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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041355 ID=TCONS_00041355|Name=TCONS_00041355|organism=Clytia hemisphaerica|type=transcript|length=2001bp
CGTGAAGAACCCATTCTTGGAGCTCGTGAAGAACCCATTCTTGGAGCTCG
CGAAGAACCCATTCTTGGAGCTCGCGAAGAACCCATTCCTAAAGATCCTG
AAATATCCATAAATGATCAAGAAACAAATAATCCTTTATCTAGCCAAAAG
TAAGTATTGGTTTCTCCACCTCATTTTGAGTTCTTGAGGAATTCCAATGA
AGTACTGTTTTTGTCAATCAGTTAGTTCGATAAAAGTATCTCTTGTTGAA
ATCTAGTCTTACTAGAACTATAGAAACTTAAGCATTGAGTTTGTAACCTG
AGAACAGATTGTCATTGTTTTCTGACCATCACGCTGACACTCTAAAAATT
TTTCAAGGGCCTTGGGAGGTTTACCATGCGGGTCAGACAAATTTTGAGCA
TTTGTTATCAGGTTACGAGTTTGTAGCTTTATGAAATGAAATAACTTTTT
TTAGACGTTGGCCTCATCCGTTCATCATACATGATCATATAGTGAGGCAA
TCGACACTAGATGTTCTTAATCAACAGCGACTGCTGAGTCAGTCTTCAAG
ATCTTGTTTACTTTCCGGTATATTCAACGAGGTTACCACCAAGTACCAAT
TGTAGTGAGTTGTTAGTTTATGTTGAGTTTATAAAGGAATGGCTAGAAAT
CAGTAAGAGTCACTGCACACAATGAAAAAGGCAAAATGCTCTAATTTGCT
ATTTCTTTGATTGAGTTGAACAACCTTAGTTAATGACCCCCTTAGATTTA
GATCCCTTAACCCTATCCAGGcggaacttttttttaaaaatttcctatTT
CCGATTTGAACACAAAGCAAGGGGATTTTTATAAGATTTGAATTGATCTA
ATTTTTGGATATCAATTTTCGCGCACGAAgcatttattttccaaaaaata
gcACTCTTACTTACAATTTTTTATGCATTAGGTTATTTTACGATTTTCTG
TAGGGAGTCTATGAAAATCCTGTATTAATTTTCACGCACCTTAACACTAT
GCATAATTTCGGTATAAAATTTTGCCCATTTTTGGGCCTCTGCGCGAAAT
TGCGCAAAAATTAGTACGCACAAAAATAAGTACCTCTGGGGTATGTTCCT
acaaaatttttcttatgcGAAAAACAAAGGTCGGATAATGACAGAATagc
tctaattttttttaaagtgagtgatccgcaaaattaaattctcacaaaaa
atttcaaatcagcgaattacaaaaattagttctcacAAAAAACAGTCCCC
TTGCTTAAGGTATGTACTCAGGAGAGTCTACAAGAGACCCAATTATCAAT
TATTTCTTTTTAGTTTTCCAACAAATAGCAACTACATTGAGATGCCAAAA
GCCATAATTGAGAAGTGGCCCCACTTGGTCAATTCCCATCACAACTATGG
CGATGCTGTCAACTTTTTTCATAGGCGGCTCAAAACCGCTTTCAAGAACC
TTCGTGGAAAAATTCACACCGATTCCAGAAATCATCAACAAACGAGTAAA
ATTTGGTAAACGTCGTGCAGTTGGAGATGGTGAATCAAATGTCTCCAAAC
GGACTAAATTAAGTTGGGGTGTCCCCAACTATCTGCCTCCGAGAATTGAA
GGTGAAAACGATCAATCGCAGATGGTACACATCAATACCATTCAAAAAGA
GTCCCGGAAAGTTTCAGCTCAAAGGGACCATCAGAGAAGTTCTTTTGCAA
TGGTGCAAACATTTCCGGATAGACGTAAAATGATTGTTAGCGAAGTTAAT
CCGATTGCCATAATAATAGAACAATATCCACTGTTGGCTTCAAAGAGCGA
GATGAGATATTCTTTAAATTGATTTGTACTGCAGCTCCGGGGGTCATAGA
GacttggaaaatttttcaatataaACACCTTCAGGAAGCAATCTGCTTGA
TGGCATGATAGGGTTTTTTCGTACAAGACAGTATGCCGGTTGGTACCGTG
GTGATGTGCCAtttaaatttgatgaaatcacttagtactaactgcttgac
c Run BLAST on NCBI transcript from alignment at sc0002825:1030..3030+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041355 ID=TCONS_00041355|Name=TCONS_00041355|organism=Clytia hemisphaerica|type=transcript|length=2001bp|location=Sequence derived from alignment at sc0002825:1030..3030+ (Clytia hemisphaerica)
CGTGAAGAACCCATTCTTGGAGCTCGTGAAGAACCCATTCTTGGAGCTCG
