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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041413 ID=TCONS_00041413|Name=TCONS_00041413|organism=Clytia hemisphaerica|type=transcript|length=1313bp
GTTTTGTGACGTCGTCCAATTTGGTTGATAATCGGTTGTATAATATTATC
ATAAAACCAACTGGGATAACACAGTCAATAGTGGTGTAGGCCAAACTGTA
AAGTATCAGGTTATACAGTATATCTGGTAGAAGTTGATCCAACTTCGTGT
ATAAATACTCGATTATAAATGCAACTAACACCATGAAAAANAAGTATATC
TGGTAGAAGTTGATCCAACTTCGTGTATAAATACTCGATTATAAATGCAA
CTAACACCATGAAAAAATAGGCGaatattgttttagctttatgATTGCTC
GTACAACAGAATGGTTTTGTAATGGCTCGATAGCGGTCATATGCTACTCC
GCATAATGAGAATATAGTAACCAACATACAGACGTTTGAAGCACGTGCTA
GAACAAGTGAGAAATATTTCTGATCTCGAATCACAACAAATAATGCGAAG
CCACATGTGCNACCAACATACAGACGTTTGAAGCACGTGCTAGAACAAGT
GAGAAATATTTCTGATCTCGAATCACAACAAATAATGCGAAGCCACATGT
GCAAGTGAATAAATCACTGATTGCTAGTAACATTATCCATATATGATACG
TAATCATACCTTCGATTCTATTCTTAGTGACAAAGAATATAACAATAAGG
AAATTACCCACAATTCCAAATGTGAATAGAAATATACAGAAAATGAGCAT
TGGGATGTCCATGATGTTTGATGCTTTAAATGTTTGATCGTTGTATATGA
ATGTTGAACTGTTGCTGATGAATGTAAGATTAGATGAGTTTGAAGATTCC
ATCATTATCTTGGTGAAAATTTCCGGAGATGATGTCCTTATTACCTTACG
GTTAGGCTGTTTTGTATACCAGCTTGGTCACTGGATCTCGGCTTGTTATT
AGGTCACGGCTGGTTATTCGGTCACGGTTTGATCAATAGATCACAACTTC
TTCCCGGATAACGGCTTGTCCCTGGACCACGGGTTTTTACTGGAATACTG
CTTGTTTCTGGGTCAATGCTTACTACTGGATGATGGCTTGATATTCAAAT
GGCTTGCTACTGGATGACAGTTTGATACTGGATGACGGCTTGCTACTGGA
TGACGGCTTGCTACTGGATGACGGCTTGCTACTGGATGACGGTTTGATAC
TGGATGATGGCTTGCTACTGGATGACGGCTTGCTACTGGATGACGGCTTG
ATACTGGATGACGGCTTGATACTGAATGACGGCTTGATATTCGAACGGCT
TGTTTCTGGAATACTGCTTGCTACTGGAATACTGCTTGCTACTGGATGAC
GGCTTGCTACTGG Run BLAST on NCBI protein sequence of TCONS_00041413-protein >TCONS_00041413-protein ID=TCONS_00041413-protein|Name=TCONS_00041413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MWLRIICCDSRSEIFLTCSSTCFKRLYVGXTCGFALFVVIRDQKYFSLVL
ARASNVCMLVTIFSLCGVAYDRYRAITKPFCCTSNHKAKTIFAYFFMVLV
AFIIEYLYTKLDQLLPDILXFHGVSCIYNRVFIHEVGSTSTRYTV Run BLAST on NCBI transcript from alignment at sc0002853:7636..8948 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041413 ID=TCONS_00041413|Name=TCONS_00041413|organism=Clytia hemisphaerica|type=transcript|length=1313bp|location=Sequence derived from alignment at sc0002853:7636..8948 (Clytia hemisphaerica)
CCAGTAGCAAGCCGTCATCCAGTAGCAAGCAGTATTCCAGTAGCAAGCAG
TATTCCAGAAACAAGCCGTTCGAATATCAAGCCGTCATTCAGTATCAAGC
CGTCATCCAGTATCAAGCCGTCATCCAGTAGCAAGCCGTCATCCAGTAGC
AAGCCATCATCCAGTATCAAACCGTCATCCAGTAGCAAGCCGTCATCCAG
