TCONS_00041274 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041274
Unique NameTCONS_00041274
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2172

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041274 ID=TCONS_00041274|Name=TCONS_00041274|organism=Clytia hemisphaerica|type=transcript|length=2172bp
ATAGATTctcatcattttcttttttctcttttgtagACTGCAAAGGAAGG
TGTTAATCAACCAGtgTTTATTGGCGCAGATTCCCAGAAATTCCCTGAGC
AAAAAATCAACGAAGCTCAAGGAAAACAAGCACCAATTGGAAATAACCAT
TTGAACGGTGGAATGCCTGAAGCATATATGTCTGCAAGTGGTTATTACGC
TAACAACACTGGCTTTCCAGCCATGTCTTTCCCAAATTTTACGCAACCAG
CTCAGTGGTCAACTGCTACAAACAATGCACCTCCACCAAATACTCAAAAC
TTTGATCATTCTGCTGCCGCAGCAATGCCCTATAGCACTATGAACGCTGC
ACCTAACCCCTCTGCAAATGGGGATGCTCCTCCGCAAAACCCTCAGTATG
TTACTGCAGATCATTTGTTTAACCAGAACAATTCTACCTATCAAAATGCT
TTTTCTGCTGCACCATTCATGAATGGAAGCTGGTCGTACTTTAACAACCC
TAGCtcttatttttttccaaccGGAAATGGTGATTTGAACTTGAATTGGG
GTACTGCTGCTCCAACAGATAATCCAAATAATGCTTTGTTTCAAGATCTT
TACAAGCCACCTCCGGCACCTGCAGAAGTAGAAAAGCCTAAGAACGAGGC
TGCTCCACCAACTGAACTGTCGTCAAGTTTTGAGAAGAGTGAAATTAAGC
CTCCTGTTTCTGCTGTTTCAGTAGAGCAGGTTGAACAATCTTTGTCTTCA
ATGACTGTAAACCCTCCTGAAAAGGAAGTTGAAAATAACCTTGAAACTCC
CGTTGTTGCTCCAACACCTGCTAGTCTGCCTCCAAGTAGCACTGCCGTTA
GTGCACCTGTGAAACATGTTAGCTCAGCTCCTGCTCCACCTTCTAAACCT
ACCGGACACTCCAATGCACCAGCCAAGCCCATGTCGTGGGCATCTGTTGC
AAGTAAACCTGCTTCGAGTAAACCTCCACCGAAGAAGGTTCCACCTAAGA
CTGTCGCACCAGTCACAAATAGTAAACCAAGTTATTCTACGCAACTAGGA
ACTGCCAATAATAACAAAGGAAAGCAACAACAACCTTCTGGAGGACGTTG
GTCTCGCCAAAACCAGGGAAACCAGAACAGTAGTAATGCTGGAATTGATA
ATACTGTTGCTGTGCCTAATGATAGTCATTTAGACATTAACCGAATGAAG
GATAACTCGCCATTGTTGAAGAAATTGATGCATAAGTATAATTTTAATCC
GAGAGATTTGGCTATTGATATGAAGAACGCAAGGTTTTTTATTATTAAGA
GTTATAGTGAGGATGATATTTTCCGTTCAATTAAGTATTCTAGTTGGACA
TCTACCGAGCATGGAAACCGTCGCTTGAATGATGCATTCACTGCCCAAGA
GAAAACCGGTGTCAAGACACCAATTTATCTTTTGTTCAGTGTTAATAGCA
GTGGACATTTTTGCGGTGTGGCCGAAATGAAATCCAATGTCGACTTTGAT
GTCGAGACTGGAATTTTTGTTCAAGATAAATGGAAGGGACGTTTTGATGT
TCGTTGGATTTATGTGAAGGATGTGCCCAACAATACATTACGTCACATCC
GTTTGGAAAATAATGAGAACAAACCAGTGACCAATTCTCGTGACACTCAG
GAGGTCCATCCTGACAAGGCGAAACAAGTATTGAAAATTATTCATAATTA
CAAGGCGCAAACCTCAATCTTTGATGATTTCTCTCATTACGAGAAGAGAC
AAGAAGAAGATGCCAAATTGAGAagcAAAAAGATGCCAGAACCAAATctt
taaattgttttgtttcattggaaaatttttcaccTCAATTATACAATGGT