CGAAGAACCCATTCTTGGAGCTCGCGAAGAACCCATTCCTAAAGATCCTG
AAATATCCATAAATGATCAAGAAACAAATAATCCTTTATCTAGCCAAAAG
TAAGTATTGGTTTCTCCACCTCATTTTGAGTTCTTGAGGAATTCCAATGA
AGTACTGTTTTTGTCAATCAGTTAGTTCGATAAAAGTATCTCTTGTTGAA
ATCTAGTCTTACTAGAACTATAGAAACTTAAGCATTGAGTTTGTAACCTG
AGAACAGATTGTCATTGTTTTCTGACCATCACGCTGACACTCTAAAAATT
TTTCAAGGGCCTTGGGAGGTTTACCATGCGGGTCAGACAAATTTTGAGCA
TTTGTTATCAGGTTACGAGTTTGTAGCTTTATGAAATGAAATAACTTTTT
TTAGACGTTGGCCTCATCCGTTCATCATACATGATCATATAGTGAGGCAA
TCGACACTAGATGTTCTTAATCAACAGCGACTGCTGAGTCAGTCTTCAAG
ATCTTGTTTACTTTCCGGTATATTCAACGAGGTTACCACCAAGTACCAAT
TGTAGTGAGTTGTTAGTTTATGTTGAGTTTATAAAGGAATGGCTAGAAAT
CAGTAAGAGTCACTGCACACAATGAAAAAGGCAAAATGCTCTAATTTGCT
ATTTCTTTGATTGAGTTGAACAACCTTAGTTAATGACCCCCTTAGATTTA
GATCCCTTAACCCTATCCAGGcggaacttttttttaaaaatttcctatTT
CCGATTTGAACACAAAGCAAGGGGATTTTTATAAGATTTGAATTGATCTA
ATTTTTGGATATCAATTTTCGCGCACGAAgcatttattttccaaaaaata
gcACTCTTACTTACAATTTTTTATGCATTAGGTTATTTTACGATTTTCTG
TAGGGAGTCTATGAAAATCCTGTATTAATTTTCACGCACCTTAACACTAT
GCATAATTTCGGTATAAAATTTTGCCCATTTTTGGGCCTCTGCGCGAAAT
TGCGCAAAAATTAGTACGCACAAAAATAAGTACCTCTGGGGTATGTTCCT
acaaaatttttcttatgcGAAAAACAAAGGTCGGATAATGACAGAATagc
tctaattttttttaaagtgagtgatccgcaaaattaaattctcacaaaaa
atttcaaatcagcgaattacaaaaattagttctcacAAAAAACAGTCCCC
TTGCTTAAGGTATGTACTCAGGAGAGTCTACAAGAGACCCAATTATCAAT
TATTTCTTTTTAGTTTTCCAACAAATAGCAACTACATTGAGATGCCAAAA
GCCATAATTGAGAAGTGGCCCCACTTGGTCAATTCCCATCACAACTATGG
CGATGCTGTCAACTTTTTTCATAGGCGGCTCAAAACCGCTTTCAAGAACC
TTCGTGGAAAAATTCACACCGATTCCAGAAATCATCAACAAACGAGTAAA
ATTTGGTAAACGTCGTGCAGTTGGAGATGGTGAATCAAATGTCTCCAAAC
GGACTAAATTAAGTTGGGGTGTCCCCAACTATCTGCCTCCGAGAATTGAA
GGTGAAAACGATCAATCGCAGATGGTACACATCAATACCATTCAAAAAGA
GTCCCGGAAAGTTTCAGCTCAAAGGGACCATCAGAGAAGTTCTTTTGCAA
TGGTGCAAACATTTCCGGATAGACGTAAAATGATTGTTAGCGAAGTTAAT
CCGATTGCCATAATAATAGAACAATATCCACTGTTGGCTTCAAAGAGCGA
GATGAGATATTCTTTAAATTGATTTGTACTGCAGCTCCGGGGGTCATAGA
GacttggaaaatttttcaatataaACACCTTCAGGAAGCAATCTGCTTGA
TGGCATGATAGGGTTTTTTCGTACAAGACAGTATGCCGGTTGGTACCGTG
GTGATGTGCCAtttaaatttgatgaaatcacttagtactaactgcttgac
c
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041355-exon-sc0002825-1491911889:1030..3030 | TCONS_00041355-exon-sc0002825-1491911889:1030..3030 | Clytia hemisphaerica | exon |
| TCONS_00041355-exon-sc0002825-1510915933:1030..3030 | TCONS_00041355-exon-sc0002825-1510915933:1030..3030 | Clytia hemisphaerica | exon |
| TCONS_00041355-exon-sc0002825-1575043694:1030..3030 | TCONS_00041355-exon-sc0002825-1575043694:1030..3030 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002825 | supercontig | sc0002825:1030..3030 + |
Blast
The following BLAST results are available for this feature:
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