TCONS_00041294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041294
Unique NameTCONS_00041294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length891

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041294 ID=TCONS_00041294|Name=TCONS_00041294|organism=Clytia hemisphaerica|type=transcript|length=891bp
gaaATGTGGTCGAAAGAGACGATGGGGCGGATGATGAATGGTCCAGTATA
AAAGATGATATGATGCAACCTGATCGTCTCTTAGATGCCAAATCCAAAGA
AAGTCATATCGTTCATTGTCCTTACTATCCAATGGAAAAACACGAATATT
GGTGGGTGTACTTGATCAATAAGAAGAATAATCAATTAGTCACAGCTCCA
CAGCAAGTCACCAATCTCAAAGTTACTGAAAAGGTGCAATTGAAATTCTC
AGCACCAGAGAAACCAGGCATTTATCAATACATTGTGGTGGTCAAGTCAG
ATTCTTATGTTGATTTCGATATGACTAAACCTCTAAAAGTGGCAGTATCA
GAAGCGAAAGATTTCGATCCTGGAGAGCATTGGAATTATTCGAGTGAAGA
TGACGATAAAGATGATTCCGGTGAAAGCGTTTACgaaactgaagaagaag
atgatgatgacgatgagGATTAATCACGCCCTCGTGGTGGAACGCCCGTC
AAACAACCGCCCGAAGAGTCAAAAGTGTCAAGGGTGTCCGAACTTCAGAT
CATGGTCTCTCAGACAGATCTTTTTAGACTTGTCCAGGGAATACTCgttc
caaaaaaacttttcggaAAAGGTTACCAcatgtttgatttttaaaacaaa
tttcagACAATTCTAGCTTCTCTTTTATATTGACCACGCCCAAGGGTTTT
TAGTACTTTACTTTCGCACCTCTTAAGCTAAAGTGCCGCTCGTATATTTC
CCTCTTTTTAATTATTCAGTACTGAatacaaataataaaaataagggaag
gttttttatcaatattagaaattattattattataagaaATATGTATCGG
TAGGTTTATTTTATATCTAGAAATATTTCTGTTGAATTACA
Run BLAST on NCBI

protein sequence of TCONS_00041294-protein

>TCONS_00041294-protein ID=TCONS_00041294-protein|Name=TCONS_00041294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
NVVERDDGADDEWSSIKDDMMQPDRLLDAKSKESHIVHCPYYPMEKHEYW
WVYLINKKNNQLVTAPQQVTNLKVTEKVQLKFSAPEKPGIYQYIVVVKSD
SYVDFDMTKPLKVAVSEAKDFDPGEHWNYSSEDDDKDDSGESVYETEEED
DDDDED
Run BLAST on NCBI

transcript from alignment at sc0002789:9034..11497-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041294 ID=TCONS_00041294|Name=TCONS_00041294|organism=Clytia hemisphaerica|type=transcript|length=2464bp|location=Sequence derived from alignment at sc0002789:9034..11497- (Clytia hemisphaerica)
GAAATGTGGTCGAAAGAGACGATGGGGCGGATGATGAATGGTCCAGTATA
AAAGATGATATGATGCAACCTGATCGTCTCTTAGATGCCAAATCCAAAGA
AAGTCATATCGTTCATTGTCCTTACTATCCAATGGTTGGTATAATACTTG
TTTTCTTTATAAGCATTCCGCTTATAAGCATATCTTGGCTCTTAAATGGC
AAAAATTTAAGCATAAACTAAGCTTTACCTTGAGCCTATAAAAAATTTAT
TTTCCTGATTTTGGCTGTTTTTAGCTGGGATTTTACGGATTTTCAGAATT
TCCCTCAAATTTTGCTTGATGTGATATAAGCATCCTTATAAGTATTTTTC
AGTCTTGTCAAGTCATCGATCTAAGCATCTTCGAGCCTGTTTTCGAATTT
TTGTATGCTTAAGCGAGGCCAATTTAATTGATAATCTTATGGTTAAAATG
AAAAATTGAACATAAAATTCTTAAAGCCTTGGAAAAACTAGCAAAATTTT
GAAAATTTGGGAGTCAGTGAAGCAATGCAAATAAAAATATACTATCAAGA
