TCONS_00041124 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041124
Unique NameTCONS_00041124
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041124 ID=TCONS_00041124|Name=TCONS_00041124|organism=Clytia hemisphaerica|type=transcript|length=452bp
aaaatattttggaaaatgaaagtgaaaaaaaagattcaatgcttcaaaat
agcaaaaacttttttaaataccaCTTCAATAATGCAGAAATATTATCATC
GAGGACTTTGTTAGTGTTTATGTACTTACCGAAACATAAAAGCCACAAAT
GAAATGAGCTTTTTTCAAGCATCAGAAATATATATCCGAGAATTCCATCA
CAAAAATGAAACAACAAAAACACATAATGAACTGCCGAAGTGTGTTTTGG
GTATCGAACAAATGAAGGTATGATAGCAAATCCAAAAATGATATAACATG
CCACACCGAACGTACAAACATTACTTAAATATTCAACCATATAAATCATT
TTGACGCAATAACCTCGAACGTAAAGAAAACTTTTCCactaaaagttatt
ttttacaTTGCTCTTGCTTTAATCGTTTCTAACAAACCTCGCTTTtgcaa
at
Run BLAST on NCBI

protein sequence of TCONS_00041124-protein

>TCONS_00041124-protein ID=TCONS_00041124-protein|Name=TCONS_00041124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MIYMVEYLSNVCTFGVACYIIFGFAIIPSFVRYPKHTSAVHYVFLLFHFC
DGILGYIFLMLEKSSFHLWLLCFGKYINTNKVLDDNISALLKWYLKKFLL
F
Run BLAST on NCBI

transcript from alignment at sc0002713:17430..17881

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041124 ID=TCONS_00041124|Name=TCONS_00041124|organism=Clytia hemisphaerica|type=transcript|length=452bp|location=Sequence derived from alignment at sc0002713:17430..17881 (Clytia hemisphaerica)
atttgcaAAAGCGAGGTTTGTTAGAAACGATTAAAGCAAGAGCAAtgtaa
aaaataacttttagtGGAAAAGTTTTCTTTACGTTCGAGGTTATTGCGTC
AAAATGATTTATATGGTTGAATATTTAAGTAATGTTTGTACGTTCGGTGT
GGCATGTTATATCATTTTTGGATTTGCTATCATACCTTCATTTGTTCGAT
ACCCAAAACACACTTCGGCAGTTCATTATGTGTTTTTGTTGTTTCATTTT
TGTGATGGAATTCTCGGATATATATTTCTGATGCTTGAAAAAAGCTCATT
TCATTTGTGGCTTTTATGTTTCGGTAAGTACATAAACACTAACAAAGTCC
TCGATGATAATATTTCTGCATTATTGAAGtggtatttaaaaaagtttttg
ctattttgaagcattgaatcttttttttcactttcattttccaaaatatt
tt

Coding sequence (CDS) from alignment at sc0002713:17430..17881

>TCONS_00041124 ID=TCONS_00041124|Name=TCONS_00041124|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0002713:17430..17881 (Clytia hemisphaerica)
ATGATTTATATGGTTGAATATTTAAGTAATGTTTGTACGTTCGGTGTGGC
ATGTTATATCATTTTTGGATTTGCTATCATACCTTCATTTGTTCGATACC
CAAAACACACTTCGGCAGTTCATTATGTGTTTTTGTTGTTTCATTTTTGT
GATGGAATTCTCGGATATATATTTCTGATGCTTGAAAAAAGCTCATTTCA
TTTGTGGCTTTTATGTTTCGGTAAGTACATAAACACTAACAAAGTCCTCG
ATGATAATATTTCTGCATTATTGAAGtggtatttaaaaaagtttttgcta
ttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025133XLOC_025133Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041124-proteinTCONS_00041124-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041124-exon-sc0002713-1491911889:17430..17881TCONS_00041124-exon-sc0002713-1491911889:17430..17881Clytia hemisphaericaexon
TCONS_00041124-exon-sc0002713-1510915933:17430..17881TCONS_00041124-exon-sc0002713-1510915933:17430..17881Clytia hemisphaericaexon
TCONS_00041124-exon-sc0002713-1575043694:17430..17881TCONS_00041124-exon-sc0002713-1575043694:17430..17881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002713supercontigsc0002713:17430..17881 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.437997	0.569488	0.991845	0.323455	0.393775	0.46675	0.410919	0.175727	0.492122	0.304786	0	0	1.65069	1.21006	1.49225	1.60142	0.876807	1.12337	2.7936	0.812029	1.83508	1.85903	2.67839	1.21752	0.62701	0.559592	1.40135	5.55495	1.45843	1.1557
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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