TCONS_00041380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041380
Unique NameTCONS_00041380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041380 ID=TCONS_00041380|Name=TCONS_00041380|organism=Clytia hemisphaerica|type=transcript|length=1586bp
CAGGTTCTGAATGAGGAGATTACACCGACCATCAAAAAGTTGAAGGAAGA
ACGTTCGTCTTACTTAGAATACCAGAAAGTGATGAGGGTTATTGAGCATC
TCACCAGACTTTATGTGGCTTACGAATTCACTAAAGCCGAGGAGTTCAAA
GAGAAAGCAGGTTCAGAACTCGAAAAAATGAACGAGACTATTTCAACACT
GAGTGCTCGCAACCAAGAAATCAGTAAAGAAATTGCAAGGATTGACGGAG
AAATCGACGAATTGCAACGGAAGAAAGACGAGGTACTTGGCAAGATACAC
TATGGCCTGATGATTGGACTGCCGTTACCAAGGACGGTAAAAGATCAGCA
CAATTTGAACAGACATTCTTAGTAACGGAAACCGGTATCGATATTCTAAC
AGCAAGGAGTAACGGACGACCTTATTTTATGGACCAACTAGAAGGAAAAC
TTTTATAATGAGTAATTATAATCCTCTCTCTATGGCTCCTAAAACTGGTG
AGAATACCTTTCTCGTTGACTTATAGCCTGTCAAACTGGCTTTCAGTCGT
CGTTTAAAATCAAGAATGCTTCATTTTCCGCTTTCaaaagaaactctcat
aaaaagCCGAATCTCACTTTTGGAAAACCCGACAGATGGATAGATACCGT
TTTTCTATTCCGTTTTTCCGATCAATGTTAACTAACAATCATCTTGAACA
CAATGACAAACATTCCATTGTTTGATGGAAGGGTGTACTTTATGAACATC
GTACTGAACTTGAGTTTTAAAACCAATACAAACGATcgaaatgagaattt
taaacGGCACGATCCTTACGGAATCTCCGTGATTTTTCCTTGTCTAATTC
TATTAGCGATGCTTTTATCTTAATATCTCTAAGAATTAAGAATCATGAAT
TTCGACTTCGAAGTTTTTAAACTTGCTTCGAATTTTGTAACATTTGCTAA
TAAATGGGCTAATCCccaaaaatacatgttttttttataaggacaaacta
tataagaacataaggcttcgctggccaaaatctTGAGGCTTTGCGAACTC
TAAAACATCCGATTTCTTAGAGaaatggaccaaaatactcacaaaatggt
gaaaatcagaacatgttaagaacacttttagcccaaaactcaaaaagtta
ataacaaccgaaggcttaaaaattttagatgttcttataaagaaaacgtg
taccTCTTATGTTGAGAAAGTCATCATGTTCATTATGTTCAAACGCACCC
CTTCCCCCCAATTATTTTGGATTTATAGGTACCACTCCCTTAGATTTGTA
TCTACATTTTACAAGGCTTACCCTACTTCTTTAACAGTTGACTTTTCAGG
CTGTTAAGCAGGGCCCACGCCACCGGTAAGGGATTGCCCACCAATTATTT
CGGATTTATAGGTACCACTCCCTTAGATTCGTATCTACATTTTACAAGGC
TTACCCTACTTCTTTAACAGTTGACTTTTCAGGTTGTTAAGCAGGGCCCA
CGCCACCGGTAAGGGATTGCCCCCctcccccacttttttgcaaagtagaa
atttttggttgcgcctcctttgACTCTATAttcgtg
Run BLAST on NCBI

protein sequence of TCONS_00041380-protein

>TCONS_00041380-protein ID=TCONS_00041380-protein|Name=TCONS_00041380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
QVLNEEITPTIKKLKEERSSYLEYQKVMRVIEHLTRLYVAYEFTKAEEFK
EKAGSELEKMNETISTLSARNQEISKEIARIDGEIDELQRKKDEVLGKIH
YGLMIGLPLPRTVKDQHNLNRHS
Run BLAST on NCBI