TGAATTAGATTTTTATTTCGATTTTTGGAATTTCAGGGTTGGTCGGGCTT
GTAAAACAATTAATCAAACTGGTCTCGCCTTATTTATTTAAAAACTTCAG
ATGAGAAACTTATGTGTTTATTTCGATTTTTTAAACTGAATTTAACTGAA
TCATTTTGGTTGGATAGGAAAAACACGAATATTGGTGGGTGTACTTGATC
AATAAGAAGAATAATCAATTAGTCACAGCTCCACAGCAAGTCACCAATCT
CAAAGTTACTGAAAAGGTTTGTCTACACTTGCAATACTAAGTGCTTAACT
TTTTTAGTTCGATTGTTTTCCAAACCCGTTTATTAAATATTTTCATCAGT
CAAGAGAAGATCTATAGTTACCTTATGTTTGGGGTACTTTGGATTTCCTA
CCCCCTCAACTCCGAACCTCCCGGGAAGTAGTTAGCACTGGCCTTAAAAT
ACATTATTTAAAGTATCTCCCAAAAGCAAGGACATGCTAAACGTTGATTT
GGTGACTTAGATTTTAAAACTTTGACTACTTTTGACTACCCACTGACCAG
AGCTCTCTTTCTCACTCTTCCTAGGTGCAATTGAAATTCTCAGCACCAGA
GAAACCAGGCATTTATCAATACATTGTGGTGGTCAAGTCAGATTCTTATG
TTGATTTCGATATGACTAAACCTCTAAAAGTAAGTACTGTTGAGTCTCTT
TAATTTGACTCTCTATTATAACTGGAATGTCTCCTTAACTCAAACAAGTT
TTCTCATCCCTTCGGATAACAACATGACTGCATAATTCCATCAAAAATTT
GCGTTCCCCGTGCTTGTTCGAGTTATGGAGACACCACTTTAGCTCGTTTC
TCAAATTTCTTATGTGATTTGGTAATAAATGCGTTCAACACGAAGACTAA
TGATGAACTAATATTTTTAACATTTGAATATGGTATACGTGCATCGCGTG
TATAATACATCTTACAAGTGTTTTGTGCATCTATTTTTATATAATCAAGC
CCCCTTCATCATTTTTTAAGATGTCTTTGAAATGACTGTTGCTCTTGTCA
CTAGGCTTGTTTTAAAAATGATTTCTTCTACGGACGCTGTTTGGATTGGA
ACGGGACAACGTAGAAATTATTCTATTCACGATATGTACCATTGCAATGT
TTTCTGATATTACATCACAGACCCAATAGCTGATTGGTTGTAAGTGACGT
AGAATCAGTCAATACGTCACTTTCAACCAGTCAGATGTTTCGTCCGTGAA
GACATTGCAATGGTGCATATCATGAATATACATTTTGTTCCTTTGCAATT
TCCTCAAATAATCCTCAATCATGTCCTGCAAATTGATATGGTGTTTTTCT
GTTATTCCCAGGTGGCAGTATCAGAAGCGAAAGATTTCGATCCTGGAGAG
CATTGGAATTATTCGAGTGAAGATGACGATAAAGATGATTCCGGTGAAAG
CGTTTACGAAACTGAAGAAGAAGATGATGATGACGATGAGGATTAATCAC
GCCCTCGTGGTGGAACGCCCGTCAAACAACCGCCCGAAGAGTCAAAAGTG
TCAAGGGTGTCCGAACTTCAGATCATGGTCTCTCAGACAGATCTTTTTAG
ACTTGTCCAGGGAATACTCGTTCCAAAAAAACTTTTCGGAAAAGGTTACC
ACATGTTTGATTTTTAAAACAAATTTCAGACAATTCTAGCTTCTCTTTTA
TATTGACCACGCCCAAGGGTTTTTAGTACTTTACTTTCGCACCTCTTAAG
CTAAAGTGCCGCTCGTATATTTCCCTCTTTTTAATTATTCAGTACTGAAT
ACAAATAATAAAAATAAGGGAAGGTTTTTTATCAATATTAGAAATTATTA
TTATTATAAGAAATATGTATCGGTAGGTTTATTTTATATCTAGAAATATT
TCTGTTGAATTACA

Coding sequence (CDS) from alignment at sc0002789:9034..11497-

>TCONS_00041294 ID=TCONS_00041294|Name=TCONS_00041294|organism=Clytia hemisphaerica|type=CDS|length=1884bp|location=Sequence derived from alignment at sc0002789:9034..11497- (Clytia hemisphaerica)
GTGGCAGTATCAGAAGCGAAAGATTTCGATCCTGGAGAGCATTGGAATTA
TTCGAGTGAAGATGACGATAAAGATGATTCCGGTGAAAGCGTTTACGAAA
CTGAAGAAGAAGATGATGATGACGATGAGGATTAAGTGCAATTGAAATTC
TCAGCACCAGAGAAACCAGGCATTTATCAATACATTGTGGTGGTCAAGTC
