TCONS_00041301 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00041301
Unique Name	TCONS_00041301
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1035

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002792:2786..7891+

transcript sequence

>TCONS_00041301 ID=TCONS_00041301|Name=TCONS_00041301|organism=Clytia hemisphaerica|type=transcript|length=1035bp
GGAATCATGTCTCGCCAGCAAAGAGAACGTAAACCATCAGCCAAACTGGC
GGACAATTTTGgGGAAGACACTGGACCTgtgttaaagattatttttacaG
AGGAAGAATCCAACGGAAAACGCCTAAACCTAGCCCTCCCATTTTCAACT
TTAAAGCCAACCAACCATACTGGGGAACTAGTACCGCTCGAAAACCTTAA
GGAGATGGAAAAGTACAATTTCTTCTACCCCCATCTTAAGCAATATTATC
CAGCACTCCTCATTGAGatcaaaggaagaaaaaaacgaAGACTGAGTAAa
gAAGCAGACAAAGAGAACACGGAGGAAAATGATGGTGGGGATGCAAACGA
TTCCAATCAAGacgAAGTGAGAAgaccaaaaacaaagaaaaagcgCCAAC
AAGAACAAAACGATGACAATCCCGAGTCAAGCAAGACCAATCCAACAGAA
ATCACTAAAGAAACTccaaaggaaaaaaagaaagaggatgaaacaaaaaa
caaaaaacaaaaagAGAAAGAAAACCAATCAAAGAAGGCCAAGGCAAATA
CATCAAATTTGCTTGCACAGGAAATCCTTGCGAAAGCAATCAATCTTAAT
ATCAACGACAAGTTGTTGACTGAATACGTGGACATTGATGATATTCAAGA
AAAAGCCCAAAATATGGACAGTTCTCTAGATTTCAACATTCAAAGAACAA
ACAGAAGTCAGTCAATAGAAAACCAAACAATCGACACAATTGACACAGCA
ACACAAAACCATACAGTGTTGAAACCTAAATGTCAAGCTGAAGTACCTGA
GGAAAATGGGATCTGGTTTACTCCAAAGACGACCAAAAGACTATGTGATC
AGCGCACCAACACATTGAAACTGCCAAGTCCagtattttctgaaaaagTT
TCAGATAATGAGAAATCCCCAATCTACCAGCGCCTGGAACCAAAAGCTAA
AGTGTCCTGTACCAATTGCAGAACTGTAATGGCTGAATTGGAGGAGACCA
AAagaaaactgaaagaaaaagAAAATCAATTGAGA