transcript from alignment at sc0002836:3697..14757-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041380 ID=TCONS_00041380|Name=TCONS_00041380|organism=Clytia hemisphaerica|type=transcript|length=11061bp|location=Sequence derived from alignment at sc0002836:3697..14757- (Clytia hemisphaerica)
CAGGTTCTGAATGAGGAGATTACACCGACCATCAAAAAGTTGAAGGAAGA
ACGTTCGTCTTACTTAGAATACCAGAAAGTGATGAGGGTTATTGAGCATC
TCACCAGACTTTATGTGGCTTACGAATTCACTAAAGCCGAGGTTAGTTTA
TGGACCTGTATAGATTATTTTTATTATAGAGTAATGCTTTACAAATTCTC
CTCTGAGCACTAAAGGGCTCTCGCTGATTCGAACTTCAGAAATTCGAAAC
TTTTCTATGGTTCTAGACTTAATCAGATCAAAGACTTGTTATTCAACCCA
ATATCCAGTTTTTTTTTATTCTAGGGTAGTTATGCCAAATTCTTTAATCC
CACCTAGGAAATTCTCTTAAAAATACTTTCTATGTTCGACAATTGTCCCT
CTGTAATTCAAGGAGCCTTTTTGTAAGCTCGAATTAGCGAGAGTCAGATT
TGAGTATAGTATCCGGAAAACTACTATACAAACTGTCACCATATTCGGTC
TCGAGCGCCGTGTCCTACTTCTTCGTGGATAGGACCCATTCCGAACGCAT
TCGGAGTGCTCATATCATATCTTTATATTAGATGATTTCAAAGGCGTCTT
GTTTTCAAAGCTTTTGTCAAAACTCAACATAATGAAGTGTATAGTGATGT
CATTCTTTTATGTTTCCTTGACTCCTTTATTTTAGACGGCGGACTTTCTG
GCCTGCTTATTCCTATTGTTAGAGTAGGCAGTTCGCAGAAAATTGCCTGT
TTAAAAAAAATTTGCTTCGAAAAGGTTGGAAGAAGTTATTACATTGACGA
CGTCAAGCGAGGGCAATTTGCATTGATTTGGGATGTCCGACTTTCTATTT
TACTCACAATTAGAATAGACAGGGAAAGAATGGCTAAGTCTCCCATGCCC
TGACGTACAACTGAACACGATCTTTTAATCATTTATTCAGGAGTTCAAAG
AGAAAGCAGGTTCAGAACTCGAAAAAATGAACGAGACTATTTCAACACTG
AGTGCTCGCAACCAAGAAGTATGTATTATCAATTTCTTTTTTTAAATCCA
CGGCCAGCCAGCTCGGCTATCTATGAACTGAACGGAACATTGAAAGGAGC
GGGGATTCGAACCGCAAATCCCTGGTTTGATAAGCTGACGCCTTTGACCA
CTTGGCCATCGCTAACGAGTTTTAGCCTCAAAACAAAGCTAGAAACTTGG
GGGCAGGCTGGAGACTTCACAAATTGTCTGATTGGGCTGAAATTTTGCAC
TTGTTCCTTGGGTGAATATCTGGGGGTAATTTTTTCATTTTTTTTTCAAA
ATTTTGAATTTTTGAGGCGTGGTCACAAGTCTTTCGCCAAAACAAGACTA
AAACTTTTCTTTTATCAAAAATTTTATTTTTTCAATTTATTTTTTTTATT
TTTTTATTTTTACAATTAGACCTACGATTAATTTAAAAAATACTGAAGTT
GAGCCAGTGCGGTTAGCACGTTCGACAGTTAAACTACAGTTCACTGTATT
CATTTCTGTGTTTTTAGATCAGTAAAGAAATTGCAAGGATTGACGGAGAA
ATCGACGAATTGCAACGGAAGAAAGACGAGGTAAGATTTACATTCCCTCT
CAAATAACACTTGAATTAATTTTGATGTCCTGTTTGTTATGTTATAAGAT
TTAAAATATGCTCAAAATGGTCGTGCTAATGGGCTTTCCTTTTTAAATAT
CACAGTGATATTGTGTTGTTTTGATTCGAAATACATGTTTGATCATTGAG
TTTATTAAAACGTTAGAGATGAATCTTCAGCTTAAACAAGAGAAATTGAA
GCTTTAAACTTTGTGTGGCTTTTAAAATGACGAATTGAATCTAGCGGCTT
CTTTTTTTTCCACGTGACATTTTCTACGAAATCTAGCGATATTTAATATT
TGAAAAACATGTGGGTCATGCGTTTCAGTTGTGGGATAAGTTGGTGTCTC
TCTCGGAATATATTTCTACATTCATGAAGAGTGTCTATGCAAATTTTAAA
