|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041109 ID=TCONS_00041109|Name=TCONS_00041109|organism=Clytia hemisphaerica|type=transcript|length=820bp
TTCCAATCCTTTTTGCTCTCTTATACGATGGGTATTccaatattgaacaa
aaatatcgGCTTCCCTTTGAACTATCGGAATGTAAATAAAAGCAAGCATT
TTACGATCATCGATAGAGTGAGGATTATAACGATTACTAACCAAGAGGGC
TTTTAACTGTTCCTTAAAATATAACTCAAGGCGTTGATGCAAATCTTTCC
ACCATCTTTCAATTTTGTTGGTGGGGGACTTGCCATAAATCACAGAATTA
TTCGAGTTTGCGAAGTAATCAGTCAACTTATCCGTTAAGTAAGCATGTAT
TGCGGCCATTTTTCCCGTTTCAGTCCCTTTATCAATTCTTAAATACCGAG
GCATGCGATTGTACTCgtacaaaaactcaaaatatttccttccaaTAACA
AATGGGTCAGAATTAGAATAAACCACACTAAGAAAAAGGATCTTTCGAGA
GAAAGTATCTAAGCATCCGTATATACCAATAGGAAAAGTCCAATTCTGGT
AACCACATAACTTATCATGGCCATCCAAAGAAGCAACATTCCATGGACCA
TCGCAGACGAAAGGAGTTTTCCTaggtttttgtttgttttcgagCCTTCG
CTGCTCAACACCTTCAGGGTCTTCAGCTCCGAGGACAGCATGGACGAGAT
GACGTGGAACTTTGATACCATGCTGAATGCGCAGTTTCTGATTCATTGCA
CGGTACCCTAATAGTTGTCCTGGTCCATTCAGTTCTTCTCGGACGGCTTC
TTGAACAGATTCAAGCGTTGTGTCGTAGTTAATATACCATATTTGGAAAT
ATCGCAATCTTCTATCTAAT Run BLAST on NCBI protein sequence of TCONS_00041109-protein >TCONS_00041109-protein ID=TCONS_00041109-protein|Name=TCONS_00041109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
LDRRLRYFQIWYINYDTTLESVQEAVREELNGPGQLLGYRAMNQKLRIQH
GIKVPRHLVHAVLGAEDPEGVEQRRLENKQKPRKTPFVCDGPWNVASLDG
HDKLCGYQNWTFPIGIYGCLDTFSRKILFLSVVYSNSDPFVIGRKYFEFL
YEYNRMPRYLRIDKGTETGKMAAIHAYLTDKLTDYFANSNNSVIYGKSPT
NKIERWWKDLHQRLELYFKEQLKALLVSNRYNPHSIDDRKMLAFIYIPIV
QREADIFVQYWNTHRIREQKGLE Run BLAST on NCBI transcript from alignment at sc0002707:5692..6511 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041109 ID=TCONS_00041109|Name=TCONS_00041109|organism=Clytia hemisphaerica|type=transcript|length=820bp|location=Sequence derived from alignment at sc0002707:5692..6511 (Clytia hemisphaerica)
ATTAGATAGAAGATTGCGATATTTCCAAATATGGTATATTAACTACGACA
CAACGCTTGAATCTGTTCAAGAAGCCGTCCGAGAAGAACTGAATGGACCA
GGACAACTATTAGGGTACCGTGCAATGAATCAGAAACTGCGCATTCAGCA
TGGTATCAAAGTTCCACGTCATCTCGTCCATGCTGTCCTCGGAGCTGAAG
ACCCTGAAGGTGTTGAGCAGCGAAGGctcgaaaacaaacaaaaacctAGG
AAAACTCCTTTCGTCTGCGATGGTCCATGGAATGTTGCTTCTTTGGATGG
CCATGATAAGTTATGTGGTTACCAGAATTGGACTTTTCCTATTGGTATAT
ACGGATGCTTAGATACTTTCTCTCGAAAGATCCTTTTTCTTAGTGTGGTT
TATTCTAATTCTGACCCATTTGTTAttggaaggaaatattttgagttttt
gtacGAGTACAATCGCATGCCTCGGTATTTAAGAATTGATAAAGGGACTG
AAACGGGAAAAATGGCCGCAATACATGCTTACTTAACGGATAAGTTGACT
GATTACTTCGCAAACTCGAATAATTCTGTGATTTATGGCAAGTCCCCCAC
CAACAAAATTGAAAGATGGTGGAAAGATTTGCATCAACGCCTTGAGTTAT
ATTTTAAGGAACAGTTAAAAGCCCTCTTGGTTAGTAATCGTTATAATCCT
CACTCTATCGATGATCGTAAAATGCTTGCTTTTATTTACATTCCGATAGT
TCAAAGGGAAGCcgatatttttgttcaatattggAATACCCATCGTATAA
GAGAGCAAAAAGGATTGGAA Coding sequence (CDS) from alignment at sc0002707:5692..6511 >TCONS_00041109 ID=TCONS_00041109|Name=TCONS_00041109|organism=Clytia hemisphaerica|type=CDS|length=819bp|location=Sequence derived from alignment at sc0002707:5692..6511 (Clytia hemisphaerica)
TTAGATAGAAGATTGCGATATTTCCAAATATGGTATATTAACTACGACAC
AACGCTTGAATCTGTTCAAGAAGCCGTCCGAGAAGAACTGAATGGACCAG
GACAACTATTAGGGTACCGTGCAATGAATCAGAAACTGCGCATTCAGCAT
GGTATCAAAGTTCCACGTCATCTCGTCCATGCTGTCCTCGGAGCTGAAGA
CCCTGAAGGTGTTGAGCAGCGAAGGctcgaaaacaaacaaaaacctAGGA
AAACTCCTTTCGTCTGCGATGGTCCATGGAATGTTGCTTCTTTGGATGGC
CATGATAAGTTATGTGGTTACCAGAATTGGACTTTTCCTATTGGTATATA
CGGATGCTTAGATACTTTCTCTCGAAAGATCCTTTTTCTTAGTGTGGTTT
ATTCTAATTCTGACCCATTTGTTAttggaaggaaatattttgagtttttg
tacGAGTACAATCGCATGCCTCGGTATTTAAGAATTGATAAAGGGACTGA
AACGGGAAAAATGGCCGCAATACATGCTTACTTAACGGATAAGTTGACTG
ATTACTTCGCAAACTCGAATAATTCTGTGATTTATGGCAAGTCCCCCACC
AACAAAATTGAAAGATGGTGGAAAGATTTGCATCAACGCCTTGAGTTATA
TTTTAAGGAACAGTTAAAAGCCCTCTTGGTTAGTAATCGTTATAATCCTC
ACTCTATCGATGATCGTAAAATGCTTGCTTTTATTTACATTCCGATAGTT
CAAAGGGAAGCcgatatttttgttcaatattggAATACCCATCGTATAAG
AGAGCAAAAAGGATTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041109-exon-sc0002707-1491911889:5692..6511 | TCONS_00041109-exon-sc0002707-1491911889:5692..6511 | Clytia hemisphaerica | exon |
| TCONS_00041109-exon-sc0002707-1510915933:5692..6511 | TCONS_00041109-exon-sc0002707-1510915933:5692..6511 | Clytia hemisphaerica | exon |
| TCONS_00041109-exon-sc0002707-1575043694:5692..6511 | TCONS_00041109-exon-sc0002707-1575043694:5692..6511 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002707 | supercontig | sc0002707:5692..6511 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
