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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041275 ID=TCONS_00041275|Name=TCONS_00041275|organism=Clytia hemisphaerica|type=transcript|length=2405bp
tagACTGCAAAGGAAGGTGTTAATCAACCAGtgTTTATTGGCGCAGATTC
CCAGAAATTCCCTGAGCAAAAAATCAACGAAGCTCAAGGAAAACAAGCAC
CAATTGGAAATAACCATTTGAACGGTGGAATGCCTGAAGCATATATGTCT
GCAAGTGGTTATTACGCTAACAACACTGGCTTTCCAGCCATGTCTTTCCC
AAATTTTACGCAACCAGCTCAGTGGTCAACTGCTACAAACAATGCACCTC
CACCAAATACTCAAAACTTTGATCATTCTGCTGCCGCAGCAATGCCCTAT
AGCACTATGAACGCTGCACCTAACCCCTCTGCAAATGGGGATGCTCCTCC
GCAAAACCCTCAGTATGTTACTGCAGATCATTTGTTTAACCAGAACAATT
CTACCTATCAAAATGCTTTTTCTGCTGCACCATTCATGAATGGAAGCTGG
TCGTACTTTAACAACCCTAGCtcttatttttttccaaccGGAAATGGTGA
TTTGAACTTGAATTGGGGTACTGCTGCTCCAACAGATAATCCAAATAATG
CTTTGTTTCAAGATCTTTACAAGCCACCTCCGGCACCTGCAGAAGTAGAA
AAGCCTAAGAACGAGGCTGCTCCACCAACTGAACTGTCGTCAAGTTTTGA
GAAGAGTGAAATTAAGCCTCCTGTTTCTGCTGTTTCAGTAGAGCAGGTTG
AACAATCTTTGTCTTCAATGACTGTAAACCCTCCTGAAAAGGAAGTTGAA
AATAACCTTGAAACTCCCGTTGTTGCTCCAACACCTGCTAGTCTGCCTCC
AAGTAGCACTGCCGTTAGTGCACCTGTGAAACATGTTAGCTCAGCTCCTG
CTCCACCTTCTAAACCTACCGGACACTCCAATGCACCAGCCAAGCCCATG
TCGTGGGCATCTGTTGCAAGTAAACCTGCTTCGAGTAAACCTCCACCGAA
GAAGGTTCCACCTAAGACTGTCGCACCAGTCACAAATAGTAAACCAAGTT
ATTCTACGCAACTAGGAACTGCCAATAATAACAAAGGAAAGCAACAACAA
CCTTCTGGAGGACGTTGGTCTCGCCAAAACCAGGGAAACCAGAACAGTAG
TAATGCTGGAATTGATAATACTGTTGCTGTGCCTAATGATAGTCATTTAG
ACATTAACCGAATGAAGGATAACTCGCCATTGTTGAAGAAATTGATGCAT
AAGTATAATTTTAATCCGAGAGATTTGGCTATTGATATGAAGAACGCAAG
GTTTTTTATTATTAAGAGTTATAGTGAGGATGATATTTTCCGTTCAATTA
AGTATTCTAGTTGGACATCTACCGAGCATGGAAACCGTCGCTTGAATGAT
GCATTCACTGCCCAAGAGAAAACCGGTGTCAAGACACCAATTTATCTTTT
GTTCAGTGTTAATAGCAGTGGACATTTTTGCGGTGTGGCCGAAATGAAAT
CCAATGTCGACTTTGATGTCGAGACTGGAATTTTTGTTCAAGATAAATGG
AAGGGACGTTTTGATGTTCGTTGGATTTATGTGAAGGATGTGCCCAACAA
TACATTACGTCACATCCGTTTGGAAAATAATGAGAACAAACCAGTGACCA
ATTCTCGTGACACTCAGGAGGTCCATCCTGACAAGGCGAAACAAGTATTG
AAAATTATTCATAATTACAAGGCGCAAACCTCAATCTTTGATGATTTCTC
TCATTACGAGAAGAGACAAGAAGAAGATGCCAAATTGAGAagcAAAAAGA
TGCCAGAACCAAATctttaaattgttttgtttcattggaaaatttttcac
cTCAATTATACAATGGTCATCTCAAAAGGAGTGTTGTTTTTGATTTATTG
GGTAAttataaaattattataaaacaaCAATCAAGTCTATTGTAATTTGA
ATAATATGTTGTATGAATAAGCATAATGAAAATGAATCGCTTACTAGGGG
ACAGCATCATCATTCACAAAACTTTCCCCTTTTTGTGTTCAGTTTTGTTG
TTTACCTTCGTTTTCTCTCCGTCTCCTCGTTTGCGTTGTAGTAAGTTTGT
CATACACTGCATCTCTCATATTTCATACGTTTGAAAAGTGTTCGAAGATC
CCTCTTATCATATCAAAGTACCTGTCCATGCTGTCCCCTCGgtatttgat
aaatttgaattgcttttttatttcttgctAAAACTTTTGTCAACATCGCT
ATATGCTTACGTTATGGGAACATCTCCACCATCCATCAAATGAGTTATGA
AATAATAACAAACTCGTTTGATCCTCAAATGACGAAtaagaaaaagaaca
