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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041293 ID=TCONS_00041293|Name=TCONS_00041293|organism=Clytia hemisphaerica|type=transcript|length=1218bp
gattttggctgtttttagctgggattttacggattttcagaaTTTCCCTC
AAATTTTGCTTGATGTGATATAAGCATCCTTATAAGTATTTTTCAGTCTT
GTCAAGTCATCGATCTAAGCATCTTCGAGCctgttttcgaatttttgtat
gcttaagcgaggccaatttaattgaTAATCTTAtggttaaaatgaaaaat
tgaacataaaattcttaaagccttggaaaaactagcaaaattttgaaaat
ttgggagTCAGTGAAGCAATGCAAATAAAAATATACTATCAAGATGAATt
agatttttatttcgatttttggaatttcagggttgGTCGGGCTTGTAAAA
CAATTAATCAAACTGGTCTCGCcttatttatttaaaaacttcAGATGAGA
AACTTATGtgtttatttcgattttttaaacTGAATTTAACTGAATCATTT
TGGTTGGATAGGAAAAACACGAATATTGGTGGGTGTACTTGATCAATAAG
AAGAATAATCAATTAGTCACAGCTCCACAGCAAGTCACCAATCTCAAAGT
TACTGAAAAGGTGCAATTGAAATTCTCAGCACCAGAGAAACCAGGCATTT
ATCAATACATTGTGGTGGTCAAGTCAGATTCTTATGTTGATTTCGATATG
ACTAAACCTCTAAAAGTGGCAGTATCAGAAGCGAAAGATTTCGATCCTGG
AGAGCATTGGAATTATTCGAGTGAAGATGACGATAAAGATGATTCCGGTG
AAAGCGTTTACgaaactgaagaagaagatgatgatgacgatgagGATTAA
TCACGCCCTCGTGGTGGAACGCCCGTCAAACAACCGCCCGAAGAGTCAAA
AGTGTCAAGGGTGTCCGAACTTCAGATCATGGTCTCTCAGACAGATCTTT
TTAGACTTGTCCAGGGAATACTCgttccaaaaaaacttttcggaAAAGGT
TACCAcatgtttgatttttaaaacaaatttcagACAATTCTAGCTTCTCT
TTTATATTGACCACGCCCAAGGGTTTTTAGTACTTTACTTTCGCACCTCT
TAAGCTAAAGTGCCGCTCGTATATTTCCCTCTTTTTAATTATTCAGTACT
GAatacaaataataaaaataagggaaggttttttatcaatattagaaatt
attattattataagaaATATGTATCGGTAGGTTTATTTTATATCTAGAAA
TATTTCTGTTGAATTACA Run BLAST on NCBI transcript from alignment at sc0002789:9034..11241- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041293 ID=TCONS_00041293|Name=TCONS_00041293|organism=Clytia hemisphaerica|type=transcript|length=2208bp|location=Sequence derived from alignment at sc0002789:9034..11241- (Clytia hemisphaerica)
GATTTTGGCTGTTTTTAGCTGGGATTTTACGGATTTTCAGAATTTCCCTC
AAATTTTGCTTGATGTGATATAAGCATCCTTATAAGTATTTTTCAGTCTT
GTCAAGTCATCGATCTAAGCATCTTCGAGCCTGTTTTCGAATTTTTGTAT
GCTTAAGCGAGGCCAATTTAATTGATAATCTTATGGTTAAAATGAAAAAT
TGAACATAAAATTCTTAAAGCCTTGGAAAAACTAGCAAAATTTTGAAAAT
TTGGGAGTCAGTGAAGCAATGCAAATAAAAATATACTATCAAGATGAATT
AGATTTTTATTTCGATTTTTGGAATTTCAGGGTTGGTCGGGCTTGTAAAA
CAATTAATCAAACTGGTCTCGCCTTATTTATTTAAAAACTTCAGATGAGA
AACTTATGTGTTTATTTCGATTTTTTAAACTGAATTTAACTGAATCATTT
TGGTTGGATAGGAAAAACACGAATATTGGTGGGTGTACTTGATCAATAAG
AAGAATAATCAATTAGTCACAGCTCCACAGCAAGTCACCAATCTCAAAGT
TACTGAAAAGGTTTGTCTACACTTGCAATACTAAGTGCTTAACTTTTTTA
GTTCGATTGTTTTCCAAACCCGTTTATTAAATATTTTCATCAGTCAAGAG
AAGATCTATAGTTACCTTATGTTTGGGGTACTTTGGATTTCCTACCCCCT
CAACTCCGAACCTCCCGGGAAGTAGTTAGCACTGGCCTTAAAATACATTA
TTTAAAGTATCTCCCAAAAGCAAGGACATGCTAAACGTTGATTTGGTGAC
TTAGATTTTAAAACTTTGACTACTTTTGACTACCCACTGACCAGAGCTCT
CTTTCTCACTCTTCCTAGGTGCAATTGAAATTCTCAGCACCAGAGAAACC
AGGCATTTATCAATACATTGTGGTGGTCAAGTCAGATTCTTATGTTGATT
TCGATATGACTAAACCTCTAAAAGTAAGTACTGTTGAGTCTCTTTAATTT
GACTCTCTATTATAACTGGAATGTCTCCTTAACTCAAACAAGTTTTCTCA
TCCCTTCGGATAACAACATGACTGCATAATTCCATCAAAAATTTGCGTTC
CCCGTGCTTGTTCGAGTTATGGAGACACCACTTTAGCTCGTTTCTCAAAT
TTCTTATGTGATTTGGTAATAAATGCGTTCAACACGAAGACTAATGATGA
