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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041262 ID=TCONS_00041262|Name=TCONS_00041262|organism=Clytia hemisphaerica|type=transcript|length=532bp
gaaacataaaaacaaatacCATCAACTTTCAAGACTTTCAATCATCGGAA
GAACAGAATCTGGTGGAAGTGGAAAACgaaaaagacgATACATTATTGCC
ACCGAATTCAAATTCAGAAAACACCGTTTTGGAAACTCTACAAAAAGATG
TCGAGAGCATCAAAAAATCAATGGAAACACTCCAAAAATCTATAACATTC
GCCAACGACAACCTTTCAAACATTTACAAAGAgatgaaagaaataaaaaa
attaataatggttaaaaaacaaaaacaaaaaacaacatcacCAATAAAAC
CGAACAACAAACCCCATCAAAACAATTCCCAATCCGTATGTAGTGGTAGT
GGTAGTCAGCAGCCAGTGGAGCCAATGGCTAATGTAGAGATCCTGGTAGA
ATGTCGTGATGATGTAGAAAGTCAAACCCCTCTTGATATTGATATTAATT
TGAGCCCATTACTGTCACCAGTCGAAGAGACAATGCCCATTTTATTCGAA
GATCAAATTTTACATGACAATAACAATGAAAA Run BLAST on NCBI protein sequence of TCONS_00041262-protein >TCONS_00041262-protein ID=TCONS_00041262-protein|Name=TCONS_00041262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
NIKTNTINFQDFQSSEEQNLVEVENEKDDTLLPPNSNSENTVLETLQKDV
ESIKKSMETLQKSITFANDNLSNIYKEMKEIKKLIMVKKQKQKTTSPIKP
NNKPHQNNSQSVCSGSGSQQPVEPMANVEILVECRDDVESQTPLDIDINL
SPLLSPVEETMPILFEDQILHDNNNE Run BLAST on NCBI transcript from alignment at sc0002774:5274..6597- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041262 ID=TCONS_00041262|Name=TCONS_00041262|organism=Clytia hemisphaerica|type=transcript|length=1324bp|location=Sequence derived from alignment at sc0002774:5274..6597- (Clytia hemisphaerica)
GAAACATAAAAACAAATACCATCAACTTTCAAGACTTTCAATCATCGGAA
GAACAGAATCTGGTGGAAGTGGAAAACGGTAATTTCAAATCAATTATAGT
TTTCTTGTAGTACCCTAGGATGTACCCCCCCCCCAAAGCTAGATAGGATT
ATAAAGGAAATATCCCAAGAAGATCGGGTCTTGGAATTTATAGAATTACA
TGTTTTTTATAAGCATGCGAAAACAGGCTCAGAGATGCTTAGGTTGAGAA
CTATAATAAGGCTGAAAAAATGCTTGAGTTATGCTTATATCCTAACAAAA
ATCTTTCGAGGATGCTTACAAAAGATAGTGAATCAGGCTCAAAATATGCT
TAAATTTGCCTATTATAATGTTATAATTCTTGGCTGAGTTAGAACAAACG
AGACTGGAGAAAGGGGAAATTTGCTTTGCAATGGCTTCACAAAACAACAA
AGTAGCTGTAATGCTCAGCATATGCTTAATTTTTTCCCATATCTGAGCCT
AGATATGCTTATAAGTGCAATGCTTATAAAAAAAAACATGTAAACCAATA
AATTTTTTTTAGAAAAAGACGATACATTATTGCCACCGAATTCAAATTCA
GAAAACACCGTTTTGGTAAGTTTACATGATTCACCATATAATACTCAAGA
ATAGCACACTTAGACCCATAATCCCCAAAATCCTCAATAGACGACTTTTT
CACAATTTTCATACAAATTTGCATCCAGAAAAAAAGACAATTCGAGGCAG
AAATCTTAGAAGAACTTAGAAGATGCAAAATTTAGGCAGCTTTTTAGCTT
CCTGATTTATTAAATTAAATTTCCTCTAAAGTCGAGAATTTTCTAGTCGC
AAAATATTTTGACATTAAAGTACATTTTTCAGCAACGGGGGAAAAAGTAA
ACTTAATTGTTCTATTTTATCAGGAAACTCTACAAAAAGATGTCGAGAGC
ATCAAAAAATCAATGGAAACACTCCAAAAATCTATAACATTCGCCAACGA
CAACCTTTCAAACATTTACAAAGAGATGAAAGAAATAAAAAAATTAATAA
TGGTTAAAAAACAAAAACAAAAAACAACATCACCAATAAAACCGAACAAC
AAACCCCATCAAAACAATTCCCAATCCGTATGTAGTGGTAGTGGTAGTCA
GCAGCCAGTGGAGCCAATGGCTAATGTAGAGATCCTGGTAGAATGTCGTG
ATGATGTAGAAAGTCAAACCCCTCTTGATATTGATATTAATTTGAGCCCA
TTACTGTCACCAGTCGAAGAGACAATGCCCATTTTATTCGAAGATCAAAT
TTTACATGACAATAACAATGAAAA Coding sequence (CDS) from alignment at sc0002774:5274..6597- >TCONS_00041262 ID=TCONS_00041262|Name=TCONS_00041262|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0002774:5274..6597- (Clytia hemisphaerica)
GAAACTCTACAAAAAGATGTCGAGAGCATCAAAAAATCAATGGAAACACT
