TCONS_00041155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041155
Unique NameTCONS_00041155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041155 ID=TCONS_00041155|Name=TCONS_00041155|organism=Clytia hemisphaerica|type=transcript|length=477bp
TTCAGGGATATCAGAAAAGTACAAAGATTACGCTGGTGAAGTCTCTTTAG
TTGCCCTACAAAAAGGAAATGGCGGTATTGGTCTTTCAATCGCCGATGGG
GACGGGGACCATATCTACGTCGTTGACGTCAAATCAGGCGGTGTCGCCGA
CGTTGACGGAAGGATACGTTCGGGTGACGAAATACTAGAGGTCAATGATG
TCCAGGTTCAAGGTCTTTCGCATTCGGACGCGTCCGCTATTCTAAGGAAA
GCCGAAGGTACTGCTAAGCTAGTGGTCGGCCGCCCGCACGACACAAGCGG
CTTCAAGAGTTTACGTCTACCTGCGGCCGGGAATACGGGGACACGGCGTA
TGAAAACGATACAACAAGAACAGACGATTACACTAAATAAGGTGAATata
ccagctggcacacaacattcatctaacgttatatagacgttgtgaacatt
agattaacgttgaaacaacgttgtgtg
Run BLAST on NCBI

protein sequence of TCONS_00041155-protein

>TCONS_00041155-protein ID=TCONS_00041155-protein|Name=TCONS_00041155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
SGISEKYKDYAGEVSLVALQKGNGGIGLSIADGDGDHIYVVDVKSGGVAD
VDGRIRSGDEILEVNDVQVQGLSHSDASAILRKAEGTAKLVVGRPHDTSG
FKSLRLPAAGNTGTRRMKTIQQEQTITLNKVNIPAGTQHSSNVI
Run BLAST on NCBI

transcript from alignment at sc0002723:314..1427-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041155 ID=TCONS_00041155|Name=TCONS_00041155|organism=Clytia hemisphaerica|type=transcript|length=1114bp|location=Sequence derived from alignment at sc0002723:314..1427- (Clytia hemisphaerica)
TTCAGGGATATCAGAAAAGTACAAAGATTACGCTGGTGAAGTCTCTTTAG
TTGCCCTACAAAAAGGAAATGGCGGTATTGGTCTTTCAATCGCCGATGGG
GACGGGGACCATATCTACGTCGTTGACGTCAAATCAGGCGGTGTCGCCGA
CGTTGACGGAAGGATACGTTCGGGTGACGAAATACTAGAGGTATGTATCA
TAAATATATGATTTGTTTGACTTCAACTAGGTTATAATTTAGCAGTTTTG
TTATGTTTTTACTTTTGAAGACGTGGAAATCCGTCCATTTGAAATCTTTT
GTTAGGATTTCCCAATAAGTTTTTGGGGAGAAATTTCGTAAAAATGATAT
TCCGTCCAGTTCCGCCTTATCCAGTTGCCAAAAATGTTTTAGACTGGATT
TCGTCCCTCTCATAATTGGTATTGCTATCGAATTAACATAAATNATGTTT
TAGACTGGATTTCGTCCCTCTCATAATTGGTATTGCTATCGAACTAACAT
AAATTCCTTTTTTATAAGAACGTTCAACATTTTCGTATGTTCTTAACTTT
GTGAGTTTTAGGCCTGAAATGTTCGTAACATGTTCTTATTTTCGCCATTT
TGTGAATATTTTCTCAAGAAATTAGGTATATTTTCTGCATACTGGTTTCG
ACTTTGCCGACACAAGATTTCCACTCCTCACAGCGGAACGAAACACAAGA
GACCGTTTGAAATGGGCAGAGTTTGTCAGAAGAGTCGCAAAGGTTCGATA
GACCTATACTGTTAAGTCAAGTCAAGTCAAGTTTGCCAAATAACTGTTTA
ATACCGTACATACTTCTTGTTCCCCAGGTCAATGATGTCCAGGTTCAAGG
TCTTTCGCATTCGGACGCGTCCGCTATTCTAAGGAAAGCCGAAGGTACTG
CTAAGCTAGTGGTCGGCCGCCCGCACGACACAAGCGGCTTCAAGAGTTTA
CGTCTACCTGCGGCCGGGAATACGGGGACACGGCGTATGAAAACGATACA
ACAAGAACAGACGATTACACTAAATAAGGTGAATATACCAGCTGGCACAC
AACATTCATCTAACGTTATATAGACGTTGTGAACATTAGATTAACGTTGA
AACAACGTTGTGTG