ACTAATATTTTTAACATTTGAATATGGTATACGTGCATCGCGTGTATAAT
ACATCTTACAAGTGTTTTGTGCATCTATTTTTATATAATCAAGCCCCCTT
CATCATTTTTTAAGATGTCTTTGAAATGACTGTTGCTCTTGTCACTAGGC
TTGTTTTAAAAATGATTTCTTCTACGGACGCTGTTTGGATTGGAACGGGA
CAACGTAGAAATTATTCTATTCACGATATGTACCATTGCAATGTTTTCTG
ATATTACATCACAGACCCAATAGCTGATTGGTTGTAAGTGACGTAGAATC
AGTCAATACGTCACTTTCAACCAGTCAGATGTTTCGTCCGTGAAGACATT
GCAATGGTGCATATCATGAATATACATTTTGTTCCTTTGCAATTTCCTCA
AATAATCCTCAATCATGTCCTGCAAATTGATATGGTGTTTTTCTGTTATT
CCCAGGTGGCAGTATCAGAAGCGAAAGATTTCGATCCTGGAGAGCATTGG
AATTATTCGAGTGAAGATGACGATAAAGATGATTCCGGTGAAAGCGTTTA
CGAAACTGAAGAAGAAGATGATGATGACGATGAGGATTAATCACGCCCTC
GTGGTGGAACGCCCGTCAAACAACCGCCCGAAGAGTCAAAAGTGTCAAGG
GTGTCCGAACTTCAGATCATGGTCTCTCAGACAGATCTTTTTAGACTTGT
CCAGGGAATACTCGTTCCAAAAAAACTTTTCGGAAAAGGTTACCACATGT
TTGATTTTTAAAACAAATTTCAGACAATTCTAGCTTCTCTTTTATATTGA
CCACGCCCAAGGGTTTTTAGTACTTTACTTTCGCACCTCTTAAGCTAAAG
TGCCGCTCGTATATTTCCCTCTTTTTAATTATTCAGTACTGAATACAAAT
AATAAAAATAAGGGAAGGTTTTTTATCAATATTAGAAATTATTATTATTA
TAAGAAATATGTATCGGTAGGTTTATTTTATATCTAGAAATATTTCTGTT
GAATTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041293-exon-sc0002789-1575043694:10682..11241 | TCONS_00041293-exon-sc0002789-1575043694:10682..11241 | Clytia hemisphaerica | exon |
| TCONS_00041293-exon-sc0002789-1575043694:10269..10373 | TCONS_00041293-exon-sc0002789-1575043694:10269..10373 | Clytia hemisphaerica | exon |
| TCONS_00041293-exon-sc0002789-1575043694:9034..9586 | TCONS_00041293-exon-sc0002789-1575043694:9034..9586 | Clytia hemisphaerica | exon |
| TCONS_00041293-exon-sc0002789-1510915933:10682..11241 | TCONS_00041293-exon-sc0002789-1510915933:10682..11241 | Clytia hemisphaerica | exon |
| TCONS_00041293-exon-sc0002789-1510915933:10269..10373 | TCONS_00041293-exon-sc0002789-1510915933:10269..10373 | Clytia hemisphaerica | exon |
| TCONS_00041293-exon-sc0002789-1510915933:9034..9586 | TCONS_00041293-exon-sc0002789-1510915933:9034..9586 | Clytia hemisphaerica | exon |
| TCONS_00041293-exon-sc0002789-1491911889:10682..11241 | TCONS_00041293-exon-sc0002789-1491911889:10682..11241 | Clytia hemisphaerica | exon |
| TCONS_00041293-exon-sc0002789-1491911889:10269..10373 | TCONS_00041293-exon-sc0002789-1491911889:10269..10373 | Clytia hemisphaerica | exon |
| TCONS_00041293-exon-sc0002789-1491911889:9034..9586 | TCONS_00041293-exon-sc0002789-1491911889:9034..9586 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002789 | supercontig | sc0002789:9034..11241 - |
Blast
BLAST of TCONS_00041293 vs. Swiss-Prot (Human)
Match: SEC63 (Translocation protein SEC63 homolog OS=Homo sapiens GN=SEC63 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 1.355e-18 Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 3
Query: 462 EKHEYWWVYLINKKNNQLVTAPQQVTNLKVTEKVQLKFSAPEKPGIYQYIVVVKSDSYVDFDMTKPLKVAVSEAK 686
EK E+WW+Y+ ++K L++ P V LK TE+V+LKF AP KPG YQY V ++SDSY+ D KPLK+ V EAK
Sbjct: 646 EKQEWWWLYIADRKEQTLISMPYHVCTLKDTEEVELKFPAPGKPGNYQYTVFLRSDSYMGLDQIKPLKLEVHEAK 720
The following BLAST results are available for this feature:
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