTGGaattcctgtatttttg
catacaattcaagattgactgcggatggaaaggcaaaaagaTCAATGGAT
GGGGTAATTTAACATGGGGAACTGAGTCTTGTGAGTCAAAAGGTTGCTGC
ATTCTCTGGAAACAACTACCGCCGGTCTGGTcattcattaaaatacaaac
ttaaatcaaaacaaaataaaatggtagagtagatcAGCGAGGTGCGGAGC
GGAGATGGTTCCGTCGCTTTTTCATAGGCTGGATTCACATactataaaca
ataaaatgatagaccttttttcaaagaggacgtccttttgaataattatg
tagtccagccataaaagcaatgatagag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025449XLOC_025449Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041487-exon-sc0002892-1491911889:4854..5281TCONS_00041487-exon-sc0002892-1491911889:4854..5281Clytia hemisphaericaexon
TCONS_00041487-exon-sc0002892-1510915933:4854..5281TCONS_00041487-exon-sc0002892-1510915933:4854..5281Clytia hemisphaericaexon
TCONS_00041487-exon-sc0002892-1575043694:4854..5281TCONS_00041487-exon-sc0002892-1575043694:4854..5281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002892supercontigsc0002892:4854..5281 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.647995	0.315949	0.917117	1.07671	0.873858	0.690534	0.41655	0.974923	0.682566	1.01456	0.328253	1.18679	1.6161	1.45456	0.183977	0.296153	0	0.74789	1.03325	0	0	0.458391	0.185745	0.168869	2.7829	2.32844	0.222133	0	0.359612	0.366388
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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