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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041111 ID=TCONS_00041111|Name=TCONS_00041111|organism=Clytia hemisphaerica|type=transcript|length=1745bp
AAAAGACGTTAAAGAAGAAGTCAAAAACTTGGTCAAACAAAACCCACCAT
CTCATCCAACAATAAAATGGATTTTCGGATTAGTTCTATCGGAGCTCGGT
GAAAAAGGAGAACACTCATTCTTTCGTAAACTCTATTCTCTCAAAGACGA
CCCTGTTCTTCAAGATACTGTGATTCTCAGTTCCATCAGTTTCCTCACTA
ATGTCCAAAAGAAAATGCATCAGGAGATTGACGTCCTTCTTTTCTCGTGG
ACCAAGAAATTAATCATAGGCGTAGAAATCAAACGGACACTGACTATAAA
AGCTTTTGACCAGTTGGATAAATACCATAAATTGATAGAAGAGAGATTGA
GTGATCAATTGGGACAAGGCTGGACGTATCATCCAGTCGTTCTGGTTGAA
AAGGACGACCTTTCTTTTAACAATCAACATTACATTGACCAAGAAACAGA
TTTGAAATGTTGGTTATCCAACTTGTTGGCAAATTATTCGACCGTTCCCT
ATGGAATACCTTTCATCCCAGCAGTAAATCAAGTTAAAGACCTCCTAAGA
ATCGTTGTGTTTGCAATTCATGCTTCAAAAACAGCACCCATTACGACATC
GAACTGGGTGGAGTATATCTCGCAAGCCATCGATACCGTCTGCACTACTG
ACAACATACTCTTTTACAGTCAGCGTCAACTTCCCATCATGAAGACAGAC
ACTTCTGAATTCAATAAGATCCTCTTTTATGCCCCTTACGGATGCGGCAA
GTCTTTCATCCTTCAGGAGAAAGCAAAACAATTGAGTGAAATGACGGAAT
ACAAAGGACGTGTTATGTATGTCATTCAGAGGGAATATCATTTAGAAACC
CTTCTTGAGTGGAGATTGAAAGACGAATTGGAAAAAGAACATGGAGTTGA
CGTCTATGGATACAGAAGATTCGAAGCCTATATACATATTGAAAAGCTGA
TGAAAAAGATTCAAACGAAAAACATCAACGCATTATTCATCGATGAGTGT
GACATTACCGGTAATCAATTGAAAGAAATGATAATGAAAGTCAAACAACA
CGTTAAGGTGATTTGGATTGCATCAAACGGATCGGGTCATCGGCATTTTT
TATCAGGTGAAGAAAATTTACTCTTTACCAACGTTAATACTTTATCAGGT
CTTGGAGATCTTTCGCCGTATGACGATTTCATGAAATATGAACTTGACGT
GAATTTAAGAAACTGTAAAAGTATCGTTACAGAGGCTTTACGTCTTGAAG
AAAGAGAAAGTTCGGGATATAAAGAGGGTTTAGTACGTCCACCACAAAAC
CACCCTGACGGAGAGAAACCCTACCATTCCAAATCATTTGAAGATGTCAT
CACAAAAATGAGAAAGATCACGAACGATGGGGTGCTAGTGATATCTGATA
TTCATTACGTGGGGGATGATTATCGAACATTGAGCAAGTTGCAATTGAAA
TGGAAAATGTATGGAGAATATCTAAACCGTTTCAAAAAAGGTGAAAGTCC
ATATCATCATCTTGTAGATGGAAACATTTTATTGATGAGGGACTATGGAT
TAATTTCCGGATTCGAGTGGAAGAACATCATCATTATCAAGAAAGGAACC
TTCGGTGCTGTTGATTACCATCCATGTAATTTGATCATGAGATGTACCAC
GAATCTCATGATTGTTGACGTAGAAGAATTTTCTTCAGATGAAACCGATA