CATCTCAAAAGGAGTGTTGTTTTTGATTTATTGGGTAAttataaaattat
tataaaacaaCAATCAAGTCTATTGTAATTTGAATAATATGTTGTATGAA
TAAGCATAATGAAAATGAATCGCTTACTAGGGGACAGCATCTCCACCATC
CATCAAATGAGTTATGAAATAATAACAAACTCGTTTGATCCTCAAATGAC
GAAtaagaaaaagaacaaaagaacatGTGAAAGTTTTCGTTCTGTCTTTT
ATCCTTCGACACAGGTTTTAAGATTTATTCCCTAGTTTACTCTGACGTTT
TTTGTAGAACCCATCCCTTGTG
Run BLAST on NCBI

protein sequence of TCONS_00041274-protein

>TCONS_00041274-protein ID=TCONS_00041274-protein|Name=TCONS_00041274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=546bp
MPEAYMSASGYYANNTGFPAMSFPNFTQPAQWSTATNNAPPPNTQNFDHS
AAAAMPYSTMNAAPNPSANGDAPPQNPQYVTADHLFNQNNSTYQNAFSAA
PFMNGSWSYFNNPSSYFFPTGNGDLNLNWGTAAPTDNPNNALFQDLYKPP
PAPAEVEKPKNEAAPPTELSSSFEKSEIKPPVSAVSVEQVEQSLSSMTVN
PPEKEVENNLETPVVAPTPASLPPSSTAVSAPVKHVSSAPAPPSKPTGHS
NAPAKPMSWASVASKPASSKPPPKKVPPKTVAPVTNSKPSYSTQLGTANN
NKGKQQQPSGGRWSRQNQGNQNSSNAGIDNTVAVPNDSHLDINRMKDNSP
LLKKLMHKYNFNPRDLAIDMKNARFFIIKSYSEDDIFRSIKYSSWTSTEH
GNRRLNDAFTAQEKTGVKTPIYLLFSVNSSGHFCGVAEMKSNVDFDVETG
IFVQDKWKGRFDVRWIYVKDVPNNTLRHIRLENNENKPVTNSRDTQEVHP
DKAKQVLKIIHNYKAQTSIFDDFSHYEKRQEEDAKLRSKKMPEPNL
Run BLAST on NCBI

transcript from alignment at sc0002782:1864..6323+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041274 ID=TCONS_00041274|Name=TCONS_00041274|organism=Clytia hemisphaerica|type=transcript|length=4460bp|location=Sequence derived from alignment at sc0002782:1864..6323+ (Clytia hemisphaerica)
ATAGATTctcatcattttcttttttctcttttgtagACTGCAAAGGAAGG
TGTTAATCAACCAGGTAACTTGAAATTAGTTTTTGATACTAAAATGCTGT
CTGGGCTCAAATCACTGCTTGTTCTATTCACATCTCTAGATTCTTCATCC
ATGCATGAATAATAAGAAATTGCATTCATTCCAGTTGTCtgctcctttgt
ttttattagaTTATTTTATTGCTGCAATCTACATTtcttgtttcaatatt
ttttagtgTTTATTGGCGCAGATTCCCAGAAATTCCCTGAGCAAAAAGTA
AGTTTACGTTTACTTTCTGGGCAAAGTTGCTCTACATTATACTGAAATGT
TAACAATGTTGGTCTTAATTTAATGGAACAGAATTGCTTTTAGGAAAGAA
GTCTTTATATGAATGTTTAATTCTTTATGGAACTCTAATTAGTTACTTAT
GAGGATGCATATGCACACTGTCGACATCAAATGTTTATAaatctttctaa
attttatCATAACATTTTTAGATCAACGAAGCTCAAGGAAAACAAGCACC
AATTNAAATGGTActgtaatttcaattttctcaacGGTCCACataaacaa
agaaacaaaagtgaaagtaaaaatGTCTCTCTGAATTTTATGAGTTAGTA
AGCCAACTCAGTATTTCatagttttttattaaaaaggacTTTCCAAATCA
AAAGAGCCATGTTTATgcattttgaattgaattgaatatattttcgctac
