TCONS_00041280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041280
Unique NameTCONS_00041280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length993

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041280 ID=TCONS_00041280|Name=TCONS_00041280|organism=Clytia hemisphaerica|type=transcript|length=993bp
CAAGAAGATCAGGGTGAAGACGATGATGATCAGGCAGGCGTTGTTACTGG
TGTTCTCTTTGGAATAATCATTTTCATTCTCTTGGTTTTGTTAATCATAT
GCTGCTTGCACAAAAAcaAGAAAATTGATGCAAGTATCATGGTCAATGAA
ATACCTGTTAAAAAAGCTCATGAAACGAACGCCAATATGGAATACTTCGG
AAAGGGAGTTGAAAAGCAACCTAATCATTACCACAATCCAGTTTACTTTT
TCAGTGATCCACCGAGGAATTTGAGCCTTGTACAAAATGCGGACAATAat
attttcgggaaaaaaaCAAGCACCGTTATTGAGAATGAGCATTACTATGA
AGATGGAGTTGAAAAGCAACCTAATCATTACCACAATCCAGTTTACTTTT
TCAGTGATCCACCGAGGAATTTGAGCCTTGTACAAAATGCGGACAATAat
attttcgggaaaaaaaCAAGCACCGTTATTGAGAATGAGCATTACTATGA
AGATCCTGACAAATATCGAAAAGACGGACCACGAATTGTAGATATTACAG
AACCCCCTCCGACACCCACAAATCCATCATCACCAGGAAATGAATTGACA
GTACCAGGGCTTGGAGGTCTGAGTATTGAAGAAGACATTTACGCAACGCC
AAATAAAAGCCCTGCTCTTCCCTTAAAGGTTGGGTTGAACGCTTAATTTG
TCTCTGTTTCATGTACGCCAGTACTTGTTTCGATTATTATTTTTACCTCA
GTTTTGTTTTGCCAGTTTTACCAAGTGACCGTGAAGAAGTTTTCAGTATT
CGTTGTTTATTGAGAATTGGAAATAACAATTTTCGTATGGTTTTCGAATC
TTACCGTGAGGTACATGATAATTTTCTAATGTACACGGTAAATCTATGCA
GGCGCTTGAAAATTCATTGTCTGTAAGGATAATAAGTCAATTATATCAAT
AACTTCTTGTGGAAACAAGATAAAATAGACCTTTCCAATgaac
Run BLAST on NCBI

transcript from alignment at sc0002784:777..5746+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041280 ID=TCONS_00041280|Name=TCONS_00041280|organism=Clytia hemisphaerica|type=transcript|length=4970bp|location=Sequence derived from alignment at sc0002784:777..5746+ (Clytia hemisphaerica)
CAAGAAGATCAGGGTGAAGACGATGATGATCAGGCAGGCGTTGTTACTGG
TGTTCTCTTTGGAATAATCATTTTCATTCTCTTGGTTTTGTTAATCATAT
GCTGCTTGCACAAAAAGTAAGTTTGCTATTCGATACCGTACTAACCTACA
ACAATCCAAAAGGTCCCTCAATCAAATCGATCTGATTGGtcttaatttca
aaattatggTGTAATTGAGCTAAATAAACCAATCAATGCTCAGAAAAAGT
GTTTGATTATTGATGGACTTTTGGATTACTATAGGTAAGTACGGTATTTC
AAGTATACTTTCGGGGTGGGGGCATGGGTGTGGGATATTATTCGGGACAC
TAGAGAAAGATAAGAGAAATGAAGAAACCTTTAGGTATAAAAGAGGTACC
GTTACCTATCGCAAATACTTGGTATCAAGTTTTACCTAAGCACCCTTGTA
TGGGAATTATTTTCACTGGTTTGATTTCCTACCGGATATGAGAGAAAGGG
GATTCTTCCGgtaaattataaaaaagctCAATTATTCTTGCCTTCTTact
cttttttattcttttagcaAGAAAATTGATGCAAGTATCATGGTCAATGA
AATACCTGTTAAAAAAGCTCATGAAACGAACGCCAATATGGAATACTTCG
GAAAGGTAAGTTTTTGAGTTTCTGTTTTTTCCAGTTTGGTATGAAACATT
GCGGAAAGGGTTCTTTAGAGGAAGATATGATCGAATAGCCCCAGTGAAAA
CTTTTTCCCATAGCTGGGAATGAAAGCttctatcaaaatcccaatgggaa
caGAAATTTTATTGTGTCCTGCTCAAAGAATCCACTGGGGATAACTTTTA
CCCTAAATCTTAAATGGGGATGAAACCGGGGGGGGGGGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNgcccgggggggtactaggtttgcga
ggtgacgggtatgtccgagccgaaaatcgaaaatcgaccctttgagagac
aaaatgttggtgattttgggaccctttgagagactttttcctaaattttg
gtccattttttccaaattttggtttgattttcaccaaattttggttaaaa
ttcttggaaatcgtgaccctttaagagagaaatttttgatttttgtgatt
ttgggaccctttcagagactaacttttgaatatGTACccttttgagagac
ttttgaggaatgagaaaaggtacccttatggctcgcacatacccggcacc
cattttgcctaagcaccccccccccgggggatgaaatcaaagtcaacttt
caaaaattggcTGACGACATAATAGTAGCAAAAAGTTACTTGATAAAGCA
TGCCCACCACAAAATAGATTATGAAAATATTAGTAGGAAAGTGACCCGGA
GATAATTCTTGAGTCAGTAGGGGGTAAAATTAAAAGCTGAATAGCTATGG
AGAATTTCGATGTTACCTTTAAATGGGTATAAGAGTTCAGTGTAGCTTTC
