TCONS_00041242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041242
Unique NameTCONS_00041242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041242 ID=TCONS_00041242|Name=TCONS_00041242|organism=Clytia hemisphaerica|type=transcript|length=623bp
ATTTAANTGTTAAGGCTGGTGAGGCTTTCAATTCAAATGTAGTCAATGAA
GTAGATGGCGAGTCTATTGAGAGTACCCCTTTAACTGAAGACAATTCAAG
TGGTGAATTTCTTGGCCAACATGTTGATGAACTCGATGCAACAAATTCCC
AACATTGCAACTCAGACCTTGAAACAGATGATAGTTACACAGTTCTTGGA
GCAAACATCCACCAAAAAGAAGCAATACTCACAGCGTGTGATTATCAAAG
TGATTATGTCTATAAAGAAGATGGCAAGTTTGTACTTAATGAGTCAGTTT
ATGAGACCGAGGTCTCTAACCCAATAGGCGAGATCNACATAGGCTGGCTA
GCCTAGGGTATTtaagaaatttgttcttttcttttactgCTGATTGAAAA
GATTTCATAAAGTagcttattttttgtcaaaaacacTTGGTGTTGAACTA
ggatattcatgtttttttggTGGATTTGATGTATACATTCTTCTCAGTAG
CTAAAGTTGATATGAAAAACGTGATCAGTATGAGTAGCCTAGTTGCACAG
CAAGTAAAGTTTCTTATCCTTTATTTAGATCATGATGGACATATCTCAAG
TAGAGAAGTGGTGTGAACAATCG
Run BLAST on NCBI

protein sequence of TCONS_00041242-protein

>TCONS_00041242-protein ID=TCONS_00041242-protein|Name=TCONS_00041242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
LXVKAGEAFNSNVVNEVDGESIESTPLTEDNSSGEFLGQHVDELDATNSQ
HCNSDLETDDSYTVLGANIHQKEAILTACDYQSDYVYKEDGKFVLNESVY
ETEVSNPIGEIXIGWLA
Run BLAST on NCBI

transcript from alignment at sc0002768:1..623

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041242 ID=TCONS_00041242|Name=TCONS_00041242|organism=Clytia hemisphaerica|type=transcript|length=623bp|location=Sequence derived from alignment at sc0002768:1..623 (Clytia hemisphaerica)
CGATTGTTCACACCACTTCTCTACTTGAGATATGTCCATCATGATCTAAA
TAAAGGATAAGAAACTTTACTTGCTGTGCAACTAGGCTACTCATACTGAT
CACGTTTTTCATATCAACTTTAGCTACTGAGAAGAATGTATACATCAAAT
CCAccaaaaaaacatgaatatccTAGTTCAACACCAAgtgtttttgacaa
aaaataagctACTTTATGAAATCTTTTCAATCAGcagtaaaagaaaagaa
caaatttcttaAATACCCTAGGCTAGCCAGCCTATGTNGATCTCGCCTAT
TGGGTTAGAGACCTCGGTCTCATAAACTGACTCATTAAGTACAAACTTGC
CATCTTCTTTATAGACATAATCACTTTGATAATCACACGCTGTGAGTATT
GCTTCTTTTTGGTGGATGTTTGCTCCAAGAACTGTGTAACTATCATCTGT
TTCAAGGTCTGAGTTGCAATGTTGGGAATTTGTTGCATCGAGTTCATCAA
CATGTTGGCCAAGAAATTCACCACTTGAATTGTCTTCAGTTAAAGGGGTA
CTCTCAATAGACTCGCCATCTACTTCATTGACTACATTTGAATTGAAAGC
CTCACCAGCCTTAACANTTAAAT

Coding sequence (CDS) from alignment at sc0002768:1..623

>TCONS_00041242 ID=TCONS_00041242|Name=TCONS_00041242|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0002768:1..623 (Clytia hemisphaerica)
CTAGGCTAGCCAGCCTATGTNGATCTCGCCTATTGGGTTAGAGACCTCGG
TCTCATAAACTGACTCATTAAGTACAAACTTGCCATCTTCTTTATAGACA
TAATCACTTTGATAATCACACGCTGTGAGTATTGCTTCTTTTTGGTGGAT
GTTTGCTCCAAGAACTGTGTAACTATCATCTGTTTCAAGGTCTGAGTTGC
AATGTTGGGAATTTGTTGCATCGAGTTCATCAACATGTTGGCCAAGAAAT
TCACCACTTGAATTGTCTTCAGTTAAAGGGGTACTCTCAATAGACTCGCC
ATCTACTTCATTGACTACATTTGAATTGAAAGCCTCACCAGCCTTAACAN
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025243XLOC_025243Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041242-proteinTCONS_00041242-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041242-exon-sc0002768-1491911889:1..623TCONS_00041242-exon-sc0002768-1491911889:1..623Clytia hemisphaericaexon
TCONS_00041242-exon-sc0002768-1510915933:1..623TCONS_00041242-exon-sc0002768-1510915933:1..623Clytia hemisphaericaexon
TCONS_00041242-exon-sc0002768-1575043694:1..623TCONS_00041242-exon-sc0002768-1575043694:1..623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002768supercontigsc0002768:1..623 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.428475	0.250698	0.485142	0.379708	3.12024	2.10037	3.96628	3.91947	1.94977	2.32565	3.03872	2.85362	2.05175	2.78183	1.6058	1.72326	0.578978	1.51655	0.819861	0.857926	2.07137	0.727446	0.294769	1.07195	8.09661	9.44311	0.23501	0.125404	0.570689	0.581442
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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