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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041151 ID=TCONS_00041151|Name=TCONS_00041151|organism=Clytia hemisphaerica|type=transcript|length=810bp
CTTTGAGAAGATCAACTTGCGCAACACTCCAAAACTTCTACTTGCAGATC
TTCTTATCAACAATTACCTATCCGAACCTGCACTGTCGCTAGTCAAGGGT
ATGACAGACATCAACTTGATTTGGAAACGACTCATCCACGCGTATGGCAA
CACAAAGGTTCTACTCACCAAGAAACTCAAGGAACTTAAAAGCCTCGACT
CTGTCTCCAAATCTAAGGATCCAACAAAGATTATGTCGTTCATCACTCAA
CTTATCAACACCATCAAGGACTTGGTCAGCTTGGCCAAGACTCACGATAT
AGAAAACAACCTCTATTTTGGTGATGGCTTGAACAACATCTACGCTCTAC
TCGGTGACGCAAGATGCACACGATGGTTTTCCTCAGTCTGCGACCTCGAC
ctgaatgaaaaacaacaatgGAGTCATCTCATCGACTTCCTCGAAAAGGA
GGTCAAAGTTCAGCAAAAACGCGCATTGGTCAATCTTCAAGCCACCAAAG
AAACCATCTCTTCCACGAGGGAGTGGAGGATATCACACACCATCACCAAA
TCCTCCACCATCAGCTGGACCATCAACTGGACCATCAACTGGATCATCTC
AATCAAAATGCTACTTCTGTGATTGCGATTGTAAAGACCAACACGTGCCA
ACCAAGGGGCCAGGAGGTTCCATGGTGATCCAATACTTTGCTTGTAAATG
TTTCACAGACAAAACTCCAGCTGAACGGTTATCAACACTTTGGAAGAAAG
GACTTTGTCACCAATGCCTCCTACCAGGGGCAAAACGTCAAGACTTGAAG
CATAAGAACG Run BLAST on NCBI protein sequence of TCONS_00041151-protein >TCONS_00041151-protein ID=TCONS_00041151-protein|Name=TCONS_00041151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
FEKINLRNTPKLLLADLLINNYLSEPALSLVKGMTDINLIWKRLIHAYGN
TKVLLTKKLKELKSLDSVSKSKDPTKIMSFITQLINTIKDLVSLAKTHDI
ENNLYFGDGLNNIYALLGDARCTRWFSSVCDLDLNEKQQWSHLIDFLEKE
VKVQQKRALVNLQATKETISSTREWRISHTITKSSTISWTINWTINWIIS
IKMLLL Run BLAST on NCBI transcript from alignment at sc0002722:8749..9558 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041151 ID=TCONS_00041151|Name=TCONS_00041151|organism=Clytia hemisphaerica|type=transcript|length=810bp|location=Sequence derived from alignment at sc0002722:8749..9558 (Clytia hemisphaerica)
CGTTCTTATGCTTCAAGTCTTGACGTTTTGCCCCTGGTAGGAGGCATTGG
TGACAAAGTCCTTTCTTCCAAAGTGTTGATAACCGTTCAGCTGGAGTTTT
GTCTGTGAAACATTTACAAGCAAAGTATTGGATCACCATGGAACCTCCTG
GCCCCTTGGTTGGCACGTGTTGGTCTTTACAATCGCAATCACAGAAGTAG
CATTTTGATTGAGATGATCCAGTTGATGGTCCAGTTGATGGTCCAGCTGA
TGGTGGAGGATTTGGTGATGGTGTGTGATATCCTCCACTCCCTCGTGGAA
GAGATGGTTTCTTTGGTGGCTTGAAGATTGACCAATGCGCGTTTTTGCTG
AACTTTGACCTCCTTTTCGAGGAAGTCGATGAGATGACTCcattgttgtt
tttcattcagGTCGAGGTCGCAGACTGAGGAAAACCATCGTGTGCATCTT
GCGTCACCGAGTAGAGCGTAGATGTTGTTCAAGCCATCACCAAAATAGAG
GTTGTTTTCTATATCGTGAGTCTTGGCCAAGCTGACCAAGTCCTTGATGG
TGTTGATAAGTTGAGTGATGAACGACATAATCTTTGTTGGATCCTTAGAT
TTGGAGACAGAGTCGAGGCTTTTAAGTTCCTTGAGTTTCTTGGTGAGTAG
AACCTTTGTGTTGCCATACGCGTGGATGAGTCGTTTCCAAATCAAGTTGA
TGTCTGTCATACCCTTGACTAGCGACAGTGCAGGTTCGGATAGGTAATTG
TTGATAAGAAGATCTGCAAGTAGAAGTTTTGGAGTGTTGCGCAAGTTGAT
CTTCTCAAAG Coding sequence (CDS) from alignment at sc0002722:8749..9558 >TCONS_00041151 ID=TCONS_00041151|Name=TCONS_00041151|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at sc0002722:8749..9558 (Clytia hemisphaerica)
TCACAGAAGTAGCATTTTGATTGAGATGATCCAGTTGATGGTCCAGTTGA
TGGTCCAGCTGATGGTGGAGGATTTGGTGATGGTGTGTGATATCCTCCAC
TCCCTCGTGGAAGAGATGGTTTCTTTGGTGGCTTGAAGATTGACCAATGC
GCGTTTTTGCTGAACTTTGACCTCCTTTTCGAGGAAGTCGATGAGATGAC
TCcattgttgtttttcattcagGTCGAGGTCGCAGACTGAGGAAAACCAT
CGTGTGCATCTTGCGTCACCGAGTAGAGCGTAGATGTTGTTCAAGCCATC
ACCAAAATAGAGGTTGTTTTCTATATCGTGAGTCTTGGCCAAGCTGACCA
AGTCCTTGATGGTGTTGATAAGTTGAGTGATGAACGACATAATCTTTGTT
GGATCCTTAGATTTGGAGACAGAGTCGAGGCTTTTAAGTTCCTTGAGTTT
CTTGGTGAGTAGAACCTTTGTGTTGCCATACGCGTGGATGAGTCGTTTCC
AAATCAAGTTGATGTCTGTCATACCCTTGACTAGCGACAGTGCAGGTTCG
GATAGGTAATTGTTGATAAGAAGATCTGCAAGTAGAAGTTTTGGAGTGTT
GCGCAAGTTGATCTTCTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041151-exon-sc0002722-1491911889:8749..9558 | TCONS_00041151-exon-sc0002722-1491911889:8749..9558 | Clytia hemisphaerica | exon |
| TCONS_00041151-exon-sc0002722-1510915933:8749..9558 | TCONS_00041151-exon-sc0002722-1510915933:8749..9558 | Clytia hemisphaerica | exon |
| TCONS_00041151-exon-sc0002722-1575043694:8749..9558 | TCONS_00041151-exon-sc0002722-1575043694:8749..9558 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002722 | supercontig | sc0002722:8749..9558 . |
Blast
The following BLAST results are available for this feature:
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