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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041264 ID=TCONS_00041264|Name=TCONS_00041264|organism=Clytia hemisphaerica|type=transcript|length=1590bp
gtaagttttatattttaatactttctttttgcatatgttttgcatacttt
ctcagggaatttcaccactgcaattcggccaccataatttttgcatacaa
ttcaatatggcggatggaaaggcaacGCGGTAGGGCCAATATCCCCGAGA
GCCAAAAATAAGGTCTGCTTTTAAGGTTCACACATGCGCGCGCACATTTA
ATTTGacaaattaaagatggcggcaagagattttgttgattgccgacttg
attcttcgggatttactagatttaaaaaacccgacaaaatttactactgA
CCGACCGACTGGATTTGAAGATGACGCGAACGGAACATGTTTTAGCTTGC
TGCCCTATTGCGTGGATACAAAATAGGGGATGCATAACATTTTTTATATT
GTTGCTGTAAAATCAAAAGGTCTACAGTATTGCTGGTATTTTATTGGTTT
GATTGTCGTTTGActggctagttcgaaacgcagTGTCCTGCGCTGGTCTG
CTCAATCAACCTTAAAGACATAGGCAACAGAAGATCAATACTGgtGCCAT
TGCATCATCATCATCAGGTGGAGTGCAACAATAGTATAAATCAGCTTGCA
TCTATTCAGCTTTCACTGGCTTTCACGGATTTACTTTGAAAACTCAGCTA
AACTTGAATCTATTCAGTTTATACGGATTAACTCGACAAACACGTTTAAT
TGTTACACTGATTTATTCGAAAAACTCGGCTAAACTTGAATTTACTCGGC
TGACATTGATATACTCGGCATCTACTCGGTTTACTCGGCTCAGATTTAAA
TAGCGAATTCAACCCATCTTGCAGCTTTCTCAGCCAATCCGAATTCCTTG
AGTTTGCTAggtttaaaagaaataaatacattGATATTGTTATTTAACTC
TCATTTCTTGTACCTGTTCCCTTCTAAATTTTCCAAAGCATGATTTTTGC
GATCCCACCGTGTGAAATTTGTGCGAGTAAGGATTGAAACTCGGCCTTCA
AGGAAGCGAAAACAAACTAGATATGACAAAGCACTGTTTATTGGTTTTTA
GActctgggccttcatgcccttggGCCTCTTGTTTTATATTCAAGAGAAT
AGGTTTTGTAAAACCTTCTATGAAttatcaaatagaaatagaaatagaaa
caatgAAAACTTGTCACATCTTCAGCCTGAACAAACAGCATCAATGCATC
ATTGGCGGCATTGGATTACTCTTATCTTAAGTGACACTGTAGCAGTTTTT
TTTGGTCGTCTGTGAAAGGTAGCAATCATAATTCTCTTAGTAATGCTCTC
AATTGATTTTAGAGATTTGTAAGCTAAGGTCTATTGTCAACAattgtcca
atcccgtaagTGATTGAATTGCCatcagtaataatctgagaagagaacaa
caacattttgacatcacacaaataaattacgctaGGAAAATCCACGAGGA
CAACACGCAGTCTTAATTTTTCGCAAGCTTGGGGGGGAAACGAAAGTGCT
CTATATTTTACATATGGGGAACATAGCTTCAGCCCCCCTTACTtttgggg
gggggctaaaaaatattttggcctttaaaccagacccgat Run BLAST on NCBI transcript from alignment at sc0002775:5259..7846- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041264 ID=TCONS_00041264|Name=TCONS_00041264|organism=Clytia hemisphaerica|type=transcript|length=2588bp|location=Sequence derived from alignment at sc0002775:5259..7846- (Clytia hemisphaerica)
GTAAGTTTTATATTTTAATACTTTCTTTTTGCATATGTTTTGCATACTTT
CTCAGGGAATTTCACCACTGCAATTCGGCCACCATAATTTTTGCATACAA
TTCAATATGGCGGATGGAAAGGCAACGCGGTAGGGCCAATATCCCCGAGA
GCCAAAAATAAGGTCTGCTTTTAAGGTTCACACATGCGCGCGCACATTTA
ATTTGACAAATTAAAGATGGCGGCAAGAGATTTTGTTGATTGCCGACTTG
ATTCTTCGGGATTTACTAGATTTAAAAAACCCGACAAAATTTACTACTGA
CCGACCGACTGGATTTGAAGATGACGCGAACGGAACATGTTTTAGCTTGC
TGCCCTATTGCGTGGATACAAAATAGGGGATGCATAACATTTTTTATATT
GTTGCTGTAAAATCAAAAGGTCTACAGTATTGCTGGTATTTTATTGGTTT
GATTGTCGTTTGACTGGCTAGTTCGAAACGCAGGTCACAATTTTTCTCAA
AAGAACGTGGCAATAGAGCAACAGTACTCTGAGACCAGAATTCCCTCTCA
CCAAACCATTTTCAAAAAGTGACCCAGGAGGGGGAGTGGGTTTGAGTCTG
CCCTAAAATTTAAGAACCTTTGTTTTAATCCCAGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTAATCCCAGATGCGTCCAAAAAAGCAGTAGCACAAAACAAG
TCAGGAGAAGTTTTAACTTAGGTGAGAACTGACTTGGGTGTAATCAGTGA
AAAATACTGTCATTTTCAGACAGATACTAATCTTTTTGTTTTCTTTACAG
TGTCCTGCGCTGGTCTGCTCAATCAACCTTAAAGACATAGGCAACAGAAG
ATCAATACTGGTGAGTTCTCTGTCACTTTCTCGGTTTGAAGTGGAAGATA