TAGCAAGCCGTCATCCAGTAGCAAGCCGTCATCCAGTATCAAACTGTCAT
CCAGTAGCAAGCCATTTGAATATCAAGCCATCATCCAGTAGTAAGCATTG
ACCCAGAAACAAGCAGTATTCCAGTAAAAACCCGTGGTCCAGGGACAAGC
CGTTATCCGGGAAGAAGTTGTGATCTATTGATCAAACCGTGACCGAATAA
CCAGCCGTGACCTAATAACAAGCCGAGATCCAGTGACCAAGCTGGTATAC
AAAACAGCCTAACCGTAAGGTAATAAGGACATCATCTCCGGAAATTTTCA
CCAAGATAATGATGGAATCTTCAAACTCATCTAATCTTACATTCATCAGC
AACAGTTCAACATTCATATACAACGATCAAACATTTAAAGCATCAAACAT
CATGGACATCCCAATGCTCATTTTCTGTATATTTCTATTCACATTTGGAA
TTGTGGGTAATTTCCTTATTGTTATATTCTTTGTCACTAAGAATAGAATC
GAAGGTATGATTACGTATCATATATGGATAATGTTACTAGCAATCAGTGA
TTTATTCACTTGCACATGTGGCTTCGCATTATTTGTTGTGATTCGAGATC
AGAAATATTTCTCACTTGTTCTAGCACGTGCTTCAAACGTCTGTATGTTG
GTNGCACATGTGGCTTCGCATTATTTGTTGTGATTCGAGATCAGAAATAT
TTCTCACTTGTTCTAGCACGTGCTTCAAACGTCTGTATGTTGGTTACTAT
ATTCTCATTATGCGGAGTAGCATATGACCGCTATCGAGCCATTACAAAAC
CATTCTGTTGTACGAGCAATcataaagctaaaacaatattCGCCTATTTT
TTCATGGTGTTAGTTGCATTTATAATCGAGTATTTATACACGAAGTTGGA
TCAACTTCTACCAGATATACTTNTTTTTCATGGTGTTAGTTGCATTTATA
ATCGAGTATTTATACACGAAGTTGGATCAACTTCTACCAGATATACTGTA
TAACCTGATACTTTACAGTTTGGCCTACACCACTATTGACTGTGTTATCC
CAGTTGGTTTTATGATAATATTATACAACCGATTATCAACCAAATTGGAC
GACGTCACAAAAC Coding sequence (CDS) from alignment at sc0002853:7636..8948 >TCONS_00041413 ID=TCONS_00041413|Name=TCONS_00041413|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at sc0002853:7636..8948 (Clytia hemisphaerica)
ATGTGGCTTCGCATTATTTGTTGTGATTCGAGATCAGAAATATTTCTCAC
TTGTTCTAGCACGTGCTTCAAACGTCTGTATGTTGGTNGCACATGTGGCT
TCGCATTATTTGTTGTGATTCGAGATCAGAAATATTTCTCACTTGTTCTA
GCACGTGCTTCAAACGTCTGTATGTTGGTTACTATATTCTCATTATGCGG
AGTAGCATATGACCGCTATCGAGCCATTACAAAACCATTCTGTTGTACGA
GCAATcataaagctaaaacaatattCGCCTATTTTTTCATGGTGTTAGTT
GCATTTATAATCGAGTATTTATACACGAAGTTGGATCAACTTCTACCAGA
TATACTTNTTTTTCATGGTGTTAGTTGCATTTATAATCGAGTATTTATAC
ACGAAGTTGGATCAACTTCTACCAGATATACTGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041413-exon-sc0002853-1491911889:7636..8948 | TCONS_00041413-exon-sc0002853-1491911889:7636..8948 | Clytia hemisphaerica | exon |
| TCONS_00041413-exon-sc0002853-1510915933:7636..8948 | TCONS_00041413-exon-sc0002853-1510915933:7636..8948 | Clytia hemisphaerica | exon |
| TCONS_00041413-exon-sc0002853-1575043694:7636..8948 | TCONS_00041413-exon-sc0002853-1575043694:7636..8948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002853 | supercontig | sc0002853:7636..8948 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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