TCONS_00041361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041361
Unique NameTCONS_00041361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041361 ID=TCONS_00041361|Name=TCONS_00041361|organism=Clytia hemisphaerica|type=transcript|length=449bp
ATCTCCTTAATGGTACGCAGCTAAGACTTCTGTGCTTTGTCCACAGTAAG
GTGATTATGGACTCAAGCCTACCACTCGTCCGTACTGAATATTCTGAATT
GaataaaaagtatattgaaGTGTACAACTTCCAAATGATTGATCAAATTT
TTGTTACTGAGGATCGACCTTGGGACAAAATCAAATAAGTGATCAGAAAC
ATCAGAACGAAGTATGAAAAGGATCCTGATGGATTCAAAGACTTTATGTT
GGAGGGAAAGGCGATGTCGCGGAAAAGCTTCAGCGTTGAATGATTACGAT
GGccaaaagacttttttgaaactTAGTTGACATTTTTTCATTATGTTACA
AACTTAGagattattcttttatttttttatttcttttattcttgTATTCG
TTTAGAAGGTCACACATTTTCAATCTAAGCTATAGCTGTGGAAaatatt
Run BLAST on NCBI

transcript from alignment at sc0002826:6098..6546

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041361 ID=TCONS_00041361|Name=TCONS_00041361|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at sc0002826:6098..6546 (Clytia hemisphaerica)
aatattTTCCACAGCTATAGCTTAGATTGAAAATGTGTGACCTTCTAAAC
GAATAcaagaataaaagaaataaaaaaataaaagaataatctCTAAGTTT
GTAACATAATGAAAAAATGTCAACTAagtttcaaaaaagtcttttggCCA
TCGTAATCATTCAACGCTGAAGCTTTTCCGCGACATCGCCTTTCCCTCCA
ACATAAAGTCTTTGAATCCATCAGGATCCTTTTCATACTTCGTTCTGATG
TTTCTGATCACTTATTTGATTTTGTCCCAAGGTCGATCCTCAGTAACAAA
AATTTGATCAATCATTTGGAAGTTGTACACttcaatatactttttattCA
ATTCAGAATATTCAGTACGGACGAGTGGTAGGCTTGAGTCCATAATCACC
TTACTGTGGACAAAGCACAGAAGTCTTAGCTGCGTACCATTAAGGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025342XLOC_025342Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041361-exon-sc0002826-1491911889:6098..6546TCONS_00041361-exon-sc0002826-1491911889:6098..6546Clytia hemisphaericaexon
TCONS_00041361-exon-sc0002826-1510915933:6098..6546TCONS_00041361-exon-sc0002826-1510915933:6098..6546Clytia hemisphaericaexon
TCONS_00041361-exon-sc0002826-1575043694:6098..6546TCONS_00041361-exon-sc0002826-1575043694:6098..6546Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002826supercontigsc0002826:6098..6546 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.324453	0.641363	0	0	0.162087	0	0.20708	0	0	0	0	0.112497	0.320368	0.10172	0	0	0	0	0	0	0	0.257337	0	4.55257	2.44353	0	0	0.241412	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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