AACGCAGCAGGATAATCCCTTACAAAAAATAGTAGATtactctaatacaa
tggggaacctagaagaaactgaaaaattgttacataactaaagaaaaaaa
aaatgaataaacgattatGCATGctaaaaatttaagttttacTCAGTTGA
TAGCCAATAGATTctcatcattttcttttttctcttttgtagACTGCAAA
GGAAGGTGTTAATCAACCAGGTaacttgaaatttgtttttgatacTAAAA
TGCTGTCTGGGCTCAAATCACTGCTTGTTCTATTCACATCTCTAGATTCT
TCATCCATGCATGTTTAATAAGAAATTGCATTCATTCCATTTGTCtgctc
ctttgtttttattagaTTATTTTATTGCTGCAATCTACATTtcttgtttc
aatattttttagtgTTTATTGGCGCAGATTCCCAGAAATTCCCTGAGCAA
AAAGTAAGTTTACGTTTTCTTTCTGGGCAAAGTTGCCCTACATTATACTG
AAATGTTAACAATGTTGGTCTTTAATTTAATGGAACAGAATTGCTTTTAG
GAAAGAAGTCTTTATATGAATGCTTAATTCTTTATGGAACTCTAATTAGT
TACTTATGAGGATGCATATCACACTGTCGACATCAAATGTTTATAaatct
ttctaaattttatCATAACATTTTTAGATCAACGAAGCTCAAGGAAAACA
AGCACCAATTGGAAATAACCATTTGAACGGTGGAATGCCTGAAGCATATA
TGTCTGCAAGTGGTTATTACGCTAACAACACTGGCTTTCCAGCCATGTCT
TTCCCAAATTTTACGCAACCAGCTCAGTGGTCAACTGCTACAAACAATGC
ACCTCCACCAAATACTCAAAACTTTGATCATTCTGCTGCCGCAGCAATGC
CCTATAGCACTATGAACGCTGCACCTAACCCCTCTGCAAATGGGGATGCT
CCTCCGCAAAACCCTCAGTATGTTACTGCAGATCATTTGTTTAACCAGAA
CAATTCTACCTATCAAAATGCTTTTTCTGCTGCACCATTCATGAATGGAA
GCTGGTCGTACTTTAACAACCCTAGCtcttatttttttccaaccGGAAAT
GGTGATTTGAACTTGAATTGGGGTACTGCTGCTCCAACAGATAATCCAAA
TAATGCTTTGTTTCAAGATCTTTACAAGCCACCTCCGGCACCTGCAGAAG
TAGAAAAGCCTAAGAACGAGGCTGCTCCACCAACTGAACTGTCGTCAAGT
TTTGAGAAGAGTGAAATTAAGCCTCCTGTTTCTGCTGTTTCAGTAGAGCA
GGTTGAACAATCTTTGTCTTCAATGACTGTAAACCCTCCTGAAAAGGAAG
TTGAAAATAACCTTGAAACTCCCGTTGTTGCTCCAACACCTGCTAGTCTG
CCTCCAAGTAGCACTGCCGTTAGTGCACCTGTGAAACATGTTAGCTCAGC
TCCTGCTCCACCTTCTAAACCTACCGGACACTCCAATGCACCAGCCAAGC
CCATGTCGTGGGCATCTGTTGCAAGTAAACCTGCTTCGAGTAAACCTCCA
CCGAAGAAGGTTCCACCTAAGACTGTCGCACCAGTCACAAATAGTAAACC
AAGTTATTCTACGCAACTAGGAACTGCCAATAATAACAAAGGAAAGCAAC
AACAACCTTCTGGAGGACGTTGGTCTCGCCAAAACCAGGGAAACCAGAAC
AGTAGTAATGCTGGAATTGATAATACTGTTGCTGTGCCTAATGATAGTCA
TTTAGACATTAACCGAATGAAGGATAACTCGCCATTGTTGAAGAAATTGA
TGCATAAGTATAATTTTAATCCGAGAGATTTGGCTATTGATATGAAGAAC
GCAAGGTTTTTTATTATTAAGAGTTATAGTGAGGATGATATTTTCCGTTC
AATTAAGTATTCTAGTTGGACATCTACCGAGCATGGAAACCGTCGCTTGA
ATGATGCATTCACTGCCCAAGAGAAAACCGGTGTCAAGACACCAATTTAT
CTTTTGTTCAGTGTTAATAGCAGTGGACATTTTTGCGGTGTGGCCGAAAT
GAAATCCAATGTCGACTTTGATGTCGAGACTGGAATTTTTGTTCAAGATA
AATGGAAGGGACGTTTTGATGTTCGTTGGATTTATGTGAAGGATGTGCCC