Run BLAST on NCBI

transcript from alignment at sc0002792:2786..7891+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00041301 ID=TCONS_00041301|Name=TCONS_00041301|organism=Clytia hemisphaerica|type=transcript|length=5106bp|location=Sequence derived from alignment at sc0002792:2786..7891+ (Clytia hemisphaerica)
GGAATCATGTCTCGCCAGCAAAGAGAACGTAAACCATCAGCCAAACTGGC
GGACAATTTTGGTAAGTGACATTTGTTTCAATAGAAGGTGTCGAAGATAC
TTGTGAGGTGCAGTGTAATTTCTTCCAGcacatatttttcttataagcaa
ccttaattttttgGTCAGGGCTTACATTCATTctaactttgtgaaaaatt
gggtcgtacttaaaaacatttcaattttcttttaggGGAAGACACTGGAC
CTgtgttaaagattatttttacaGAGGAAGAATCCAACGGAAAACGCCTA
AACCTAGCCCTCCCATTTTCAACTTTAAAGCCAACCAACCATACTGGGGA
ACTAGTACCGCTCGAAAACCTTAAGGAGATGGAAAAGTACAATTTCTTCT
ACCCCCATCTTAAGCAATATTATCCAGCACTCCTCATTGAGatcaaagga
agaaaaaaacgaAGACTGAGTAAaggtattttttctttcatacatTATAA
TAACACACTAAGACAATAACGTGCATCTGAGAGTGATCTTGTTAAGAAGT
ATCATCTGGTCGTTAGATATCTGTGAGCTCCCATCCAATTCGagctagaa
aaagaaaatacacGCTTtatagatattcttataaaaaaagcgtgtaccat
CAAATAGAAGCTAAACAATgacaatacactttttttaagaaacaattTTT
ACCAAGCAGTctcaatgtttcttacatgtctatactttttgacatacatg
tttttttataagcataacgcttataagcatatgaagactcagatttgcag
aatacctaagcataacatgagcatatatgtcagcctaaaatatttttcaa
gtggtcattttctgtttatgtttcatttttatctgatttGGCAGAGGTCA
AGTAAATAATAAGACATTCCACAGCTAGCTACCATTCCACTGCTTCTAAA
ATCTGagcaaattttttacaaaatttctgaaatttcattaaaaacttggt
tcggggtgaatcataagcataattcttaagcatgTAATAAGCATAaacct
ggatgctttgagaacttaagcatacacgagcctgaccaaggggcatacac
ttgcttataaaaaaattgagtaatttggctaagaacatttctgtatgctt
attaatagtgatttttatagataaacatgcaatttttttttcaaaaatcg
ggctccttcCCATTCTAaggtccaaaaatcagaaaatttcaaattaatcc
TTACCTCATTCTTTTCATTAGAAGCAGACAAAGAGAACACGGAGGAAAAT
GATGGTGGGGATGCAAACGATTCCAATCAAGGtttgttctaaaaaaataa
ataaaccatGTTAATTCAAAAATGATAGCCTTATTAAGTGTAGAATAAAA
TATCAACATAGTAGTTGTTTATTAAACTGGAGAAAAAGTCCTTTTCCTTT
TTAAATCAAACTCGTTGCACCCAATATTACTTATTTAAAAGCCTTTAAAA
AGTAgctatatatatttttcttttaaagacgAAGTGAGAAgaccaaaaac
aaagaaaaagcgCCAACAAGGTAAATCCTAGTTCAGTATAAGTCTAGACC
ATGATATCTTCCAGGTGTTTAGGTCCCTCCACATGTTTCTTTATCTACAT
TCAggggggtcttgggttttgatgaaccaaaagcaagggggaTGTGGGGG
GGTCATCTTAGATAAGGGgggatcttccttgaattatgcaaaatttcaat
tttttatttatactgattttctaaggggggNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGGGCCGGTCTTGACCCTTCTAGAAACTATGCTCC
ATCTGGGGCCGAAAACCCCCATTTGGTATTCTACCCCCACCTACCCCCAT
ATCAATTTCCTGCAATAAAGACACTAATGTTGAACATGGACAAATTTCTT
CCCCCTCTTCCCATAAGATTTCCTGAAATCCCCCATTTACATTAGCCCCC
CATCAAGGTGAAAGTATTCAGTTTCTTTCACTCCCTCCAGGACAATCTTG
TTGTAACAAGTAAATTTTATCAAAGATAAGTTTGTTAGATACCTTTATCA
CTCCATTAACCATAGAACAAAACGATGACAATCCCGAGTCAAGCAAGACC
AATCCAACAGAAATCACTAAAGGTTTGTCAGAATGATacctaaaacaata
aaaaagatatGAAGCTCGCAAAGGAAAAAAGTCCGAAATCTGCAGAACAT
TGAGCTAATATTCACTAACAGAGCTTTCAACTTTTTCCATTTAAGAAACT
ccaaaggaaaaaaagaaagaggatgaaacaaaaaacaaaaaacaaaaagg
ttagTTGACCGTGAAAGTTCATTGTGAAATATTAGCatacatttcaaaat
ttatttcatctTTGAATGATTTTGATGTTATTAGTGACAACTTTTTATTA
AGTTTCAATTTTTACCAACAGTTTCattactaccttaaaggaagaaattt
