TCONS_00041255 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041255
Unique NameTCONS_00041255
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041255 ID=TCONS_00041255|Name=TCONS_00041255|organism=Clytia hemisphaerica|type=transcript|length=669bp
GGATTTggttaaaaagatttttggagGGTGGCGTATCATGTATAATATAA
AGTaaacataaaaaacaaaagagtGTGTCAACAATAAACATgctaagttt
gaaaaaaaaatttcataagaaGAGAAGCTGAAAAAAGTCCAGCAAACGCA
GTTTATTGAGGTTACTATTAAAAATTACTATTAAAAACAGAGTAAGGAGG
TAAGCGAGCAGATTATTTTTTGAGCAGATTATATCGAAAACACCAAAAAT
TAACGAATAATTTCAACATAGTAGTCAATATATTCATTAAAGGATTAAGT
CTTCCAAcaaatttgatcatttttgaaataaagcATCCATGCTTATTGTC
GTCTAAGGGCATTTTTTGGACTGGGATCCGGTCtggaaaatcaaaattgt
caataaataaaaaaaaaattaccccagatattcactcaaggaacaagtgt
acTAAATGTCAGCCAAAtatgatcatttttgaagtttctagACTGTCCCA
TTGGCTTACGGTTATTTTAGACCATCTTTTGGACTGGAATCCAGTCTTCC
GatccgaaaaataaaaaattttgaggTTGCGTTCGTAAATCAATttattt
tgctcactttttgatcatttgATTTATAGAAATAATCTCAAGAGTTGAGC
TTGTTAACGTGATTAAANN
Run BLAST on NCBI

transcript from alignment at sc0002771:18201..18869

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041255 ID=TCONS_00041255|Name=TCONS_00041255|organism=Clytia hemisphaerica|type=transcript|length=669bp|location=Sequence derived from alignment at sc0002771:18201..18869 (Clytia hemisphaerica)
NNTTTAATCACGTTAACAAGCTCAACTCTTGAGATTATTTCTATAAATca
aatgatcaaaaagtgagcaaaataaATTGATTTACGAACGCAAcctcaaa
attttttatttttcggatCGGAAGACTGGATTCCAGTCCAAAAGATGGTC
TAAAATAACCGTAAGCCAATGGGACAGTctagaaacttcaaaaatgatca
taTTTGGCTGACATTTAgtacacttgttccttgagtgaatatctggggta
attttttttttatttattgacaattttgattttccaGACCGGATCCCAGT
CCAAAAAATGCCCTTAGACGACAATAAGCATGGATgctttatttcaaaaa
tgatcaaatttgTTGGAAGACTTAATCCTTTAATGAATATATTGACTACT
ATGTTGAAATTATTCGTTAATTTTTGGTGTTTTCGATATAATCTGCTCAA
AAAATAATCTGCTCGCTTACCTCCTTACTCTGTTTTTAATAGTAATTTTT
AATAGTAACCTCAATAAACTGCGTTTGCTGGACTTTTTTCAGCTTCTCtt
cttatgaaatttttttttcaaacttagcATGTTTATTGTTGACACactct
tttgttttttatgtttACTTTATATTATACATGATACGCCACCctccaaa
aatctttttaaccAAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025254XLOC_025254Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041255-exon-sc0002771-1491911889:18201..18869TCONS_00041255-exon-sc0002771-1491911889:18201..18869Clytia hemisphaericaexon
TCONS_00041255-exon-sc0002771-1510915933:18201..18869TCONS_00041255-exon-sc0002771-1510915933:18201..18869Clytia hemisphaericaexon
TCONS_00041255-exon-sc0002771-1575043694:18201..18869TCONS_00041255-exon-sc0002771-1575043694:18201..18869Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002771supercontigsc0002771:18201..18869 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.42674	5.9626	6.18852	10.1925	4.73259	2.57975	3.39223	3.89899	3.05966	4.16643	0.230534	0.05899	0.115796	0.178029	0.0819861	0	0.251199	0.120071	0	0	0	2.62957	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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