AGATTCTTATGTTGATTTCGATATGACTAAACCTCTAAAAGAAAAACACG
AATATTGGTGGGTGTACTTGATCAATAAGAAGAATAATCAATTAGTCACA
GCTCCACAGCAAGTCACCAATCTCAAAGTTACTGAAAAGAATGTGGTCGA
AAGAGACGATGGGGCGGATGATGAATGGTCCAGTATAAAAGATGATATGA
TGCAACCTGATCGTCTCTTAGATGCCAAATCCAAAGAAAGTCATATCGTT
CATTGTCCTTACTATCCAATGGTGGCAGTATCAGAAGCGAAAGATTTCGA
TCCTGGAGAGCATTGGAATTATTCGAGTGAAGATGACGATAAAGATGATT
CCGGTGAAAGCGTTTACGAAACTGAAGAAGAAGATGATGATGACGATGAG
GATTAAGTGCAATTGAAATTCTCAGCACCAGAGAAACCAGGCATTTATCA
ATACATTGTGGTGGTCAAGTCAGATTCTTATGTTGATTTCGATATGACTA
AACCTCTAAAAGAAAAACACGAATATTGGTGGGTGTACTTGATCAATAAG
AAGAATAATCAATTAGTCACAGCTCCACAGCAAGTCACCAATCTCAAAGT
TACTGAAAAGAATGTGGTCGAAAGAGACGATGGGGCGGATGATGAATGGT
CCAGTATAAAAGATGATATGATGCAACCTGATCGTCTCTTAGATGCCAAA
TCCAAAGAAAGTCATATCGTTCATTGTCCTTACTATCCAATGGTGGCAGT
ATCAGAAGCGAAAGATTTCGATCCTGGAGAGCATTGGAATTATTCGAGTG
AAGATGACGATAAAGATGATTCCGGTGAAAGCGTTTACGAAACTGAAGAA
GAAGATGATGATGACGATGAGGATTAAGTGCAATTGAAATTCTCAGCACC
AGAGAAACCAGGCATTTATCAATACATTGTGGTGGTCAAGTCAGATTCTT
ATGTTGATTTCGATATGACTAAACCTCTAAAAGAAAAACACGAATATTGG
TGGGTGTACTTGATCAATAAGAAGAATAATCAATTAGTCACAGCTCCACA
GCAAGTCACCAATCTCAAAGTTACTGAAAAGAATGTGGTCGAAAGAGACG
ATGGGGCGGATGATGAATGGTCCAGTATAAAAGATGATATGATGCAACCT
GATCGTCTCTTAGATGCCAAATCCAAAGAAAGTCATATCGTTCATTGTCC
TTACTATCCAATGGTGGCAGTATCAGAAGCGAAAGATTTCGATCCTGGAG
AGCATTGGAATTATTCGAGTGAAGATGACGATAAAGATGATTCCGGTGAA
AGCGTTTACGAAACTGAAGAAGAAGATGATGATGACGATGAGGATTAAGT
GCAATTGAAATTCTCAGCACCAGAGAAACCAGGCATTTATCAATACATTG
TGGTGGTCAAGTCAGATTCTTATGTTGATTTCGATATGACTAAACCTCTA
AAAGAAAAACACGAATATTGGTGGGTGTACTTGATCAATAAGAAGAATAA
TCAATTAGTCACAGCTCCACAGCAAGTCACCAATCTCAAAGTTACTGAAA
AGAATGTGGTCGAAAGAGACGATGGGGCGGATGATGAATGGTCCAGTATA
AAAGATGATATGATGCAACCTGATCGTCTCTTAGATGCCAAATCCAAAGA
AAGTCATATCGTTCATTGTCCTTACTATCCAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025283XLOC_025283Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041294-exon-sc0002789-1575043694:11364..11497TCONS_00041294-exon-sc0002789-1575043694:11364..11497Clytia hemisphaericaexon
TCONS_00041294-exon-sc0002789-1575043694:10682..10780TCONS_00041294-exon-sc0002789-1575043694:10682..10780Clytia hemisphaericaexon
TCONS_00041294-exon-sc0002789-1575043694:10269..10373TCONS_00041294-exon-sc0002789-1575043694:10269..10373Clytia hemisphaericaexon
TCONS_00041294-exon-sc0002789-1575043694:9034..9586TCONS_00041294-exon-sc0002789-1575043694:9034..9586Clytia hemisphaericaexon
TCONS_00041294-exon-sc0002789-1510915933:11364..11497TCONS_00041294-exon-sc0002789-1510915933:11364..11497Clytia hemisphaericaexon