aaagaacatGTGAAAGTTTTCGTTCTGTCTTTTATCCTTCGACACAGGTT
TTAAGATTTATTCCCTAGTTTACTCTGACGTTTTTTGTAGAACCCATCCC
TTGTG Run BLAST on NCBI transcript from alignment at sc0002782:1897..6323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041275 ID=TCONS_00041275|Name=TCONS_00041275|organism=Clytia hemisphaerica|type=transcript|length=4427bp|location=Sequence derived from alignment at sc0002782:1897..6323+ (Clytia hemisphaerica)
tagACTGCAAAGGAAGGTGTTAATCAACCAGGTAACTTGAAATTAGTTTT
TGATACTAAAATGCTGTCTGGGCTCAAATCACTGCTTGTTCTATTCACAT
CTCTAGATTCTTCATCCATGCATGAATAATAAGAAATTGCATTCATTCCA
GTTGTCtgctcctttgtttttattagaTTATTTTATTGCTGCAATCTACA
TTtcttgtttcaatattttttagtgTTTATTGGCGCAGATTCCCAGAAAT
TCCCTGAGCAAAAAGTAAGTTTACGTTTACTTTCTGGGCAAAGTTGCTCT
ACATTATACTGAAATGTTAACAATGTTGGTCTTAATTTAATGGAACAGAA
TTGCTTTTAGGAAAGAAGTCTTTATATGAATGTTTAATTCTTTATGGAAC
TCTAATTAGTTACTTATGAGGATGCATATGCACACTGTCGACATCAAATG
TTTATAaatctttctaaattttatCATAACATTTTTAGATCAACGAAGCT
CAAGGAAAACAAGCACCAATTNAAATGGTActgtaatttcaattttctca
acGGTCCACataaacaaagaaacaaaagtgaaagtaaaaatGTCTCTCTG
AATTTTATGAGTTAGTAAGCCAACTCAGTATTTCatagttttttattaaa
aaggacTTTCCAAATCAAAAGAGCCATGTTTATgcattttgaattgaatt
gaatatattttcgctacAACGCAGCAGGATAATCCCTTACAAAAAATAGT
AGATtactctaatacaatggggaacctagaagaaactgaaaaattgttac
ataactaaagaaaaaaaaaatgaataaacgattatGCATGctaaaaattt
aagttttacTCAGTTGATAGCCAATAGATTctcatcattttcttttttct
cttttgtagACTGCAAAGGAAGGTGTTAATCAACCAGGTaacttgaaatt
tgtttttgatacTAAAATGCTGTCTGGGCTCAAATCACTGCTTGTTCTAT
TCACATCTCTAGATTCTTCATCCATGCATGTTTAATAAGAAATTGCATTC
ATTCCATTTGTCtgctcctttgtttttattagaTTATTTTATTGCTGCAA
TCTACATTtcttgtttcaatattttttagtgTTTATTGGCGCAGATTCCC
AGAAATTCCCTGAGCAAAAAGTAAGTTTACGTTTTCTTTCTGGGCAAAGT
TGCCCTACATTATACTGAAATGTTAACAATGTTGGTCTTTAATTTAATGG
AACAGAATTGCTTTTAGGAAAGAAGTCTTTATATGAATGCTTAATTCTTT
ATGGAACTCTAATTAGTTACTTATGAGGATGCATATCACACTGTCGACAT
CAAATGTTTATAaatctttctaaattttatCATAACATTTTTAGATCAAC
GAAGCTCAAGGAAAACAAGCACCAATTGGAAATAACCATTTGAACGGTGG
AATGCCTGAAGCATATATGTCTGCAAGTGGTTATTACGCTAACAACACTG
GCTTTCCAGCCATGTCTTTCCCAAATTTTACGCAACCAGCTCAGTGGTCA
ACTGCTACAAACAATGCACCTCCACCAAATACTCAAAACTTTGATCATTC
TGCTGCCGCAGCAATGCCCTATAGCACTATGAACGCTGCACCTAACCCCT
CTGCAAATGGGGATGCTCCTCCGCAAAACCCTCAGTATGTTACTGCAGAT
CATTTGTTTAACCAGAACAATTCTACCTATCAAAATGCTTTTTCTGCTGC
ACCATTCATGAATGGAAGCTGGTCGTACTTTAACAACCCTAGCtcttatt
tttttccaaccGGAAATGGTGATTTGAACTTGAATTGGGGTACTGCTGCT
CCAACAGATAATCCAAATAATGCTTTGTTTCAAGATCTTTACAAGCCACC
TCCGGCACCTGCAGAAGTAGAAAAGCCTAAGAACGAGGCTGCTCCACCAA
CTGAACTGTCGTCAAGTTTTGAGAAGAGTGAAATTAAGCCTCCTGTTTCT
GCTGTTTCAGTAGAGCAGGTTGAACAATCTTTGTCTTCAATGACTGTAAA