ATTCGAATCATCTCACTAATACCTTCCTTCTTGAATCTATAATTCGATAT
TAACCTGTGTTTATCGGACTAAGGAGACATCCCACTACCTTATCGGCCCT
TTTTACACCGGTCCTTATTACGCCACATCCAAATTTTGGGCCTACGCCAA
TTAGGGTCGTTAATAACGCCAAAATTTGTAAAAAATGGCTACTTGTGCTT
CAAAATAGTAGATAATGACTCAGTAATTCCATCGAAGATCACTGATTTTT
AAATACCGGGTGCGCCACAAAAAAGTTTCTCTCTTTAAAACTAATTTTCT
CGAAATCTAAAAATTTTAAAAGAATCATTCCTACTCCATTGGAAAGAAGA
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNAAAAAATTGTTTGGTTCCCGTCATTTCTACATT
AAAAAGTGGGGGTCGTTTGGTCGGTCGGTCGAAAATATTTCTCTGTTAAG
AAGAAGCTACATCTTGTTGAAAGGGAATCCATGTGGACTGATCCGAATTA
AAAAATTGAGAAACCGTGGATAAACTGGTTTTCGCTTTGCTGTTGAATTT
ATTTATTATAGTCGTGTGTTTATTCCGCCAAGGTGGTAAAGCGATCGCCC
AAATTCATAGACCAATCAAAAGCGAGTTTAAAGCAAAACGGGGGAAATAT
GAGCTTCACTGCATAGTTATGAATTTTAAGTTTTGCTTTCGATTATCATT
TGCGACCAGNAGCTTCACTGCATAGTTACTCTCGGGTACCTAATAGCCGC
CCCCCCCCCGCTAATTAATTTTTCGAAAATTTTCCAGCCAGGACATTCTT
ATTCCAACCCCCTCCCCCCGCTTATTAATTTTTGGGAAAATGTTTTTGAA
AGTTCCCTTTTTTGTCTTAATTCTGCTGTATTAGCCTCCTTTTCAAACAT
TTTCCACCCAGGACATTTTTATTCCAGCCCCCCCAGCTTTGGTCAGATAT
GGATATTGTCTACATCCAACAGAAAAAAATGTATCATAACTGACTGGAAT
GAAATTACTGTAACAAAAAGTTTAATTACACTATGTTTCTCTTTTATTTT
ATAGTAATGAACTATAGCTTAATTGTTTGATGTCATAGAAATCGGAAACA
GTGCTACAATGCTTAAGAGAAGTATACTTTGAGCTTCTCGTGGGGGGGGG
GCTGGAGGAGCTCTCAGGCTTGTTTTAAATAATTTTAAATCNTGGGGGGG
GGGCTGGAGGAGCTCTCAGGCTTGTTTTAAATAATTTTAAATCAAGTTAT
CAAATGTTTCATTTTGTACATTATTCAACATTTTTAGTCTACTCTGTTTC
AGTACATCTCTTACATCTGTTAACCCACTTATTAAAACTATCTAGCTAAG
CTCTATTGGCTGACCTTCCAGCCTCGGCTGGTTTATTTGGAATGAAATAT
GAAATCTTTCATTATTATTTGGAATAAGCTTTTTATTAGAGATGAGAGAA
TGATAGCATATATTTCACAAAATAAATCATTTTCTGGTTAAAAGGACGTG
AAAGAGAGGAGGCGTGCTCTTGAAATTGAAATTTCACAATTTTTGGAAAA
CCCTTAATATATTTAACTCAAATTAATATTCGAATTCTCANNNNNNNNNN
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NNNNNNNNNNNNCCTTCAGCCTCCCCACTTTTATGGTTGTTCCGCCGGGC
CTGGTTTACACAAATTGATAATTACTCCATCACATCTCCATACAAAACCT
TAACGGGTGTCCGAAAAACGAGTGGAACAGAATTTAAATAAATTAAAATC
ACCAAACTTTTAATGAGTTTCTATGACCTAATTTTACTCTATTTCTAATT
AAAAAACCTACGAAAAAAACCACTTGTATATGCACTGATGATGTTTTTTA
ATAAATCGAAAAGCTTATGCTGAAAAATATTTGTCGAAATGTTTTTTGAA
TCATAACTTTAATTTTCTGGCTATTTTATTATAAAATGGTTAAATAAATT
ATTCTCTTTTTAATTGTTCTAAACTCCAGTGGAGATAATAAGTTTCGAGG
ATTTTACTTTATGTAAATTCTATTCCACCTTTCCGGGACACAGTGTATAC
CTTAAAGGAACTTATTTTCACAGAAACTAATTTTCACTTTTCGCGAAAAT
TTGAACCCGCGAAAACGTTTGCGAACTCAAAACCGCGAAAATTGACAATT