Coding sequence (CDS) from alignment at sc0002723:314..1427-

>TCONS_00041155 ID=TCONS_00041155|Name=TCONS_00041155|organism=Clytia hemisphaerica|type=CDS|length=870bp|location=Sequence derived from alignment at sc0002723:314..1427- (Clytia hemisphaerica)
GTCAATGATGTCCAGGTTCAAGGTCTTTCGCATTCGGACGCGTCCGCTAT
TCTAAGGAAAGCCGAAGGTACTGCTAAGCTAGTGGTCGGCCGCCCGCACG
ACACAAGCGGCTTCAAGAGTTTACGTCTACCTGCGGCCGGGAATACGGGG
ACACGGCGTATGAAAACGATACAACAAGAACAGACGATTACACTAAATAA
GGTGAATATACCAGCTGGCACACAACATTCATCTAACGTTATATAGTCAG
GGATATCAGAAAAGTACAAAGATTACGCTGGTGAAGTCTCTTTAGTTGCC
CTACAAAAAGGAAATGGCGGTATTGGTCTTTCAATCGCCGATGGGGACGG
GGACCATATCTACGTCGTTGACGTCAAATCAGGCGGTGTCGCCGACGTTG
ACGGAAGGATACGTTCGGGTGACGAAATACTAGAGGTCAATGATGTCCAG
GTTCAAGGTCTTTCGCATTCGGACGCGTCCGCTATTCTAAGGAAAGCCGA
AGGTACTGCTAAGCTAGTGGTCGGCCGCCCGCACGACACAAGCGGCTTCA
AGAGTTTACGTCTACCTGCGGCCGGGAATACGGGGACACGGCGTATGAAA
ACGATACAACAAGAACAGACGATTACACTAAATAAGGTGAATATACCAGC
TGGCACACAACATTCATCTAACGTTATATAGTCAGGGATATCAGAAAAGT
ACAAAGATTACGCTGGTGAAGTCTCTTTAGTTGCCCTACAAAAAGGAAAT
GGCGGTATTGGTCTTTCAATCGCCGATGGGGACGGGGACCATATCTACGT
CGTTGACGTCAAATCAGGCGGTGTCGCCGACGTTGACGGAAGGATACGTT
CGGGTGACGAAATACTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025162XLOC_025162Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041155-proteinTCONS_00041155-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041155-exon-sc0002723-1575043694:1238..1427TCONS_00041155-exon-sc0002723-1575043694:1238..1427Clytia hemisphaericaexon
TCONS_00041155-exon-sc0002723-1575043694:314..600TCONS_00041155-exon-sc0002723-1575043694:314..600Clytia hemisphaericaexon
TCONS_00041155-exon-sc0002723-1510915933:1238..1427TCONS_00041155-exon-sc0002723-1510915933:1238..1427Clytia hemisphaericaexon
TCONS_00041155-exon-sc0002723-1510915933:314..600TCONS_00041155-exon-sc0002723-1510915933:314..600Clytia hemisphaericaexon
TCONS_00041155-exon-sc0002723-1491911889:1238..1427TCONS_00041155-exon-sc0002723-1491911889:1238..1427Clytia hemisphaericaexon
TCONS_00041155-exon-sc0002723-1491911889:314..600TCONS_00041155-exon-sc0002723-1491911889:314..600Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002723supercontigsc0002723:314..1427 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17763	0.561345	1.18545	1.15333	4.26131	4.28834	9.08634	8.29554	8.94852	10.9557	13.7641	7.15286	11.1648	12.9293	8.04442	10.1663	20.7209	15.7415	13.6055	16.5711	17.2366	22.2044	3.30955	7.28976	5.9153	7.24738	6.81094	5.55414	1.12364	1.89431
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00041155 vs. Swiss-Prot (Human)
Match: INADL (InaD-like protein OS=Homo sapiens GN=PATJ PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 6.372e-16
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 2 
Query:    8 ISEKYKDYAGEVSLVALQKGNGGIGLSIADGDGDH----IYVVDVKSGGVADVDGRIRSGDEILEVNDVQVQGLSHSDASAILRKAEGTAKLVVGRPHD 292
            I ++Y D  GE+ ++ L+K   G+GLS+A G+ D     I+VV +   G A  DGR+R GDE+LE+N+  + G SH +ASAI++ A    KLV  R  D
Sbjct: 1226 IRQRYADLPGELHIIELEKDKNGLGLSLA-GNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNED 1323
The following BLAST results are available for this feature:
BLAST of TCONS_00041155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
INADL6.372e-1642.42InaD-like protein OS=Homo sapiens GN=PATJ PE=1 SV=... [more]
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