CCCTCCTGAAAAGGAAGTTGAAAATAACCTTGAAACTCCCGTTGTTGCTC
CAACACCTGCTAGTCTGCCTCCAAGTAGCACTGCCGTTAGTGCACCTGTG
AAACATGTTAGCTCAGCTCCTGCTCCACCTTCTAAACCTACCGGACACTC
CAATGCACCAGCCAAGCCCATGTCGTGGGCATCTGTTGCAAGTAAACCTG
CTTCGAGTAAACCTCCACCGAAGAAGGTTCCACCTAAGACTGTCGCACCA
GTCACAAATAGTAAACCAAGTTATTCTACGCAACTAGGAACTGCCAATAA
TAACAAAGGAAAGCAACAACAACCTTCTGGAGGACGTTGGTCTCGCCAAA
ACCAGGGAAACCAGAACAGTAGTAATGCTGGAATTGATAATACTGTTGCT
GTGCCTAATGATAGTCATTTAGACATTAACCGAATGAAGGATAACTCGCC
ATTGTTGAAGAAATTGATGCATAAGTATAATTTTAATCCGAGAGATTTGG
CTATTGATATGAAGAACGCAAGGTTTTTTATTATTAAGAGTTATAGTGAG
GATGATATTTTCCGTTCAATTAAGTATTCTAGTTGGACATCTACCGAGCA
TGGAAACCGTCGCTTGAATGATGCATTCACTGCCCAAGAGAAAACCGGTG
TCAAGACACCAATTTATCTTTTGTTCAGTGTTAATAGCAGTGGACATTTT
TGCGGTGTGGCCGAAATGAAATCCAATGTCGACTTTGATGTCGAGACTGG
AATTTTTGTTCAAGATAAATGGAAGGGACGTTTTGATGTTCGTTGGATTT
ATGTGAAGGATGTGCCCAACAATACATTACGTCACATCCGTTTGGAAAAT
AATGAGAACAAACCAGTGACCAATTCTCGTGACACTCAGGAGGTCCATCC
TGACAAGGCGAAACAAGTATTGAAAATTATTCATAATTACAAGGCGCAAA
CCTCAATCTTTGATGATTTCTCTCATTACGAGAAGAGACAAGAAGAAGAT
GCCAAATTGAGAGTAAGTGACAattcttttctttctctttgAGCTTCTGT
AAACCTGCACCCCTTTGATAGATTCTTTCTACGTTgattttcattgtctt
ttactTTGCATAAGGGAAAGTTCTTACAGGTCTTTATTATGTTTAACTCG
TTTTGAACAGGCTAACCTCTTCATTAGTCAGAAAATAACGTGGAATAGTC
AAAGTGAAATCTCCTCTGAAAAAAATCctcttttcaattttgatttgatg
TCCACCACAATTGTTTTAGcccttataaaaaagcattatcgttttttgaa
ttaaattttaacaaatgcCACAAAAAGTGCTGGTTAAAGTTATTTTGGAC
TAATTTTTGTAGCCAATTTTTGTAGCCAATTGCTACCCTTAGGTGCCatc
cgtttattaatttttagctGATAAAAAGGTCTTTCCCGGTCAGCCCTAAC
CAACGCATTAGACAcctaaaagttatgttttagatttttgcagatttggt
cccaaaaatattaaaatgcaTTAACATTTGAATCACAACAAAGCTGCTCG
ATTCCTTCTCCGGCATTCTATACTACCCCACTGAGGTAATCTGGAAAGCC
TTTTAAAGTCCCAAATTAAAGTCAGTCAATCAAATTAGTAATTAAATCTA
ATGGAACTTGCTGGCTCAATAGTAAACAGGGATTGACAAATtaattctct
tttttctttcagagcAAAAAGATGCCAGAACCAAATctttaaattgtttt
gtttcattggaaaatttttcaccTCAATTATACAATGGTCATCTCAAAAG
GAGTGTTGTTTTTGATTTATTGGGTAAttataaaattattataaaacaaC
AATCAAGTCTATTGTAATTTGAATAATATGTTGTATGAATAAGCATAATG
AAAATGAATCGCTTACTAGGGGACAGCATCATCATTCACAAAACTTTCCC
CTTTTTGTGTTCAGTTTTGTTGTTTACCTTCGTTTTCTCTCCGTCTCCTC
GTTTGCGTTGTAGTAAGTTTGTCATACACTGCATCTCTCATATTTCATAC
GTTTGAAAAGTGTTCGAAGATCCCTCTTATCATATCAAAGTACCTGTCCA
TGCTGTCCCCTCGgtatttgataaatttgaattgcttttttatttcttgc
tAAAACTTTTGTCAACATCGCTATATGCTTACGTTATGGGAACATCTCCA
CCATCCATCAAATGAGTTATGAAATAATAACAAACTCGTTTGATCCTCAA
ATGACGAAtaagaaaaagaacaaaagaacatGTGAAAGTTTTCGTTCTGT
CTTTTATCCTTCGACACAGGTTTTAAGATTTATTCCCTAGTTTACTCTGA
CGTTTTTTGTAGAACCCATCCCTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041275-exon-sc0002782-1491911889:1897..1927 | TCONS_00041275-exon-sc0002782-1491911889:1897..1927 | Clytia hemisphaerica | exon |