ACGCTTGAGTGATTCTAAATAATCACACTTTTTCCAAAAACATACCTGAC
CTTTACTATGAGCGTACTGAGGCCACTTTTTTCATCTACTCTTCAAGCCC
TACCTGTTGGTCATATTAGATATGAGAATTTCTGACCTCCAAATTTTCGA
CCCTGTGGATTTCTAAATCCTACCTATCAGTGAGAATAAAAAACACTAAG
AGAATTGTTCTATTGAAAAGTGGTGCGACAGCGAGGCATCGCCTGGTCTA
TTTCCTCAAGATTAGTCAGTCATAGTCCAAACCCCTTCAAAAGAGACTTT
AAAGTGCAAAAGAGGGGGGTCTGAGAGAAAAAGTTTCATAGAAAGGAGAT
GCAACAAATATTTATGTTATATAATTAATGAAACTCCTTGGCAGTGATAA
CATTAAGTAATTATTCTTTGTAGGGAGCTCAATCGCATAGAATCACATCA
ACAGATCAATGTTGCTTTATTTTAACACACCCCTTTTAATTGAAGATCTT
GGGATGTATACATTTAATATATTGAATTTTTTCTGTTTTAGGTGCCATTG
CATCATCATCATCAGGTGGAGTGCAACAATAGTATAAATCAGCTTGCATC
TATTCAGCTTTCACTGGCTTTCACGGATTTACTTTGAAAACTCAGCTAAA
CTTGAATCTATTCAGTTTATACGGATTAACTCGACAAACACGTTTAATTG
TTACACTGATTTATTCGAAAAACTCGGCTAAACTTGAATTTACTCGGCTG
ACATTGATATACTCGGCATCTACTCGGTTTACTCGGCTCAGATTTAAATA
GCGAATTCAACCCATCTTGCAGCTTTCTCAGCCAATCCGAATTCCTTGAG
TTTGCTAGGTTTAAAAGAAATAAATACATTGATATTGTTATTTAACTCTC
ATTTCTTGTACCTGTTCCCTTCTAAATTTTCCAAAGCATGATTTTTGCGA
TCCCACCGTGTGAAATTTGTGCGAGTAAGGATTGAAACTCGGCCTTCAAG
GAAGCGAAAACAAACTAGATATGACAAAGCACTGTTTATTGGTTTTTAGA
CTCTGGGCCTTCATGCCCTTGGGCCTCTTGTTTTATATTCAAGAGAATAG
GTTTTGTAAAACCTTCTATGAATTATCAAATAGAAATAGAAATAGAAACA
ATGAAAACTTGTCACATCTTCAGCCTGAACAAACAGCATCAATGCATCAT
TGGCGGCATTGGATTACTCTTATCTTAAGTGACACTGTAGCAGTTTTTTT
TGGTCGTCTGTGAAAGGTAGCAATCATAATTCTCTTAGTAATGCTCTCAA
TTGATTTTAGAGATTTGTAAGCTAAGGTCTATTGTCAACAATTGTCCAAT
CCCGTAAGTGATTGAATTGCCATCAGTAATAATCTGAGAAGAGAACAACA
ACATTTTGACATCACACAAATAAATTACGCTAGGAAAATCCACGAGGACA
ACACGCAGTCTTAATTTTTCGCAAGCTTGGGGGGGAAACGAAAGTGCTCT
ATATTTTACATATGGGGAACATAGCTTCAGCCCCCCTTACTTTTGGGGGG
GGGCTAAAAAATATTTTGGCCTTTAAACCAGACCCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041264-exon-sc0002775-1575043694:7364..7846 | TCONS_00041264-exon-sc0002775-1575043694:7364..7846 | Clytia hemisphaerica | exon |
| TCONS_00041264-exon-sc0002775-1575043694:6887..6946 | TCONS_00041264-exon-sc0002775-1575043694:6887..6946 | Clytia hemisphaerica | exon |
| TCONS_00041264-exon-sc0002775-1575043694:5259..6305 | TCONS_00041264-exon-sc0002775-1575043694:5259..6305 | Clytia hemisphaerica | exon |
| TCONS_00041264-exon-sc0002775-1510915933:7364..7846 | TCONS_00041264-exon-sc0002775-1510915933:7364..7846 | Clytia hemisphaerica | exon |
| TCONS_00041264-exon-sc0002775-1510915933:6887..6946 | TCONS_00041264-exon-sc0002775-1510915933:6887..6946 | Clytia hemisphaerica | exon |
| TCONS_00041264-exon-sc0002775-1510915933:5259..6305 | TCONS_00041264-exon-sc0002775-1510915933:5259..6305 | Clytia hemisphaerica | exon |
| TCONS_00041264-exon-sc0002775-1491911889:7364..7846 | TCONS_00041264-exon-sc0002775-1491911889:7364..7846 | Clytia hemisphaerica | exon |
| TCONS_00041264-exon-sc0002775-1491911889:6887..6946 | TCONS_00041264-exon-sc0002775-1491911889:6887..6946 | Clytia hemisphaerica | exon |
| TCONS_00041264-exon-sc0002775-1491911889:5259..6305 | TCONS_00041264-exon-sc0002775-1491911889:5259..6305 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002775 | supercontig | sc0002775:5259..7846 - |
Blast
The following BLAST results are available for this feature:
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