GAAAAAAAATGCTTTTGATCCTTGTAACTTGATCTTTTTTAACAATTTTA
TTGTTTTAAAAGATCATCGAATGAAAATTAGAACAAAAACAATTTGATAT
CAATTTGAAAATATTACAAAATTTGACCGAAAACCACGAATTAAAAAATT
AGTTCCCTTAAGGTATAAGGCATTATAAACAATTTTCGTCTAAAACAGTA
CACACCGACCAGTCATATGTATAACGTTTTTGGATCAGAAAGTCAATGTT
AAAAGTTTGTCCATCTTCTCAGACGTATTTCCGTCTCAGTGAATTGTTTA
AAGAAAAATCCCGATTTCAAAATCTCGCATAATTCATCAAAAGTTTAAGA
ATATGTGCTAATTTTCTGTGTAAAATCCATTTCCCGTTTCAGATGAAAAA
CATTGCATTGACCAATGTGCATAATCATTTCTCAACTGTTTCAAAAGATT
ATAAAAGTATAACGTCCTCTGTTCCGATACTTATCCCTCTTCTGTTCAAA
CCCGGCGGAACAACCGTAAAAGTGGGGAGGCTGAAGGCTCAAAATTAGAT
AAAATATGCTAAGAATTTGAGAAAAAATTGCTTAAACGTGGAGAGACTGA
AGTCTCCCGAGTCTCCCCACTTCTGCCGGGCCTGTACAAACTATACATAA
AACACCTTTATACCTTTATCATCACTGTCAAACAGTTATCATAAACAACT
CTTGCCCACAACAGTGCCAAACGCCGACTAGATAAAAGCAGGGGTCTTAT
TAAGGCCCGACGAACGGCGAATTTTGCCGGTCCAAGGCACGAATTACAAT
TACAATTCGCCGTTCGAAAAATTCGGTTCGCCGCCTCTAGTACATATTTA
TGTTAATCAAATACACTGCGCCTGCTAAGAATTCGCCGGTCTAGAATCTA
GAAATCGCCATTCGCCAGCCTACCAAAAACAAAACAAACCCCCTGTAAAA
GTATAACGTCCTTGGTTAAGATAATCATTTCTATACAACAGTGCTCGGTT
CGGATGACTTTAACCTTCTTCTGTTTAAAAGAAACAAANGTTAAGATAAT
CATTTCTATACAACAGTGCTCGGTTCGGATGACTTTAACCTTCTTCTGTT
TAAAAGAAACAAATAGATGATTTGCGTAGGAGTTTAGTTAGTTGGATGGA
AGTAAAATTCGCGTTATCATTATAGCATCACATTAAGCTGTGTTTAAACA
GCAAGAAGTTCTCGAGTACAAATTCAATAGAAATGTCTATTTTCTTTTTC
TTCCCTTTTTTTCTCGTTCCCTAATATTTGGTTTGTTTCAATTTTCATCC
CCTGGTTTTTCTTTTCTTATTGACTTTTAATTTTTTCATTATCTTAAGTC
CTAGTTTTAGTCGGTCGAATGTCTGTCTTGCCTTCCTATTCATTTTGATG
AAAGCTGGCAGCGACTGTTTTAAGTCTAATGTCCTAACTTCTTATGGCGC
TAATGAATCATTACTCTTAGGTTCCAAATAAACGCCCCCCCCCCCGTTTA
TTAATTTTTAATTTTTTTTAACTTTCAAAGAGAAGGTCCCTTATTCTACT
CTAAATAGCCTGATTTTAGCCTATATTTACCTCATTTTGGGGTTTTCGTA
ATTACAATTTCCAACCCCCCACCCGGGCAATTAGGTGCCCCTGTTTATTA
AAAATGCCCTGTTCCGAAAATTCGGTCTTTAACGGTCCCAATAAAGGTGT
TTACTTTTTTACTGATTTGCGAAAAATGTAATCGCAAAAATCTTCAATCC
AATATAAGTTTTTTTGGGGTAGATGAAGCAATATTTTGCTACAATTCCGA
CCATACACTTTTCGCCCGTTAATTGAAATTGCATCGATATAAGTAAGTTT
AAACTGACATTCATTCAAACATCATTCATTCGCTCTGTATATGTTTTTTC
ATTTCTACCAGGTACTTGGCAAGATACACTATGGCCTGATGATTGGACTG
CCGTTACCAAGGTAAAGTACACATTTTTTTCTAAGCAACTCCAATTTTCG
GGTCAGCTCTAGGGTTGCTTAAATATTTACTTTGCTCATTTTCTAAAAAT
TTGCCTTGAACAAAAATATAGAAATATTTTTCGCGAGCATAAACTTTTGC
GAATCAGGGCAAAAACTAGGGCTTTCAATTTTCAATTCCTTCACTTCTTT
TTGACAGGACGGTAAAAGATCAGCACAATTTGAACAGACATTCTTAGTAA
