TCONS_00041155-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00041155-protein
Unique NameTCONS_00041155-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length144

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00041155-protein ID=TCONS_00041155-protein|Name=TCONS_00041155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
SGISEKYKDYAGEVSLVALQKGNGGIGLSIADGDGDHIYVVDVKSGGVAD
VDGRIRSGDEILEVNDVQVQGLSHSDASAILRKAEGTAKLVVGRPHDTSG
FKSLRLPAAGNTGTRRMKTIQQEQTITLNKVNIPAGTQHSSNVI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_025162XLOC_025162Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00041155TCONS_00041155Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 24..96
e-value: 1.5E-19
score: 81.0
IPR001478PDZ domainPFAMPF00595PDZcoord: 17..92
e-value: 9.0E-15
score: 54.7
IPR001478PDZ domainPROSITEPS50106PDZcoord: 16..96
score: 20.868
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 9..97
NoneNo IPR availableGENE3D2.30.42.10coord: 2..105
e-value: 1.3E-23
score: 82.6
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 16..92
e-value: 2.13676E-16
score: 68.7474

Blast
[Close]
BLAST of TCONS_00041155-protein vs. Swiss-Prot (Human)
Match: INADL (InaD-like protein OS=Homo sapiens GN=PATJ PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 6.776e-17
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 0 
Query:    3 ISEKYKDYAGEVSLVALQKGNGGIGLSIADGDGDH----IYVVDVKSGGVADVDGRIRSGDEILEVNDVQVQGLSHSDASAILRKAEGTAKLVVGRPHD 97
            I ++Y D  GE+ ++ L+K   G+GLS+A G+ D     I+VV +   G A  DGR+R GDE+LE+N+  + G SH +ASAI++ A    KLV  R  D
Sbjct: 1226 IRQRYADLPGELHIIELEKDKNGLGLSLA-GNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNED 1323
The following BLAST results are available for this feature:
BLAST of TCONS_00041155-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
INADL6.776e-1742.42InaD-like protein OS=Homo sapiens GN=PATJ PE=1 SV=... [more]
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