CCAAAAATCTATAACATTCGCCAACGACAACCTTTCAAACATTTACAAAG
AGATGAAAGAAATAAAAAAATTAATAATGGTTAAAAAACAAAAACAAAAA
ACAACATCACCAATAAAACCGAACAACAAACCCCATCAAAACAATTCCCA
ATCCGTATGTAGTGGTAGTGGTAGTCAGCAGCCAGTGGAGCCAATGGCTA
ATGTAGAGATCCTGGTAGAATGTCGTGATGATGTAGAAAGTCAAACCCCT
CTTGATATTGATATTAATTTGAGCCCATTACTGTCACCAGTCGAAGAGAC
AATGCCCATTTTATTCGAAGATCAAATTTTACATGACAATAACAATGAAA
AAAAGACGATACATTATTGCCACCGAATTCAAATTCAGAAAACACCGTTT
TGAACATAAAAACAAATACCATCAACTTTCAAGACTTTCAATCATCGGAA
GAACAGAATCTGGTGGAAGTGGAAAACGGAAACTCTACAAAAAGATGTCG
AGAGCATCAAAAAATCAATGGAAACACTCCAAAAATCTATAACATTCGCC
AACGACAACCTTTCAAACATTTACAAAGAGATGAAAGAAATAAAAAAATT
AATAATGGTTAAAAAACAAAAACAAAAAACAACATCACCAATAAAACCGA
ACAACAAACCCCATCAAAACAATTCCCAATCCGTATGTAGTGGTAGTGGT
AGTCAGCAGCCAGTGGAGCCAATGGCTAATGTAGAGATCCTGGTAGAATG
TCGTGATGATGTAGAAAGTCAAACCCCTCTTGATATTGATATTAATTTGA
GCCCATTACTGTCACCAGTCGAAGAGACAATGCCCATTTTATTCGAAGAT
CAAATTTTACATGACAATAACAATGAAAAAAAGACGATACATTATTGCCA
CCGAATTCAAATTCAGAAAACACCGTTTTGAACATAAAAACAAATACCAT
CAACTTTCAAGACTTTCAATCATCGGAAGAACAGAATCTGGTGGAAGTGG
AAAACGGAAACTCTACAAAAAGATGTCGAGAGCATCAAAAAATCAATGGA
AACACTCCAAAAATCTATAACATTCGCCAACGACAACCTTTCAAACATTT
ACAAAGAGATGAAAGAAATAAAAAAATTAATAATGGTTAAAAAACAAAAA
CAAAAAACAACATCACCAATAAAACCGAACAACAAACCCCATCAAAACAA
TTCCCAATCCGTATGTAGTGGTAGTGGTAGTCAGCAGCCAGTGGAGCCAA
TGGCTAATGTAGAGATCCTGGTAGAATGTCGTGATGATGTAGAAAGTCAA
ACCCCTCTTGATATTGATATTAATTTGAGCCCATTACTGTCACCAGTCGA
AGAGACAATGCCCATTTTATTCGAAGATCAAATTTTACATGACAATAACA
ATGAAAAAAAGACGATACATTATTGCCACCGAATTCAAATTCAGAAAACA
CCGTTTTGAACATAAAAACAAATACCATCAACTTTCAAGACTTTCAATCA
TCGGAAGAACAGAATCTGGTGGAAGTGGAAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041262-exon-sc0002774-1575043694:6520..6597 | TCONS_00041262-exon-sc0002774-1575043694:6520..6597 | Clytia hemisphaerica | exon |
| TCONS_00041262-exon-sc0002774-1575043694:5983..6035 | TCONS_00041262-exon-sc0002774-1575043694:5983..6035 | Clytia hemisphaerica | exon |
| TCONS_00041262-exon-sc0002774-1575043694:5274..5674 | TCONS_00041262-exon-sc0002774-1575043694:5274..5674 | Clytia hemisphaerica | exon |
| TCONS_00041262-exon-sc0002774-1510915933:6520..6597 | TCONS_00041262-exon-sc0002774-1510915933:6520..6597 | Clytia hemisphaerica | exon |
| TCONS_00041262-exon-sc0002774-1510915933:5983..6035 | TCONS_00041262-exon-sc0002774-1510915933:5983..6035 | Clytia hemisphaerica | exon |
| TCONS_00041262-exon-sc0002774-1510915933:5274..5674 | TCONS_00041262-exon-sc0002774-1510915933:5274..5674 | Clytia hemisphaerica | exon |
| TCONS_00041262-exon-sc0002774-1491911889:6520..6597 | TCONS_00041262-exon-sc0002774-1491911889:6520..6597 | Clytia hemisphaerica | exon |
| TCONS_00041262-exon-sc0002774-1491911889:5983..6035 | TCONS_00041262-exon-sc0002774-1491911889:5983..6035 | Clytia hemisphaerica | exon |
| TCONS_00041262-exon-sc0002774-1491911889:5274..5674 | TCONS_00041262-exon-sc0002774-1491911889:5274..5674 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002774 | supercontig | sc0002774:5274..6597 - |
Blast
The following BLAST results are available for this feature:
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