| TCONS_00041275-exon-sc0002782-1510915933:1897..1927 | TCONS_00041275-exon-sc0002782-1510915933:1897..1927 | Clytia hemisphaerica | exon |
| TCONS_00041275-exon-sc0002782-1575043694:1897..1927 | TCONS_00041275-exon-sc0002782-1575043694:1897..1927 | Clytia hemisphaerica | exon |
| TCONS_00041275-exon-sc0002782-1491911889:3026..3066 | TCONS_00041275-exon-sc0002782-1491911889:3026..3066 | Clytia hemisphaerica | exon |
| TCONS_00041275-exon-sc0002782-1510915933:3026..3066 | TCONS_00041275-exon-sc0002782-1510915933:3026..3066 | Clytia hemisphaerica | exon |
| TCONS_00041275-exon-sc0002782-1575043694:3026..3066 | TCONS_00041275-exon-sc0002782-1575043694:3026..3066 | Clytia hemisphaerica | exon |
| TCONS_00041275-exon-sc0002782-1491911889:3291..4958 | TCONS_00041275-exon-sc0002782-1491911889:3291..4958 | Clytia hemisphaerica | exon |
| TCONS_00041275-exon-sc0002782-1510915933:3291..4958 | TCONS_00041275-exon-sc0002782-1510915933:3291..4958 | Clytia hemisphaerica | exon |
| TCONS_00041275-exon-sc0002782-1575043694:3291..4958 | TCONS_00041275-exon-sc0002782-1575043694:3291..4958 | Clytia hemisphaerica | exon |
| TCONS_00041275-exon-sc0002782-1491911889:5659..6323 | TCONS_00041275-exon-sc0002782-1491911889:5659..6323 | Clytia hemisphaerica | exon |
| TCONS_00041275-exon-sc0002782-1510915933:5659..6323 | TCONS_00041275-exon-sc0002782-1510915933:5659..6323 | Clytia hemisphaerica | exon |
| TCONS_00041275-exon-sc0002782-1575043694:5659..6323 | TCONS_00041275-exon-sc0002782-1575043694:5659..6323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002782 | supercontig | sc0002782:1897..6323 + |
Blast
BLAST of TCONS_00041275 vs. Swiss-Prot (Human)
Match: YTHD2 (YTH domain-containing family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2) HSP 1 Score: 276.174 bits (705), Expect = 6.819e-82 Identity = 129/191 (67.54%), Postives = 155/191 (81.15%), Query Frame = 1
Query: 1177 PLLKKLMHKYNFNPRDLAIDMKNARFFIIKSYSEDDIFRSIKYSSWTSTEHGNRRLNDAFTAQEKTGVKTPIYLLFSVNSSGHFCGVAEMKSNVDFDVETGIFVQDKWKGRFDVRWIYVKDVPNNTLRHIRLENNENKPVTNSRDTQEVHPDKAKQVLKIIHNYKAQTSIFDDFSHYEKRQEEDAKLRSKK 1749
P+L+KL N+NP+D ++K+ R FIIKSYSEDDI RSIKY+ W STEHGN+RL+ A+ + G P+YLLFSVN SGHFCGVAEMKS VD++ G++ QDKWKGRFDVRWI+VKDVPN+ LRHIRLENNENKPVTNSRDTQEV +KAKQVLKII +YK TSIFDDFSHYEKRQEE+ ++ ++
Sbjct: 387 PVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 574
The following BLAST results are available for this feature:
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