CGGAAACCGGTATCGATATTCTAACAGCAAGGAGTAACGGACGACCTTAT
TTTATGGACCAACTAGAAGGAAAACTTTTATAATGAGTAATTATAATCCT
CTCTCTATGGCTCCTAAAACTGGTGAGAATACCTTTCTCGTTGACTTATA
GCCTGTCAAACTGGCTTTCAGTCGTCGTTTAAAATCAAGAATGCTTCATT
TTCCGCTTTCAAAAGAAACTCTCATAAAAAGCCGAATCTCACTTTTGGAA
AACCCGACAGATGGATAGATACCGTTTTTCTATTCCGTTTTTCCGATCAA
TGTTAACTAACAATCATCTTGAACACAATGACAAACATTCCATTGTTTGA
TGGAAGGGTGTACTTTATGAACATCGTACTGAACTTGAGTTTTAAAACCA
ATACAAACGATCGAAATGAGAATTTTAAACGGCACGATCCTTACGGAATC
TCCGTGATTTTTCCTTGTCTAATTCTATTAGCGATGCTTTTATCTTAATA
TCTCTAAGAATTAAGAATCATGAATTTCGACTTCGAAGTTTTTAAACTTG
CTTCGAATTTTGTAACATTTGCTAATAAATGGGCTAATCCCCAAAAATAC
ATGTTTTTTTTATAAGGACAAACTATATAAGAACATAAGGCTTCGCTGGC
CAAAATCTTGAGGCTTTGCGAACTCTAAAACATCCGATTTCTTAGAGAAA
TGGACCAAAATACTCACAAAATGGTGAAAATCAGAACATGTTAAGAACAC
TTTTAGCCCAAAACTCAAAAAGTTAATAACAACCGAAGGCTTAAAAATTT
TAGATGTTCTTATAAAGAAAACGTGTACCTCTTATGTTGAGAAAGTCATC
ATGTTCATTATGTTCAAACGCACCCCTTCCCCCCAATTATTTTGGATTTA
TAGGTACCACTCCCTTAGATTTGTATCTACATTTTACAAGGCTTACCCTA
CTTCTTTAACAGTTGACTTTTCAGGCTGTTAAGCAGGGCCCACGCCACCG
GTAAGGGATTGCCCACCAATTATTTCGGATTTATAGGTACCACTCCCTTA
GATTCGTATCTACATTTTACAAGGCTTACCCTACTTCTTTAACAGTTGAC
TTTTCAGGTTGTTAAGCAGGGCCCACGCCACCGGTAAGGGATTGCCCCCC
TCCCCCACTTTTTTGCAAAGTAGAAATTTTTGGTTGCGCCTCCTTTGACT
CTATATTCGTG

Coding sequence (CDS) from alignment at sc0002836:3697..14757-

>TCONS_00041380 ID=TCONS_00041380|Name=TCONS_00041380|organism=Clytia hemisphaerica|type=CDS|length=1860bp|location=Sequence derived from alignment at sc0002836:3697..14757- (Clytia hemisphaerica)
GACGGTAAAAGATCAGCACAATTTGAACAGACATTCTTAGGTACTTGGCA
AGATACACTATGGCCTGATGATTGGACTGCCGTTACCAAGATCAGTAAAG
AAATTGCAAGGATTGACGGAGAAATCGACGAATTGCAACGGAAGAAAGAC
GAGGAGTTCAAAGAGAAAGCAGGTTCAGAACTCGAAAAAATGAACGAGAC
TATTTCAACACTGAGTGCTCGCAACCAAGAACAGGTTCTGAATGAGGAGA
TTACACCGACCATCAAAAAGTTGAAGGAAGAACGTTCGTCTTACTTAGAA
TACCAGAAAGTGATGAGGGTTATTGAGCATCTCACCAGACTTTATGTGGC
TTACGAATTCACTAAAGCCGAGGACGGTAAAAGATCAGCACAATTTGAAC
AGACATTCTTAGGTACTTGGCAAGATACACTATGGCCTGATGATTGGACT
GCCGTTACCAAGATCAGTAAAGAAATTGCAAGGATTGACGGAGAAATCGA
CGAATTGCAACGGAAGAAAGACGAGGAGTTCAAAGAGAAAGCAGGTTCAG
AACTCGAAAAAATGAACGAGACTATTTCAACACTGAGTGCTCGCAACCAA
GAACAGGTTCTGAATGAGGAGATTACACCGACCATCAAAAAGTTGAAGGA
AGAACGTTCGTCTTACTTAGAATACCAGAAAGTGATGAGGGTTATTGAGC
ATCTCACCAGACTTTATGTGGCTTACGAATTCACTAAAGCCGAGGACGGT
AAAAGATCAGCACAATTTGAACAGACATTCTTAGGTACTTGGCAAGATAC