AACAATACATTACGTCACATCCGTTTGGAAAATAATGAGAACAAACCAGT
GACCAATTCTCGTGACACTCAGGAGGTCCATCCTGACAAGGCGAAACAAG
TATTGAAAATTATTCATAATTACAAGGCGCAAACCTCAATCTTTGATGAT
TTCTCTCATTACGAGAAGAGACAAGAAGAAGATGCCAAATTGAGAGTAAG
TGACAattcttttctttctctttgAGCTTCTGTAAACCTGCACCCCTTTG
ATAGATTCTTTCTACGTTgattttcattgtcttttactTTGCATAAGGGA
AAGTTCTTACAGGTCTTTATTATGTTTAACTCGTTTTGAACAGGCTAACC
TCTTCATTAGTCAGAAAATAACGTGGAATAGTCAAAGTGAAATCTCCTCT
GAAAAAAATCctcttttcaattttgatttgatgTCCACCACAATTGTTTT
AGcccttataaaaaagcattatcgttttttgaattaaattttaacaaatg
cCACAAAAAGTGCTGGTTAAAGTTATTTTGGACTAATTTTTGTAGCCAAT
TTTTGTAGCCAATTGCTACCCTTAGGTGCCatccgtttattaatttttag
ctGATAAAAAGGTCTTTCCCGGTCAGCCCTAACCAACGCATTAGACAcct
aaaagttatgttttagatttttgcagatttggtcccaaaaatattaaaat
gcaTTAACATTTGAATCACAACAAAGCTGCTCGATTCCTTCTCCGGCATT
CTATACTACCCCACTGAGGTAATCTGGAAAGCCTTTTAAAGTCCCAAATT
AAAGTCAGTCAATCAAATTAGTAATTAAATCTAATGGAACTTGCTGGCTC
AATAGTAAACAGGGATTGACAAATtaattctcttttttctttcagagcAA
AAAGATGCCAGAACCAAATctttaaattgttttgtttcattggaaaattt
ttcaccTCAATTATACAATGGTCATCTCAAAAGGAGTGTTGTTTTTGATT
TATTGGGTAAttataaaattattataaaacaaCAATCAAGTCTATTGTAA
TTTGAATAATATGTTGTATGAATAAGCATAATGAAAATGAATCGCTTACT
AGGGGACAGCATCATCATTCACAAAACTTTCCCCTTTTTGTGTTCAGTTT
TGTTGTTTACCTTCGTTTTCTCTCCGTCTCCTCGTTTGCGTTGTAGTAAG
TTTGTCATACACTGCATCTCTCATATTTCATACGTTTGAAAAGTGTTCGA
AGATCCCTCTTATCATATCAAAGTACCTGTCCATGCTGTCCCCTCGgtat
ttgataaatttgaattgcttttttatttcttgctAAAACTTTTGTCAACA
TCGCTATATGCTTACGTTATGGGAACATCTCCACCATCCATCAAATGAGT
TATGAAATAATAACAAACTCGTTTGATCCTCAAATGACGAAtaagaaaaa
gaacaaaagaacatGTGAAAGTTTTCGTTCTGTCTTTTATCCTTCGACAC
AGGTTTTAAGATTTATTCCCTAGTTTACTCTGACGTTTTTTGTAGAACCC
ATCCCTTGTG

Coding sequence (CDS) from alignment at sc0002782:1864..6323+

>TCONS_00041274 ID=TCONS_00041274|Name=TCONS_00041274|organism=Clytia hemisphaerica|type=CDS|length=3282bp|location=Sequence derived from alignment at sc0002782:1864..6323+ (Clytia hemisphaerica)
ATGCCTGAAGCATATATGTCTGCAAGTGGTTATTACGCTAACAACACTGG
CTTTCCAGCCATGTCTTTCCCAAATTTTACGCAACCAGCTCAGTGGTCAA
CTGCTACAAACAATGCACCTCCACCAAATACTCAAAACTTTGATCATTCT
GCTGCCGCAGCAATGCCCTATAGCACTATGAACGCTGCACCTAACCCCTC
TGCAAATGGGGATGCTCCTCCGCAAAACCCTCAGTATGTTACTGCAGATC
ATTTGTTTAACCAGAACAATTCTACCTATCAAAATGCTTTTTCTGCTGCA
CCATTCATGAATGGAAGCTGGTCGTACTTTAACAACCCTAGCtcttattt
