TCONS_00041427 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00041427
Unique Name	TCONS_00041427
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	647

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002864:8053..13805+

transcript sequence

>TCONS_00041427 ID=TCONS_00041427|Name=TCONS_00041427|organism=Clytia hemisphaerica|type=transcript|length=647bp
TATTTCTGAGCGGCtccgttcaaaacttttccTCTAGCCTGCTATTCAGG
TTCAGCCAATCATCTTTCAGAAGAATTTTAAATCAACCAATCACAGCACA
GTAAATAAAAAGTTGTCCAACCGCCGCGAATTTTCAAGATGAGTACATTT
ATTTCGAACTTGATGATTGACTCGTATGGTTGGGACTTTGATCGATGAAG
AACATTGCTTGATTTTCATATTAGTTTTCATAACTTAAAATTATAATTTT
ACAATGAGCTCCAACATTCTGAGGGAAAACAATGCTCTTACGAATAAGGT
ACCCTGTTCTGCaccattgaaaaaagaaatcaaagatatTCCTTTGTCAT
CCAAAGTTTCTACagataaagaaaatgataaaaaGAGTTGGAGTTTAAAA
GACTTTGATGTTGGCAAACCACTTGGAAAAGGTTAGTTTTCGCTGCTTTT
TTTCCTCAAACAGACATGACATCCTACAAGTGGTTGCTGTATTCTGTAca
taaaatgaaataataaacTGATTCaggattattattttttatgccATAAT
TATACTCTAGTTTTAGGGGGCCAACCCTTAGGTCATCTGTGTCATCTTTT
GTGGGATGTAACCccatttgattgtttgaaagtAGATAGGATCATgg

Run BLAST on NCBI

transcript from alignment at sc0002864:8053..13805+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00041427 ID=TCONS_00041427|Name=TCONS_00041427|organism=Clytia hemisphaerica|type=transcript|length=5753bp|location=Sequence derived from alignment at sc0002864:8053..13805+ (Clytia hemisphaerica)
TATTTCTGAGCGGCtccgttcaaaacttttccTCTAGCCTGCTATTCAGG
TTCAGCCAATCATCTTTCAGAAGAATTTTAAATCAACCAATCACAGCACA
GTAAATAAAAAGTTGTCCAACCGCCGCGAATTTTCAAGATGAGTACATTT
ATTTCGAACTTGATGATTGACTCGTATGGTTGGGACTTTGATCGATGAAG
AACATTGCTTGATTTTCATATTAGTTTTCATAACTTAAAATTATAATTTT
ACAATGAGCTCCAACATTCTGAGGGAAAACAATGCTCTTACGAATAAGGT
ATATCTATCAATCTTTTTGTTTAATGACATTTCGACGATGATTCATTCAT
CCTCGTCCCTCTTAAATCTCAGAAgacttaaaaaaaaatgcaaatgcACT
GGTCGCTTAGGTGACCTCTagggggttatcctgctgtgttgcaacAACAA
GGGCTGtagtatagtggtcattgactttggttgctgcacaggcgactgag
gttcgattcccactcgcagcggttcacttggcaagtgaatgaaccttcgt
cCGGGTCAGCCCATGCCATGTGAGAGGAATTGGGttgtcagttcaaggtg
ctggcTGACAAGGCgctaattgaaagcgtctatcGTTGCGCCCTTTGGAT
AGTAAAGGGGAAACTATAGACTGATTTAAGCCCATAGAACAAAAAATTAC
CACTTTAAAAtggttgaaaactaaaaatatggcaaatttgatgttttgtg
acgtcatttgggccGTAAATAAGGggacccgtccatattcatttgacaac
acaaaacatcaaattgacgttatcctctgaaACCCCCACCCCCACAGATA
ATGTCAAGCAATGTACTGATGTATACCAAAAGTTgtagccatttttcatc
aaagttttcccgttCCGTCACAAAGTCCATACTTGGTTGTACCGGTGcgt
gtatgtgttcttttaactaatgacctttatttaaaaagaaattaaaagct
ccacttGGCGCTAGGTCTGTGCCGTGCTTTAGGCGTACCACCTTCTNNNN
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CAGAATTAATTTTGgtgatttgataaaatttctagATTTGGCgcgaatta
attttggcgagcaacccattttttatcaatattttagcttaaaaaaaagg
ggaaaagggtttttaggagaaatagagactaaattgaaagaaaattaaat
ttggcaagaGTTTATTTTGGCAAATGACCTATAAATTTCTTTCCGCGAGG
TAAATCCAAACTTTTTGCTATTAGAAGTGGGGAAAgactaacttgaattt
tgagctgtaTAGGGGTAAAAGGACACAACAGAAAGGGTGTCACCTCAAGG
CTTAGTCAGATAAATAAAagctactttaggcgtacaaacttttgcgagga
caaaaaatcgcaaaattcacAACATTTACTAAAGTACTTCTTTACGCTAA
CGATAACTTCCTAGAAAAATAAAAGAGTAAATTTATTACCAAACCCCTTA
AAAGCCTACCATAACACTAAGGGTTGTTGACTGttgtagattttttattt
tcacatatCATGTGTGACCATACAATTAATTCTTCAATAAGGGACATGAA
ATTCTTGCAAGCAACAAGCTTATCTTTTGTATTTGCCAGGCAATTAGCAG
ACAAATTGCTGGCTGACATAACTTAAAAAGTGCCGGCAAAAAACAGAACT
TTTTTACTTTGATGGCAGCTAATTACCAGATTTTTTCTTTGCAGATTGCC
CGCAAAATTCTCCCCTTCGGCCAaatcattttctaaaaaacacAAATGCT
GCTTGACAACTGTCGTCTGGCTTAATGCTGTAAATGATAGATTGCCAGAC
TCTTAAACCTTCTAACCTTAAACACCATTTGATATATGTTTAATGTGATT
CTTTTCAAGGTACCCTGTTCTGCaccattgaaaaaagaaatcaaagatat
TCCTTTGTCATCCAAAGTTTCTACagataaagaaaatgataaaaagtaag
TGTGATGAACCgtggaaaatttgaaatatctgGCCATTTTTCTCATTATT
GTTACTTTTAAATTAGTGCTAAAGTAAAATCTCTTGCATAGAAAATAGGC
AACTCATTTTCTATCCAAAACATGTGACCTGCATGATTTCACACAAACAC
AGAGCCTGAACCGTCAAAAAAAATCTCCCAAAAATCTATTTCCAGATTTT
CTTTAAATGTGTCACATGAAAACAACTGAAGTAATAAGTTCGATCTGCCG
TTCCAAATACAGCACACATCTTATTTTTTAAGGCCTCACTTTATTTGCTT
ATGGAAAATGTTCAAATGTTCAGCTGTTTCATAAAGTTTgccaaataaga
atttttttcaaatcatcaaaacatttcATGTCATCCCCAGCACACATTAG
ACCTGTATCAGCATGTATCATGATGCTTTTTGTACCTTAGGAGTTGGAGT
TTAAAAGACTTTGATGTTGGCAAACCACTTGGAAAAGGTTAGTTTTCGCT
GCTTTTTTTCCTCAAACAGACATGACATCCTACAAGTGGTTGCTGTATTC
TGTAcataaaatgaaataataaacTGATTCaggattattattttttatgc
cATAATTATACTCTAGTTTTAGGGGGCCAACCCTTAGGTCATCTGTGTCA
TCTTTTGTGGGATGTAACCccatttgattgtttgaaagtAGATAGGATCA
Tgg