TCONS_00041294-exon-sc0002789-1510915933:10682..10780TCONS_00041294-exon-sc0002789-1510915933:10682..10780Clytia hemisphaericaexon
TCONS_00041294-exon-sc0002789-1510915933:10269..10373TCONS_00041294-exon-sc0002789-1510915933:10269..10373Clytia hemisphaericaexon
TCONS_00041294-exon-sc0002789-1510915933:9034..9586TCONS_00041294-exon-sc0002789-1510915933:9034..9586Clytia hemisphaericaexon
TCONS_00041294-exon-sc0002789-1491911889:11364..11497TCONS_00041294-exon-sc0002789-1491911889:11364..11497Clytia hemisphaericaexon
TCONS_00041294-exon-sc0002789-1491911889:10682..10780TCONS_00041294-exon-sc0002789-1491911889:10682..10780Clytia hemisphaericaexon
TCONS_00041294-exon-sc0002789-1491911889:10269..10373TCONS_00041294-exon-sc0002789-1491911889:10269..10373Clytia hemisphaericaexon
TCONS_00041294-exon-sc0002789-1491911889:9034..9586TCONS_00041294-exon-sc0002789-1491911889:9034..9586Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041294-proteinTCONS_00041294-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002789supercontigsc0002789:9034..11497 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.3969	27.3869	9.6994	13.0274	38.068	26.7131	57.7008	60.2183	32.2556	37.9956	26.6566	26.2749	26.8955	22.373	20.384	21.7549	14.012	15.1007	4.91786	7.68908	11.462	10.3721	17.1293	15.3061	30.7598	32.9455	24.8346	23.5491	12.5349	13.192
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004179Sec63-dom
IPR000008C2_dom
IPR014756Ig_E-set
Blast
[Close]
BLAST of TCONS_00041294 vs. Swiss-Prot (Human)
Match: SEC63 (Translocation protein SEC63 homolog OS=Homo sapiens GN=SEC63 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.212e-26
Identity = 55/116 (47.41%), Postives = 78/116 (67.24%), Query Frame = 3 
Query:   15 RDDGADDEWSSIKDDMMQPDR-LLDAKSKESHIVHCPYYPMEKHEYWWVYLINKKNNQLVTAPQQVTNLKVTEKVQLKFSAPEKPGIYQYIVVVKSDSYVDFDMTKPLKVAVSEAK 359
            +DD A  EW  ++  + + +R LL+ KSK +H V+  Y+P EK E+WW+Y+ ++K   L++ P  V  LK TE+V+LKF AP KPG YQY V ++SDSY+  D  KPLK+ V EAK
Sbjct:  607 KDDEA--EWQELQQSIQRKERALLETKSKITHPVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVCTLKDTEEVELKFPAPGKPGNYQYTVFLRSDSYMGLDQIKPLKLEVHEAK 720
The following BLAST results are available for this feature:
BLAST of TCONS_00041294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEC633.212e-2647.41Translocation protein SEC63 homolog OS=Homo sapien... [more]
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