ACTATGGCCTGATGATTGGACTGCCGTTACCAAGATCAGTAAAGAAATTG
CAAGGATTGACGGAGAAATCGACGAATTGCAACGGAAGAAAGACGAGGAG
TTCAAAGAGAAAGCAGGTTCAGAACTCGAAAAAATGAACGAGACTATTTC
AACACTGAGTGCTCGCAACCAAGAACAGGTTCTGAATGAGGAGATTACAC
CGACCATCAAAAAGTTGAAGGAAGAACGTTCGTCTTACTTAGAATACCAG
AAAGTGATGAGGGTTATTGAGCATCTCACCAGACTTTATGTGGCTTACGA
ATTCACTAAAGCCGAGGACGGTAAAAGATCAGCACAATTTGAACAGACAT
TCTTAGGTACTTGGCAAGATACACTATGGCCTGATGATTGGACTGCCGTT
ACCAAGATCAGTAAAGAAATTGCAAGGATTGACGGAGAAATCGACGAATT
GCAACGGAAGAAAGACGAGGAGTTCAAAGAGAAAGCAGGTTCAGAACTCG
AAAAAATGAACGAGACTATTTCAACACTGAGTGCTCGCAACCAAGAACAG
GTTCTGAATGAGGAGATTACACCGACCATCAAAAAGTTGAAGGAAGAACG
TTCGTCTTACTTAGAATACCAGAAAGTGATGAGGGTTATTGAGCATCTCA
CCAGACTTTATGTGGCTTACGAATTCACTAAAGCCGAGGACGGTAAAAGA
TCAGCACAATTTGAACAGACATTCTTAGGTACTTGGCAAGATACACTATG
GCCTGATGATTGGACTGCCGTTACCAAGATCAGTAAAGAAATTGCAAGGA
TTGACGGAGAAATCGACGAATTGCAACGGAAGAAAGACGAGGAGTTCAAA
GAGAAAGCAGGTTCAGAACTCGAAAAAATGAACGAGACTATTTCAACACT
GAGTGCTCGCAACCAAGAACAGGTTCTGAATGAGGAGATTACACCGACCA
TCAAAAAGTTGAAGGAAGAACGTTCGTCTTACTTAGAATACCAGAAAGTG
ATGAGGGTTATTGAGCATCTCACCAGACTTTATGTGGCTTACGAATTCAC
TAAAGCCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025357XLOC_025357Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041380-proteinTCONS_00041380-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041380-exon-sc0002836-1575043694:14617..14757TCONS_00041380-exon-sc0002836-1575043694:14617..14757Clytia hemisphaericaexon
TCONS_00041380-exon-sc0002836-1575043694:13740..13817TCONS_00041380-exon-sc0002836-1575043694:13740..13817Clytia hemisphaericaexon
TCONS_00041380-exon-sc0002836-1575043694:13178..13240TCONS_00041380-exon-sc0002836-1575043694:13178..13240Clytia hemisphaericaexon
TCONS_00041380-exon-sc0002836-1575043694:5147..5196TCONS_00041380-exon-sc0002836-1575043694:5147..5196Clytia hemisphaericaexon
TCONS_00041380-exon-sc0002836-1575043694:3697..4950TCONS_00041380-exon-sc0002836-1575043694:3697..4950Clytia hemisphaericaexon
TCONS_00041380-exon-sc0002836-1510915933:14617..14757TCONS_00041380-exon-sc0002836-1510915933:14617..14757Clytia hemisphaericaexon
TCONS_00041380-exon-sc0002836-1510915933:13740..13817TCONS_00041380-exon-sc0002836-1510915933:13740..13817Clytia hemisphaericaexon
TCONS_00041380-exon-sc0002836-1510915933:13178..13240TCONS_00041380-exon-sc0002836-1510915933:13178..13240Clytia hemisphaericaexon