TAGTGAAGATTCTTTAGATGATTAAGTTTTAAAGTTTTACCAAAA Run BLAST on NCBI protein sequence of TCONS_00041111-protein >TCONS_00041111-protein ID=TCONS_00041111-protein|Name=TCONS_00041111-protein|organism=Clytia hemisphaerica|type=polypeptide|length=571bp
KDVKEEVKNLVKQNPPSHPTIKWIFGLVLSELGEKGEHSFFRKLYSLKDD
PVLQDTVILSSISFLTNVQKKMHQEIDVLLFSWTKKLIIGVEIKRTLTIK
AFDQLDKYHKLIEERLSDQLGQGWTYHPVVLVEKDDLSFNNQHYIDQETD
LKCWLSNLLANYSTVPYGIPFIPAVNQVKDLLRIVVFAIHASKTAPITTS
NWVEYISQAIDTVCTTDNILFYSQRQLPIMKTDTSEFNKILFYAPYGCGK
SFILQEKAKQLSEMTEYKGRVMYVIQREYHLETLLEWRLKDELEKEHGVD
VYGYRRFEAYIHIEKLMKKIQTKNINALFIDECDITGNQLKEMIMKVKQH
VKVIWIASNGSGHRHFLSGEENLLFTNVNTLSGLGDLSPYDDFMKYELDV
NLRNCKSIVTEALRLEERESSGYKEGLVRPPQNHPDGEKPYHSKSFEDVI
TKMRKITNDGVLVISDIHYVGDDYRTLSKLQLKWKMYGEYLNRFKKGESP
YHHLVDGNILLMRDYGLISGFEWKNIIIIKKGTFGAVDYHPCNLIMRCTT
NLMIVDVEEFSSDETDIVKIL Run BLAST on NCBI transcript from alignment at sc0002709:4201..6382+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041111 ID=TCONS_00041111|Name=TCONS_00041111|organism=Clytia hemisphaerica|type=transcript|length=2182bp|location=Sequence derived from alignment at sc0002709:4201..6382+ (Clytia hemisphaerica)
AAAAGACGTTAAAGAAGAAGTCAAAAACTTGGTCAAACAAAACCCACCAT
CTCATCCAACAATAAAATGGATTTTCGGATTAGTTCTATCGGAGCTCGGT
GAAAAAGGAGAACACTCATTCTTTCGTAAACTCTATTCTCTCAAAGACGA
CCCTGTTCTTCAAGATACTGTGATTCTCAGTTCCATCAGTTTCCTCACTA
ATGTCCAAAAGAAAATGCATCAGGAGATTGACGTCCTTCTTTTCTCGTGG
ACCAAGAAATTAATCATAGGCGTAGAAATCAAACGGACACTGACTATAAA
AGCTTTTGACCAGTTGGATAAATACCATAAATTGATAGAAGAGAGATTGA
GTGATCAATTGGGACAAGGCTGGACGTATCATCCAGTCGTTCTGGTTGAA
AAGGACGACCTTTCTTTTAACAATCAACATTACATTGACCAAGAAACAGA
TTTGAAATGTTGGTTATCCAACTTGTTGGCAAATTATTCGACCGTTCCCT
ATGGAATACCTTTCATCCCAGCAGTAAATCAAGTTAAAGACCTCCTAAGA
ATCGTTGTGTTTGCAATTCATGCTTCAAAAACAGCACCCATTACGACATC
GAACTGGGTGGAGTATATCTCGCAAGCCATCGATACCGTCTGCACTACTG
ACAACATACTCTTTTACAGTCAGCGTCAACTTCCCATCATGAAGACAGAC
ACTTCTGAATTCAATAAGATCCTCTTTTATGCCCCTTACGGATGCGGCAA
GTCTTTCATCCTTCAGGAGAAAGCAAAACAATTGAGTGAAATGACGGAAT
ACAAAGGACGTGTTATGTATGTCATTCAGAGGGAATATCATTTAGAAACC
CTTCTTGAGTGGAGATTGAAAGACGAATTGGAAAAAGAACATGGAGTTGA
CGTCTATGGATACAGAAGATTCGAAGCCTATATAGTAAGTTGCATTTTGA