ttttccaaccGGAAATGGTGATTTGAACTTGAATTGGGGTACTGCTGCTC
CAACAGATAATCCAAATAATGCTTTGTTTCAAGATCTTTACAAGCCACCT
CCGGCACCTGCAGAAGTAGAAAAGCCTAAGAACGAGGCTGCTCCACCAAC
TGAACTGTCGTCAAGTTTTGAGAAGAGTGAAATTAAGCCTCCTGTTTCTG
CTGTTTCAGTAGAGCAGGTTGAACAATCTTTGTCTTCAATGACTGTAAAC
CCTCCTGAAAAGGAAGTTGAAAATAACCTTGAAACTCCCGTTGTTGCTCC
AACACCTGCTAGTCTGCCTCCAAGTAGCACTGCCGTTAGTGCACCTGTGA
AACATGTTAGCTCAGCTCCTGCTCCACCTTCTAAACCTACCGGACACTCC
AATGCACCAGCCAAGCCCATGTCGTGGGCATCTGTTGCAAGTAAACCTGC
TTCGAGTAAACCTCCACCGAAGAAGGTTCCACCTAAGACTGTCGCACCAG
TCACAAATAGTAAACCAAGTTATTCTACGCAACTAGGAACTGCCAATAAT
AACAAAGGAAAGCAACAACAACCTTCTGGAGGACGTTGGTCTCGCCAAAA
CCAGGGAAACCAGAACAGTAGTAATGCTGGAATTGATAATACTGTTGCTG
TGCCTAATGATAGTCATTTAGACATTAACCGAATGAAGGATAACTCGCCA
TTGTTGAAGAAATTGATGCATAAGTATAATTTTAATCCGAGAGATTTGGC
TATTGATATGAAGAACGCAAGGTTTTTTATTATTAAGAGTTATAGTGAGG
ATGATATTTTCCGTTCAATTAAGTATTCTAGTTGGACATCTACCGAGCAT
GGAAACCGTCGCTTGAATGATGCATTCACTGCCCAAGAGAAAACCGGTGT
CAAGACACCAATTTATCTTTTGTTCAGTGTTAATAGCAGTGGACATTTTT
GCGGTGTGGCCGAAATGAAATCCAATGTCGACTTTGATGTCGAGACTGGA
ATTTTTGTTCAAGATAAATGGAAGGGACGTTTTGATGTTCGTTGGATTTA
TGTGAAGGATGTGCCCAACAATACATTACGTCACATCCGTTTGGAAAATA
ATGAGAACAAACCAGTGACCAATTCTCGTGACACTCAGGAGGTCCATCCT
GACAAGGCGAAACAAGTATTGAAAATTATTCATAATTACAAGGCGCAAAC
CTCAATCTTTGATGATTTCTCTCATTACGAGAAGAGACAAGAAGAAGATG
CCAAATTGAGAagcAAAAAGATGCCAGAACCAAATctttaaATGCCTGAA
GCATATATGTCTGCAAGTGGTTATTACGCTAACAACACTGGCTTTCCAGC
CATGTCTTTCCCAAATTTTACGCAACCAGCTCAGTGGTCAACTGCTACAA
ACAATGCACCTCCACCAAATACTCAAAACTTTGATCATTCTGCTGCCGCA
GCAATGCCCTATAGCACTATGAACGCTGCACCTAACCCCTCTGCAAATGG
GGATGCTCCTCCGCAAAACCCTCAGTATGTTACTGCAGATCATTTGTTTA
ACCAGAACAATTCTACCTATCAAAATGCTTTTTCTGCTGCACCATTCATG
AATGGAAGCTGGTCGTACTTTAACAACCCTAGCtcttatttttttccaac
cGGAAATGGTGATTTGAACTTGAATTGGGGTACTGCTGCTCCAACAGATA
ATCCAAATAATGCTTTGTTTCAAGATCTTTACAAGCCACCTCCGGCACCT
GCAGAAGTAGAAAAGCCTAAGAACGAGGCTGCTCCACCAACTGAACTGTC
GTCAAGTTTTGAGAAGAGTGAAATTAAGCCTCCTGTTTCTGCTGTTTCAG
TAGAGCAGGTTGAACAATCTTTGTCTTCAATGACTGTAAACCCTCCTGAA
AAGGAAGTTGAAAATAACCTTGAAACTCCCGTTGTTGCTCCAACACCTGC
TAGTCTGCCTCCAAGTAGCACTGCCGTTAGTGCACCTGTGAAACATGTTA
GCTCAGCTCCTGCTCCACCTTCTAAACCTACCGGACACTCCAATGCACCA
GCCAAGCCCATGTCGTGGGCATCTGTTGCAAGTAAACCTGCTTCGAGTAA
ACCTCCACCGAAGAAGGTTCCACCTAAGACTGTCGCACCAGTCACAAATA