CATTAGgcattttaaggtatttttctcaCAAGGGACGCAAATAGATTtga
ttttccattgttttgttaTACATGGGTGTATTCTCATTTATTTTGACTTC
AGGGAGTTGAAAAGCAACCTAATCATTACCACAATCCAGTTTACTTTTTC
AGtaagattgttttatttttccccATACTGTTTCTCCATTAcatttctta
gtgagttccccACCTAACTACGTTAAAAAGGCCAGTACACGCTAACTATA
CACGCTAACTATACCGGCtaagttcaatttttttatctctttGTCAGACC
AATTTAGTACCTCCTTTATTTATGGTCTTAACATactgattgtttttatt
ttatgatttctaGGTGATCCACCGAGGAATTTGAGCCTTGTACAAAATGC
GGACAATAatattttcgggaaaaaaaCAAGCACCGTTATTGAGAATGAGC
ATTACTATGAAGATGTAAGTATTTTATGACCGAAAATTGTTGAGAATTGA
GAAACGAGTGCAGTCTACACACGTTATGTATGCGAATATATGATGGTATA
AAAATGAGGATGAATTTCagccaaaacctaagaaaaaACCTCAGATTTAA
AAAGAACTTCTTACTTCATACCCGATTTAAAGGGGTTTGTaagggttcga
aataccgttttccctttttggctgaatcccggaatcccaaaaattgaaaa
aaaataacaccGTCACGCCGGTTTGTAGAGGTATACTGGAATATAGGCTG
GAGTCGTATATATTGCGTGTAGTATAGGCGTtttatgataatacgattat
tgttacgggatttagttcgtataaacgactggaagaaaccggtgttccgg
ccttatagatacccggctagctacgcagaaacttgggtagcgagaaaaca
atttatcaagcaacaacaaactctcaaaacaaaatcaagtcaaataaaaa
acttttaacacacaaatccaccaacattttttttcgagaaTTTTCTTTCA
GCGGGAAAAAGTTATAATTGCACCGTGAGTGACCCGGAGATAATTCTTGA
GTCAGTAGGGGGTAAAATTAAAAGCTGAATAGCTATGGAGAATTTCAATG
TTACCTTTAAATGGGTAAAAGATTTCAGTGTAGCTTTCCATTAGgcattt
taaggtatttttctcaCAAGGGACGCAAATAGATTtgattttctattgtt
ttgttaTACATGGGTGTATTCTCATTTATTTTGACTTCAGGGAGTTGAAA
AGCAACCTAATCATTACCACAATCCAGTTTACTTTTTCAGtaagattgtt
ttatttttccccATACTGTTTCTCCATTAcatttcttagtgagttccccA
CCTAACTACGTTAAAAAGGCCAGTAcacgccaatttttttatctctttGT
CAGACCAATTTAGTACCTCCTTTATTTATGGTCTTAACATactgattgtt
tttattttatgatttctaGGTGATCCACCGAGGAATTTGAGCCTTGTACA
AAATGCGGACAATAatattttcgggaaaaaaaCAAGCACCGTTATTGAGA
ATGAGCATTACTATGAAGATGTAAGTATTTTATGACCGAAAATTGTTGAG
AATTGAGAAACGAGTGCAGTCTACACACGTTATGTATGCGAATATATGAT
GGTATAAAAATGAGGATGAATTTCagccaaaacctaagaaaaaACCTCAG
ATTTAAAAAGAACTTCTTACTTCATACCCGATTTAAAGGGGTTTGTaagg
gttcgaaataccgttttccctttttggctgaatcccggaatcccaaaaat
tgaaaaaaaataacaccGTCACGCCGGTTTGTAGAGGCATACTGAAATAT
AGGCTGGAGTCGTATATATTGCGTGTAGTATAGGCGTTTTAtgatgataa
tacgattattgttacgggatttagttcgtataaacgactggaagaaaccg
gtgttccggccttatagataccctggctagctacgcagaaacttgggtag
cgagaaaacaatttatcaagcaacaacaaactctcaaaacaaaatcaagt
caaataaaaaacttttaacacacaaatccaccaacattttttttcgagaa
TTTTCTTTCAGCGGGAAAAAGTTATAATTGCAagattgacacttttcttt
gtttgaagttagtgcacaaaggtttttAGACTGCTGAAATTTTTCCCTCT
ATTACTTTTTGccttatttctactatgtcggGATTAGTcgtctacaatca
gtgacaaaatacatggcacaaaagggaaatccggtgaaagtttgaaacca
caatcgatttgtaagtgctctaaagtaggttcgaaagTTAGAGtcttaac
tctgagttttaacgctagacttaagacttaagaccttacGATCTGAggtc
caaaagttcaaaaatgatcCAGTAGGgattgaaatatagcctagaaacta
ataaatccctcccagatcgaaataattgataaaattaAGATGAAGACCTG
agattgacattctcgctcgaacttcaattttcaaaaaaatggtgaaTTAG
CCAAAAGtaccaatatgttatggcactgattgtagccTGCTAGACTAACT
GGAATACGGACAAAAGTAAGGCTAATCACCTTCACCGTGTGATTTTAAAA
TACAGTTTTCCTAAATCAGTTCATTTATAACAGTTCTTTAAAGCTCAGTT
GATTAGCAAGATTACAGCCTACAACATAATACATATTTCAAACAAAGCCC
AGGGTGTGATACGGGAGTTGAATCCCCAGCTAAGGGCGAATATCCCTTTC
TAACATAATGCACTAAATCCAAACCGAAAAAGTTGCCCATTCGAGTCAAC
TCTAGATTAACTATTCTTATTTCCTTTTTAGCCTGACAAATATCGAAAAG
ACGGACCACGAATTGTAGATATTACAGAACCCCCTCCGACACCCACAAAT
CCATCATCACCAGGAAATGAATTGACAGTACCAGGGCTTGGAGGTCTGAG
TATTGAAGAAGACATTTACGCAACGCCAAATAAAAGCCCTGCTCTTCCCT
TAAAGGTTGGGTTGAACGCTTAATTTGTCTCTGTTTCATGTACGCCAGTA
CTTGTTTCGATTATTATTTTTACCTCAGTTTTGTTTTGCCAGTTTTACCA