ATCTAATTTTGAATCTTTTTGAAATCTAACCAAATAAAAAAGATATAAAA
AAATTCTAGTTTTTAAGACTTTAACGTAGGTTTTCAATGATTCATAATTT
GCTTTTTCCATCATCTTTTTACAAAAAAAAAAACACCGTTCAAATTTGCA
TGCTGCAAGAATGAGAAAAATTTAACTGTTTCTATATGAGCATACGTGAA
CATTTTAATCAAAAACTTATAAACTACATAATAGTGCACTGTTGTGATCT
TCTTCTCCTAATGTTACTAATATTGTTAAAAAAAGTCAGAAACGCTTGAA
TGTTCGATTTGGTCGTGAGCTTTTCCGTGGCAGATTTTCCGTAGATTATT
TGCAACCTCGCATTATTCCATATTTTTGAAGAGATTTTGTTAAAATAAAA
TTATTCTTTTTTTACAAACAGCATATTGAAAAGCTGATGAAAAAGATTCA
AACGAAAAACATCAACGCATTATTCATCGATGAGTGTGACATTACCGGTA
ATCAATTGAAAGAAATGATAATGAAAGTCAAACAACACGTTAAGGTGATT
TGGATTGCATCAAACGGATCGGGTCATCGGCATTTTTTATCAGGTGAAGA
AAATTTACTCTTTACCAACGTTAATACTTTATCAGGTCTTGGAGATCTTT
CGCCGTATGACGATTTCATGAAATATGAACTTGACGTGAATTTAAGAAAC
TGTAAAAGTATCGTTACAGAGGCTTTACGTCTTGAAGAAAGAGAAAGTTC
GGGATATAAAGAGGGTTTAGTACGTCCACCACAAAACCACCCTGACGGAG
AGAAACCCTACCATTCCAAATCATTTGAAGATGTCATCACAAAAATGAGA
AAGATCACGAACGATGGGGTGCTAGTGATATCTGATATTCATTACGTGGG
GGATGATTATCGAACATTGAGCAAGTTGCAATTGAAATGGAAAATGTATG
GAGAATATCTAAACCGTTTCAAAAAAGGTGAAAGTCCATATCATCATCTT
GTAGATGGAAACATTTTATTGATGAGGGACTATGGATTAATTTCCGGATT
CGAGTGGAAGAACATCATCATTATCAAGAAAGGAACCTTCGGTGCTGTTG
ATTACCATCCATGTAATTTGATCATGAGATGTACCACGAATCTCATGATT
GTTGACGTAGAAGAATTTTCTTCAGATGAAACCGATATAGTGAAGATTCT
TTAGATGATTAAGTTTTAAAGTTTTACCAAAA Coding sequence (CDS) from alignment at sc0002709:4201..6382+ >TCONS_00041111 ID=TCONS_00041111|Name=TCONS_00041111|organism=Clytia hemisphaerica|type=CDS|length=3432bp|location=Sequence derived from alignment at sc0002709:4201..6382+ (Clytia hemisphaerica)
AAAGACGTTAAAGAAGAAGTCAAAAACTTGGTCAAACAAAACCCACCATC
TCATCCAACAATAAAATGGATTTTCGGATTAGTTCTATCGGAGCTCGGTG
AAAAAGGAGAACACTCATTCTTTCGTAAACTCTATTCTCTCAAAGACGAC
CCTGTTCTTCAAGATACTGTGATTCTCAGTTCCATCAGTTTCCTCACTAA
TGTCCAAAAGAAAATGCATCAGGAGATTGACGTCCTTCTTTTCTCGTGGA
CCAAGAAATTAATCATAGGCGTAGAAATCAAACGGACACTGACTATAAAA
GCTTTTGACCAGTTGGATAAATACCATAAATTGATAGAAGAGAGATTGAG
TGATCAATTGGGACAAGGCTGGACGTATCATCCAGTCGTTCTGGTTGAAA
AGGACGACCTTTCTTTTAACAATCAACATTACATTGACCAAGAAACAGAT
TTGAAATGTTGGTTATCCAACTTGTTGGCAAATTATTCGACCGTTCCCTA