GTAAACCAAGTTATTCTACGCAACTAGGAACTGCCAATAATAACAAAGGA
AAGCAACAACAACCTTCTGGAGGACGTTGGTCTCGCCAAAACCAGGGAAA
CCAGAACAGTAGTAATGCTGGAATTGATAATACTGTTGCTGTGCCTAATG
ATAGTCATTTAGACATTAACCGAATGAAGGATAACTCGCCATTGTTGAAG
AAATTGATGCATAAGTATAATTTTAATCCGAGAGATTTGGCTATTGATAT
GAAGAACGCAAGGTTTTTTATTATTAAGAGTTATAGTGAGGATGATATTT
TCCGTTCAATTAAGTATTCTAGTTGGACATCTACCGAGCATGGAAACCGT
CGCTTGAATGATGCATTCACTGCCCAAGAGAAAACCGGTGTCAAGACACC
AATTTATCTTTTGTTCAGTGTTAATAGCAGTGGACATTTTTGCGGTGTGG
CCGAAATGAAATCCAATGTCGACTTTGATGTCGAGACTGGAATTTTTGTT
CAAGATAAATGGAAGGGACGTTTTGATGTTCGTTGGATTTATGTGAAGGA
TGTGCCCAACAATACATTACGTCACATCCGTTTGGAAAATAATGAGAACA
AACCAGTGACCAATTCTCGTGACACTCAGGAGGTCCATCCTGACAAGGCG
AAACAAGTATTGAAAATTATTCATAATTACAAGGCGCAAACCTCAATCTT
TGATGATTTCTCTCATTACGAGAAGAGACAAGAAGAAGATGCCAAATTGA
GAagcAAAAAGATGCCAGAACCAAATctttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025271XLOC_025271Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041274-proteinTCONS_00041274-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041274-exon-sc0002782-1491911889:1864..1927TCONS_00041274-exon-sc0002782-1491911889:1864..1927Clytia hemisphaericaexon
TCONS_00041274-exon-sc0002782-1510915933:1864..1927TCONS_00041274-exon-sc0002782-1510915933:1864..1927Clytia hemisphaericaexon
TCONS_00041274-exon-sc0002782-1575043694:1864..1927TCONS_00041274-exon-sc0002782-1575043694:1864..1927Clytia hemisphaericaexon
TCONS_00041274-exon-sc0002782-1491911889:2120..2160TCONS_00041274-exon-sc0002782-1491911889:2120..2160Clytia hemisphaericaexon
TCONS_00041274-exon-sc0002782-1510915933:2120..2160TCONS_00041274-exon-sc0002782-1510915933:2120..2160Clytia hemisphaericaexon
TCONS_00041274-exon-sc0002782-1575043694:2120..2160TCONS_00041274-exon-sc0002782-1575043694:2120..2160Clytia hemisphaericaexon
TCONS_00041274-exon-sc0002782-1491911889:3291..4958TCONS_00041274-exon-sc0002782-1491911889:3291..4958Clytia hemisphaericaexon
TCONS_00041274-exon-sc0002782-1510915933:3291..4958TCONS_00041274-exon-sc0002782-1510915933:3291..4958Clytia hemisphaericaexon
TCONS_00041274-exon-sc0002782-1575043694:3291..4958TCONS_00041274-exon-sc0002782-1575043694:3291..4958Clytia hemisphaericaexon
