TCONS_00041117 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041117
Unique NameTCONS_00041117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041117 ID=TCONS_00041117|Name=TCONS_00041117|organism=Clytia hemisphaerica|type=transcript|length=883bp
AATTTCATCCCTTCCCAGAAGAAATACATGATTCAAATAAGGTCAAGAAG
TcttactttgaaaaagtaatggAAAGTTTCTGTGGTGAATTTGTTTTGCA
AAGGAATTTTTACAATGAATATGATCATACTAGAAATTATGGTATGATGA
CGATCTATCTCACCGTTCTCCTTCTCAACATGAAAGATGCATGCAATGAG
GGTGACGGTGACAGAAATCTGATTCATCAGAAGATTTTACTATCTGTTTT
CAAGTCTACAGATTCCCACAGCAAATATGCCCAAGAGATGTTTTATGCCT
TGCTGTAAACAGAGTGTCTTTTAACCCCAAGGCTATCTCAAGAATTTAAA
TGGGGGTATTTTTCTAATTGGCGTGGAGGTAAAGGAAGAAACATGGAAGA
TGATATGACCCAGGAGATATCTAATAGACTTTCGAAAGACATAGCTAAGA
GAATGGGTGCAAATAAAACAGTTGAGTCCATATAAAAAATGTCCAGAGCT
ACTAATGGCATCAAGGctataattcaaaattttgatgagaaaacTGATAT
GACACCAAGATCAGTTCAGCACACCCACAGTCACACACTTGAAGATGAGA
TAGAAATGATTAAAGATATCCAAACAATTAACCCGTTTAGCTACGAACAG
AACCGTGCTTTCAAATGTTTCGAGAATATCAAGCGTTCTCCATTACGTTA
TTTAAATGTTGCTGATTTTCACAAATGGTTGAAAAAATTGGTAGCTGATG
TAGCCCCTGCTCAAACGTTTCAATaatcgaaatattttttgtatatgtAA
ACTTTTGTACTCTTTTTTACATCTTGCTGTTTTTTAGATGACATTTTTTA
TATccttgtttaaaaaaaagtgttcTAGCTTac
Run BLAST on NCBI

protein sequence of TCONS_00041117-protein

>TCONS_00041117-protein ID=TCONS_00041117-protein|Name=TCONS_00041117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
FHPFPEEIHDSNKVKKSYFEKVMESFCGEFVLQRNFYNEYDHTRNYGMMT
IYLTVLLLNMKDACNEGDGDRNLIHQKILLSVFKSTDSHSKYAQEMFYAL
L
Run BLAST on NCBI

transcript from alignment at sc0002711:17245..18127

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041117 ID=TCONS_00041117|Name=TCONS_00041117|organism=Clytia hemisphaerica|type=transcript|length=883bp|location=Sequence derived from alignment at sc0002711:17245..18127 (Clytia hemisphaerica)
gtAAGCTAgaacacttttttttaaacaaggATATAAAAAATGTCATCTAA
AAAACAGCAAGATGTAAAAAAGAGTACAAAAGTTTacatatacaaaaaat
atttcgattATTGAAACGTTTGAGCAGGGGCTACATCAGCTACCAATTTT
TTCAACCATTTGTGAAAATCAGCAACATTTAAATAACGTAATGGAGAACG
CTTGATATTCTCGAAACATTTGAAAGCACGGTTCTGTTCGTAGCTAAACG
GGTTAATTGTTTGGATATCTTTAATCATTTCTATCTCATCTTCAAGTGTG
TGACTGTGGGTGTGCTGAACTGATCTTGGTGTCATATCAgttttctcatc
aaaattttgaattatagCCTTGATGCCATTAGTAGCTCTGGACATTTTTT
ATATGGACTCAACTGTTTTATTTGCACCCATTCTCTTAGCTATGTCTTTC
GAAAGTCTATTAGATATCTCCTGGGTCATATCATCTTCCATGTTTCTTCC
TTTACCTCCACGCCAATTAGAAAAATACCCCCATTTAAATTCTTGAGATA
GCCTTGGGGTTAAAAGACACTCTGTTTACAGCAAGGCATAAAACATCTCT
TGGGCATATTTGCTGTGGGAATCTGTAGACTTGAAAACAGATAGTAAAAT
CTTCTGATGAATCAGATTTCTGTCACCGTCACCCTCATTGCATGCATCTT
TCATGTTGAGAAGGAGAACGGTGAGATAGATCGTCATCATACCATAATTT
CTAGTATGATCATATTCATTGTAAAAATTCCTTTGCAAAACAAATTCACC
ACAGAAACTTTccattactttttcaaagtaagACTTCTTGACCTTATTTG
AATCATGTATTTCTTCTGGGAAGGGATGAAATT

Coding sequence (CDS) from alignment at sc0002711:17245..18127

>TCONS_00041117 ID=TCONS_00041117|Name=TCONS_00041117|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0002711:17245..18127 (Clytia hemisphaerica)
TTACAGCAAGGCATAAAACATCTCTTGGGCATATTTGCTGTGGGAATCTG
TAGACTTGAAAACAGATAGTAAAATCTTCTGATGAATCAGATTTCTGTCA
CCGTCACCCTCATTGCATGCATCTTTCATGTTGAGAAGGAGAACGGTGAG
ATAGATCGTCATCATACCATAATTTCTAGTATGATCATATTCATTGTAAA
AATTCCTTTGCAAAACAAATTCACCACAGAAACTTTccattactttttca
aagtaagACTTCTTGACCTTATTTGAATCATGTATTTCTTCTGGGAAGGG
ATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025126XLOC_025126Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041117-proteinTCONS_00041117-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041117-exon-sc0002711-1491911889:17245..18127TCONS_00041117-exon-sc0002711-1491911889:17245..18127Clytia hemisphaericaexon
TCONS_00041117-exon-sc0002711-1510915933:17245..18127TCONS_00041117-exon-sc0002711-1510915933:17245..18127Clytia hemisphaericaexon
TCONS_00041117-exon-sc0002711-1575043694:17245..18127TCONS_00041117-exon-sc0002711-1575043694:17245..18127Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002711supercontigsc0002711:17245..18127 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.105275	0	0	0.116617	0.618448	0.145205	0.215925	0.59893	0.664701	0.907936	0.749846	0.609081	1.12221	0.258768	0.576639	0.56898	0.24428	0.561022	0.530575	1.22974	0.300484	0.548993	0.359101	0.654757	0.30424	0.267539	2.85374	1.77989	1.69698	2.13771
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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