TGGAATACCTTTCATCCCAGCAGTAAATCAAGTTAAAGACCTCCTAAGAA
TCGTTGTGTTTGCAATTCATGCTTCAAAAACAGCACCCATTACGACATCG
AACTGGGTGGAGTATATCTCGCAAGCCATCGATACCGTCTGCACTACTGA
CAACATACTCTTTTACAGTCAGCGTCAACTTCCCATCATGAAGACAGACA
CTTCTGAATTCAATAAGATCCTCTTTTATGCCCCTTACGGATGCGGCAAG
TCTTTCATCCTTCAGGAGAAAGCAAAACAATTGAGTGAAATGACGGAATA
CAAAGGACGTGTTATGTATGTCATTCAGAGGGAATATCATTTAGAAACCC
TTCTTGAGTGGAGATTGAAAGACGAATTGGAAAAAGAACATGGAGTTGAC
GTCTATGGATACAGAAGATTCGAAGCCTATATACATATTGAAAAGCTGAT
GAAAAAGATTCAAACGAAAAACATCAACGCATTATTCATCGATGAGTGTG
ACATTACCGGTAATCAATTGAAAGAAATGATAATGAAAGTCAAACAACAC
GTTAAGGTGATTTGGATTGCATCAAACGGATCGGGTCATCGGCATTTTTT
ATCAGGTGAAGAAAATTTACTCTTTACCAACGTTAATACTTTATCAGGTC
TTGGAGATCTTTCGCCGTATGACGATTTCATGAAATATGAACTTGACGTG
AATTTAAGAAACTGTAAAAGTATCGTTACAGAGGCTTTACGTCTTGAAGA
AAGAGAAAGTTCGGGATATAAAGAGGGTTTAGTACGTCCACCACAAAACC
ACCCTGACGGAGAGAAACCCTACCATTCCAAATCATTTGAAGATGTCATC
ACAAAAATGAGAAAGATCACGAACGATGGGGTGCTAGTGATATCTGATAT
TCATTACGTGGGGGATGATTATCGAACATTGAGCAAGTTGCAATTGAAAT
GGAAAATGTATGGAGAATATCTAAACCGTTTCAAAAAAGGTGAAAGTCCA
TATCATCATCTTGTAGATGGAAACATTTTATTGATGAGGGACTATGGATT
AATTTCCGGATTCGAGTGGAAGAACATCATCATTATCAAGAAAGGAACCT
TCGGTGCTGTTGATTACCATCCATGTAATTTGATCATGAGATGTACCACG
AATCTCATGATTGTTGACGTAGAAGAATTTTCTTCAGATGAAACCGATAT
AGTGAAGATTCTTTAGAAAGACGTTAAAGAAGAAGTCAAAAACTTGGTCA
AACAAAACCCACCATCTCATCCAACAATAAAATGGATTTTCGGATTAGTT
CTATCGGAGCTCGGTGAAAAAGGAGAACACTCATTCTTTCGTAAACTCTA
TTCTCTCAAAGACGACCCTGTTCTTCAAGATACTGTGATTCTCAGTTCCA
TCAGTTTCCTCACTAATGTCCAAAAGAAAATGCATCAGGAGATTGACGTC
CTTCTTTTCTCGTGGACCAAGAAATTAATCATAGGCGTAGAAATCAAACG
GACACTGACTATAAAAGCTTTTGACCAGTTGGATAAATACCATAAATTGA
TAGAAGAGAGATTGAGTGATCAATTGGGACAAGGCTGGACGTATCATCCA
GTCGTTCTGGTTGAAAAGGACGACCTTTCTTTTAACAATCAACATTACAT
TGACCAAGAAACAGATTTGAAATGTTGGTTATCCAACTTGTTGGCAAATT
ATTCGACCGTTCCCTATGGAATACCTTTCATCCCAGCAGTAAATCAAGTT
AAAGACCTCCTAAGAATCGTTGTGTTTGCAATTCATGCTTCAAAAACAGC
ACCCATTACGACATCGAACTGGGTGGAGTATATCTCGCAAGCCATCGATA
CCGTCTGCACTACTGACAACATACTCTTTTACAGTCAGCGTCAACTTCCC
ATCATGAAGACAGACACTTCTGAATTCAATAAGATCCTCTTTTATGCCCC
TTACGGATGCGGCAAGTCTTTCATCCTTCAGGAGAAAGCAAAACAATTGA