TCONS_00041274-exon-sc0002782-1491911889:5659..5873TCONS_00041274-exon-sc0002782-1491911889:5659..5873Clytia hemisphaericaexon
TCONS_00041274-exon-sc0002782-1510915933:5659..5873TCONS_00041274-exon-sc0002782-1510915933:5659..5873Clytia hemisphaericaexon
TCONS_00041274-exon-sc0002782-1575043694:5659..5873TCONS_00041274-exon-sc0002782-1575043694:5659..5873Clytia hemisphaericaexon
TCONS_00041274-exon-sc0002782-1491911889:6140..6323TCONS_00041274-exon-sc0002782-1491911889:6140..6323Clytia hemisphaericaexon
TCONS_00041274-exon-sc0002782-1510915933:6140..6323TCONS_00041274-exon-sc0002782-1510915933:6140..6323Clytia hemisphaericaexon
TCONS_00041274-exon-sc0002782-1575043694:6140..6323TCONS_00041274-exon-sc0002782-1575043694:6140..6323Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002782supercontigsc0002782:1864..6323 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
54.7594	53.6803	20.3885	17.9058	99.2733	87.3923	111.979	126.754	61.7403	93.2402	75.417	55.9377	107.249	104.678	71.5281	94.8389	70.4965	84.3638	82.4838	75.3765	69.0787	60.273	76.2423	84.4933	97.8994	100.752	100.055	94.7027	124.878	123.32
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007275YTH_domain
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
Blast
[Close]
BLAST of TCONS_00041274 vs. Swiss-Prot (Human)
Match: YTHD2 (YTH domain-containing family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.599e-82
Identity = 129/191 (67.54%), Postives = 155/191 (81.15%), Query Frame = 1 
Query: 1210 PLLKKLMHKYNFNPRDLAIDMKNARFFIIKSYSEDDIFRSIKYSSWTSTEHGNRRLNDAFTAQEKTGVKTPIYLLFSVNSSGHFCGVAEMKSNVDFDVETGIFVQDKWKGRFDVRWIYVKDVPNNTLRHIRLENNENKPVTNSRDTQEVHPDKAKQVLKIIHNYKAQTSIFDDFSHYEKRQEEDAKLRSKK 1782
            P+L+KL    N+NP+D   ++K+ R FIIKSYSEDDI RSIKY+ W STEHGN+RL+ A+ +    G   P+YLLFSVN SGHFCGVAEMKS VD++   G++ QDKWKGRFDVRWI+VKDVPN+ LRHIRLENNENKPVTNSRDTQEV  +KAKQVLKII +YK  TSIFDDFSHYEKRQEE+  ++ ++
Sbjct:  387 PVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKER 574
The following BLAST results are available for this feature:
BLAST of TCONS_00041274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YTHD21.599e-8267.54YTH domain-containing family protein 2 OS=Homo sap... [more]
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