AGTGACCGTGAAGAAGTTTTCAGTATTCGTTGTTTATTGAGAATTGGAAA
TAACAATTTTCGTATGGTTTTCGAATCTTACCGTGAGGTACATGATAATT
TTCTAATGTACACGGTAAATCTATGCAGGCGCTTGAAAATTCATTGTCTG
TAAGGATAATAAGTCAATTATATCAATAACTTCTTGTGGAAACAAGATAA
AATAGACCTTTCCAATgaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025274XLOC_025274Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041280-exon-sc0002784-1491911889:777..892TCONS_00041280-exon-sc0002784-1491911889:777..892Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1510915933:777..892TCONS_00041280-exon-sc0002784-1510915933:777..892Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1575043694:777..892TCONS_00041280-exon-sc0002784-1575043694:777..892Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1491911889:1344..1431TCONS_00041280-exon-sc0002784-1491911889:1344..1431Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1510915933:1344..1431TCONS_00041280-exon-sc0002784-1510915933:1344..1431Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1575043694:1344..1431TCONS_00041280-exon-sc0002784-1575043694:1344..1431Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1491911889:2479..2527TCONS_00041280-exon-sc0002784-1491911889:2479..2527Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1510915933:2479..2527TCONS_00041280-exon-sc0002784-1510915933:2479..2527Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1575043694:2479..2527TCONS_00041280-exon-sc0002784-1575043694:2479..2527Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1491911889:2740..2840TCONS_00041280-exon-sc0002784-1491911889:2740..2840Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1510915933:2740..2840TCONS_00041280-exon-sc0002784-1510915933:2740..2840Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1575043694:2740..2840TCONS_00041280-exon-sc0002784-1575043694:2740..2840Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1491911889:3617..3665TCONS_00041280-exon-sc0002784-1491911889:3617..3665Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1510915933:3617..3665TCONS_00041280-exon-sc0002784-1510915933:3617..3665Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1575043694:3617..3665TCONS_00041280-exon-sc0002784-1575043694:3617..3665Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1491911889:3846..3946TCONS_00041280-exon-sc0002784-1491911889:3846..3946Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1510915933:3846..3946TCONS_00041280-exon-sc0002784-1510915933:3846..3946Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1575043694:3846..3946TCONS_00041280-exon-sc0002784-1575043694:3846..3946Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1491911889:5258..5746TCONS_00041280-exon-sc0002784-1491911889:5258..5746Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1510915933:5258..5746TCONS_00041280-exon-sc0002784-1510915933:5258..5746Clytia hemisphaericaexon
TCONS_00041280-exon-sc0002784-1575043694:5258..5746TCONS_00041280-exon-sc0002784-1575043694:5258..5746Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002784supercontigsc0002784:777..5746 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.890809	0.325332	0	0	0	0	0.555909	0.593848	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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