tggcgggaacttaatttggcggatttggtttttctgccatctgccaaatt
aaatgcccgccaaattaaactttttgaaaatagaatcttttaaggtgttt
ttacattttttgctgtttttacgccatcttaaggatacatttttcagcaa
acgccaaaatTCCCgacaaatttagttttttcggtcaaccgccaaattaa
cttcccgccaaaatttcttcctttaaggtagttgaATGACCCTAATTTCT
TTAGAGAAAGAAAACCAATCAAAGAAGGCCAAGGCAAATACATCAAATTT
GCTTGCACAGGAAATCCTTGCGAAAGGTAAAAGCCATTATAGCAATATTC
CAAGACTAAAAAAGGCTGTGACTTTCTTTATACAATGCAAATGGAAATAA
GAACCAAGCTAGAATTTTTTGACTGATGTTGAATCAATATGGCCAATATG
ACTAAATATTTGTcatctttcttcttttagatGCAGCAATCAATCTTAAT
ATCAACGACAAGTTGTTGACTGAATACGTGGACATTGATGATATTCAAGA
AAAAGCCCAAAATATGGACAGTTCTCTAGGTAATCAATATTTGAGATATG
TCACATTGGATAATGTAACAAAATGTGTATGTATGGAATATAAAATTAAT
ACTGACACATTGCTTTAAGTTTCAAGAACTGCAccactttttctatttta
atttgTTATTACTTATCTTCAAAATGGAGAAACTTAAATTCTAGTACCTA
GATCGTTATAATAACATTTTTTGCAGATTTCAACATTCAAAGAACAAACA
GAAGTCAGTCAATAGAAAACCAAACAATCGACACAATTGACACAGCAACA
CAAAACCATACAGTGTTGAAACCTAAATGTCAAGCTGAAGTACCTGAGGA
AAATGGTAAATTCTTCTTTTAGGTCTTTCCTAGATTTgtaactcgcactt
ttgatttttcaactcgcaattttaatttgcaactcacactattgattttt
caactcgcgattttaatctgcaactcgcgattttaatctgCAACTTGTGA
TTTTGATGTCTTAAcgtgaaattttcaacttgCAACTCACacttttattt
ggttaaaatagcaactcgtaactcgcaactcgcatatttgatagcaactc
gcaactcgtaggaccaactcgcaactcgtatgTTAAAAATCCACTTCCTT
ATATATGACCAAAGTCTTTTCTCATACAGTTCGTTCttatcgaaaaaaaa
tatttgtgcaGTATAACTCGGAAGATATCAAATAAACAATGTCATTACCT
TAAGGGATCTGGTTTACTCCAAAGACGACCAAAAGACTATGTGATCAGCG
CACCAACACATTGAAACTGCCAAGTCCagtattttctgaaaaaggtaATG
ATAAAATGGTACAAAATTGTTGAAATAATCCAAATATCAGTTATTGCTAA
AGGAAGTTCTATTAGGGATCCAAAATATATAATGCTCTGAGGGAGAAGAA
GTACATTGCCAATATTAAGCATAGATAATTGAACAATTTCTAAGATACAC
TATGAACagtttgaaatattattttgatagcAGCTTAACAAAACCAAAAC
TCTTTCCTGTTCATTAGTTTCAGATAATGAGAAATCCCCAATCTACCAGC
GCCTGGAACCAAAAGGTACACAATCTTATTTCATGGCttgtaaaaataat
aatattacaACTGTCTAAATAGGGTTGTTTTTGTTTGATATTTGGACTTT
TCCTGACGACTGACACCAAATCAAGCTGCATTCCTTTTCAATCTTTAAGC
ACTTCAAAACCAAACTAAAACTGATATGTTTGTTGTAACTGTTTTTGTTT
GATTCATGTACAATTAGTTTTGAAACGACTTTTAAAGACCTTTAACTTCT
TTAATAAGGTAACAATAAATTATCATTAGTAAGGGAATAAGCATATGACa
acaaatctttaaaatttataGCTAAAGTGTCCTGTACCAATTGCAGAACT
GTAATGGCTGAATTGGAGGAGACCAAAagaaaactgaaagaaaaaggtca
gtttACACCACTTTAATcacttaataaaatttttgatattgcTATTCAAT
AAAAGTTGCATCATGTCCattcattttttctgatttgcTTAATTGTTAAA
ATTATGTAGAACTTTAAAATTGCAACAATGAAAACTAAAACAAAAGTTAA
TCATCCGAATGCTTAAACATCTCAGGGCTGGTTAGGAAATCAGCGATAAG
TAACACCTTTAAGAATGTAACAATAAGATTATCTTCTCTTAGAAAATCAA
TTGAGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_025289	XLOC_025289	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002792	supercontig	sc0002792:2786..7891 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.054724	0.0972585	0.333008	0	0.139758	0.0697289	0	0.124964	0.316778	0	0.0886997	0	0.133973	0	0	0	0	0	0	0.0461797	0	0.0565546	0.272207	0	0.602538	0	0	0.243677	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00041301 vs. Swiss-Prot (Human)

BLAST of TCONS_00041301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00041301 (transcript) - C. hemisphaerica