GTGAAATGACGGAATACAAAGGACGTGTTATGTATGTCATTCAGAGGGAA
TATCATTTAGAAACCCTTCTTGAGTGGAGATTGAAAGACGAATTGGAAAA
AGAACATGGAGTTGACGTCTATGGATACAGAAGATTCGAAGCCTATATAC
ATATTGAAAAGCTGATGAAAAAGATTCAAACGAAAAACATCAACGCATTA
TTCATCGATGAGTGTGACATTACCGGTAATCAATTGAAAGAAATGATAAT
GAAAGTCAAACAACACGTTAAGGTGATTTGGATTGCATCAAACGGATCGG
GTCATCGGCATTTTTTATCAGGTGAAGAAAATTTACTCTTTACCAACGTT
AATACTTTATCAGGTCTTGGAGATCTTTCGCCGTATGACGATTTCATGAA
ATATGAACTTGACGTGAATTTAAGAAACTGTAAAAGTATCGTTACAGAGG
CTTTACGTCTTGAAGAAAGAGAAAGTTCGGGATATAAAGAGGGTTTAGTA
CGTCCACCACAAAACCACCCTGACGGAGAGAAACCCTACCATTCCAAATC
ATTTGAAGATGTCATCACAAAAATGAGAAAGATCACGAACGATGGGGTGC
TAGTGATATCTGATATTCATTACGTGGGGGATGATTATCGAACATTGAGC
AAGTTGCAATTGAAATGGAAAATGTATGGAGAATATCTAAACCGTTTCAA
AAAAGGTGAAAGTCCATATCATCATCTTGTAGATGGAAACATTTTATTGA
TGAGGGACTATGGATTAATTTCCGGATTCGAGTGGAAGAACATCATCATT
ATCAAGAAAGGAACCTTCGGTGCTGTTGATTACCATCCATGTAATTTGAT
CATGAGATGTACCACGAATCTCATGATTGTTGACGTAGAAGAATTTTCTT
CAGATGAAACCGATATAGTGAAGATTCTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041111-exon-sc0002709-1491911889:4201..5134 | TCONS_00041111-exon-sc0002709-1491911889:4201..5134 | Clytia hemisphaerica | exon |
| TCONS_00041111-exon-sc0002709-1510915933:4201..5134 | TCONS_00041111-exon-sc0002709-1510915933:4201..5134 | Clytia hemisphaerica | exon |
| TCONS_00041111-exon-sc0002709-1575043694:4201..5134 | TCONS_00041111-exon-sc0002709-1575043694:4201..5134 | Clytia hemisphaerica | exon |
| TCONS_00041111-exon-sc0002709-1491911889:5572..6382 | TCONS_00041111-exon-sc0002709-1491911889:5572..6382 | Clytia hemisphaerica | exon |
| TCONS_00041111-exon-sc0002709-1510915933:5572..6382 | TCONS_00041111-exon-sc0002709-1510915933:5572..6382 | Clytia hemisphaerica | exon |
| TCONS_00041111-exon-sc0002709-1575043694:5572..6382 | TCONS_00041111-exon-sc0002709-1575043694:5572..6382 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002709 | supercontig | sc0002709:4201..6382 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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