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_025400	XLOC_025400	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00041427-exon-sc0002864-1491911889:8053..8350	TCONS_00041427-exon-sc0002864-1491911889:8053..8350	Clytia hemisphaerica	exon
TCONS_00041427-exon-sc0002864-1510915933:8053..8350	TCONS_00041427-exon-sc0002864-1510915933:8053..8350	Clytia hemisphaerica	exon
TCONS_00041427-exon-sc0002864-1575043694:8053..8350	TCONS_00041427-exon-sc0002864-1575043694:8053..8350	Clytia hemisphaerica	exon
TCONS_00041427-exon-sc0002864-1491911889:13012..13097	TCONS_00041427-exon-sc0002864-1491911889:13012..13097	Clytia hemisphaerica	exon
TCONS_00041427-exon-sc0002864-1510915933:13012..13097	TCONS_00041427-exon-sc0002864-1510915933:13012..13097	Clytia hemisphaerica	exon
TCONS_00041427-exon-sc0002864-1575043694:13012..13097	TCONS_00041427-exon-sc0002864-1575043694:13012..13097	Clytia hemisphaerica	exon
TCONS_00041427-exon-sc0002864-1491911889:13543..13805	TCONS_00041427-exon-sc0002864-1491911889:13543..13805	Clytia hemisphaerica	exon
TCONS_00041427-exon-sc0002864-1510915933:13543..13805	TCONS_00041427-exon-sc0002864-1510915933:13543..13805	Clytia hemisphaerica	exon
TCONS_00041427-exon-sc0002864-1575043694:13543..13805	TCONS_00041427-exon-sc0002864-1575043694:13543..13805	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002864	supercontig	sc0002864:8053..13805 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.6641	23.5365	137.551	145.816	62.8861	47.5875	14.1778	22.0831	15.6137	18.2353	14.7051	9.47723	4.48429	3.63904	8.79569	11.0618	19.5081	14.7988	0.764846	2.05147	10.1601	9.33559	12.0705	12.6746	21.1162	24.2165	4.40044	3.82405	8.32363	9.50648

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00041427 vs. Swiss-Prot (Human)

BLAST of TCONS_00041427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00041427 (transcript) - C. hemisphaerica