TCONS_00041380-exon-sc0002836-1510915933:5147..5196TCONS_00041380-exon-sc0002836-1510915933:5147..5196Clytia hemisphaericaexon
TCONS_00041380-exon-sc0002836-1510915933:3697..4950TCONS_00041380-exon-sc0002836-1510915933:3697..4950Clytia hemisphaericaexon
TCONS_00041380-exon-sc0002836-1491911889:14617..14757TCONS_00041380-exon-sc0002836-1491911889:14617..14757Clytia hemisphaericaexon
TCONS_00041380-exon-sc0002836-1491911889:13740..13817TCONS_00041380-exon-sc0002836-1491911889:13740..13817Clytia hemisphaericaexon
TCONS_00041380-exon-sc0002836-1491911889:13178..13240TCONS_00041380-exon-sc0002836-1491911889:13178..13240Clytia hemisphaericaexon
TCONS_00041380-exon-sc0002836-1491911889:5147..5196TCONS_00041380-exon-sc0002836-1491911889:5147..5196Clytia hemisphaericaexon
TCONS_00041380-exon-sc0002836-1491911889:3697..4950TCONS_00041380-exon-sc0002836-1491911889:3697..4950Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002836supercontigsc0002836:3697..14757 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.74675	3.46612	2.74087	2.28713	12.4295	10.7413	6.48333	10.7209	5.92869	6.23443	6.29069	5.8138	5.30015	4.64841	2.93844	3.28811	3.89257	3.15745	1.711	1.6349	3.52369	3.64301	5.60813	4.89934	7.24842	11.6328	2.32589	1.45231	2.89294	3.82345
Blast
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BLAST of TCONS_00041380 vs. Swiss-Prot (Human)
Match: SMC2 (Structural maintenance of chromosomes protein 2 OS=Homo sapiens GN=SMC2 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.402e-18
Identity = 53/98 (54.08%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    4 VLNEEITPTIKKLKEERSSYLEYQKVMRVIEHLTRLYVAYXXXXXXXXXXXXGSELEKMNETISTLSARNQEISKEIARIDGEIDELQRKKDEVLGKI 297
            +L EEITPTI+KLKEERSSYLEYQKVMR IEHL+RLY+AY+F  AE+ K ++  EL++M + +  L     E  K+I  ++ EI+EL+++KD+  G I
Sbjct:  198 ILEEEITPTIQKLKEERSSYLEYQKVMREIEHLSRLYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEELSENDKKIKALNHEIEELEKRKDKETGGI 295
The following BLAST results are available for this feature:
BLAST of TCONS_00041380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMC21.402e-1854.08Structural maintenance of chromosomes protein 2 OS... [more]
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