|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041101 ID=TCONS_00041101|Name=TCONS_00041101|organism=Clytia hemisphaerica|type=transcript|length=5052bp
GGGGACTTGTTTGGATTCATGAATAAAATTCAGCGTGTCTAGTCTAATAT
GAAACATAAAAGGAAaaagtattttcgtttcaatgAAGCAAAGAAATTCT
AGGATTTGTCTTTTAACTTGattgattttatttctttaatccTTAGGAAA
TGGAGATATACAAAAACTTTCTTAAGACACTAAATATACTTTCAAAGGAA
AGTTTTGAAGCTTTTGTTGACTTTTCAACAGCGATATTATTGGAAATTGG
AAACAATGACACTTTCCATGacaatcttttatttttggaTAGTGATCGTC
TTTCGGTTTACCCAGAAGATAAAGTATCCTCAAATTTGATACCAGGTAAG
GTTATTTCTTCTCAAATTCCATTCCTGTATTCCGTATTTTACAGTATAGA
GCACATTTTGCTTTGTATcatgtttattttcatttttctctctAAATCAT
GATTCAAGCAAATTAACAACACCAAAATACgattttattattagtatttT
GTTGTTTGAATCATGCTTATCTTATTTTATTACATATTTGACCTTTGTTT
GCTctttactttttgacataatttatCTTCggtgttctcataaaaaagaa
tGTACGATTTTAACCCGGGGGAAGGGCGCCTCGAAACCCGCTTAAGTATT
ACTACGTTTTACACCAAGAATGGAAGTgtctttttccctttttcactAAT
ACAGTTGTGTTGGTTGACTTTtgattttgtacaatttttgtTTAGACATT
CAATTGTGTGAAGGCAAAACCTCTTTAAAGACTACAGGCGATGGCAACTG
TTTGTTTAACAGCATCAGTATTCTTTTGACTGGCGAGGAAACATTGTCGG
TTGAATTGAGATTGCGTACTTGTTTGGAACTTGCTTTCAACATAAACTTT
TATGCAACACATGCAATTTTCCAGCAgcaaataaaaaccaaaaatgGAAA
AGCATTTTATAAAGCTGAAGACCTGTTTGACACTGTAGCCTTTGGAAAAA
CGTCGTCTAAAGCTATCGATAAAGAAGGATTTCATAAAGCTTTGGAAATT
GAAATCATGCAGACCTCATACGACGGAAAGTTTTCGGGTATCCTGCAAGT
AGCAGCTTTATCTTCAGTTATCGGGTGCCCCATAAACATGGTTTATCCGA
ATCAAAACTTCCATCTCCTTACAATGTTTCAAGGTTTGATATCACCGCGA
AATGAATGTTGTCCGAAACAAATAACTCTAATGTGGAGCTGTACAAATGG
ATGTTTAGAATTAGAAAAATTTACTGCCAATCACTTTGTGCCTTTGATAG
ACAAACCCAAGACAAACTATCCAGTCTCTGATGTCTTAGTTGACCAGACG
AAAACCATCGTGAATTACTATCCTCGTAAAAGAAAGGCTCCAGAAGTAAG
TGAAGATGAGCTTCCCTTCGAAATGGATAAAGAGTGGTATATAAAAGTTG
GTAGAAATGACCTTTCCAACATAAAGAGAACTGAATCCCGGAACTCTGGA
AATTGTAAGTTATCCGCATTTTTATAACCATCGCCCGTTCGTATCAGACC
TCTGaactgttttgtttttatttccaaAAGCTTCACAtcgtatatttttt
ataagcatagtgtaccaaagctaaaaaaaattttttcagcttTCTAAAAC
ATTGATCTTACTTTGTTTGGTAACTTTTAAAGCGTGTGGCGTTAAATTAC
TAAAACTAAACTATAGTCTTCGAAGTCTAATCAATCGAAAATAAATTTCC
TGacttaaaatttcgaaatcttcaaataataaaaaaaattcaacaataat
aataatttcaaatttttaactgTTAATTTGGAAATAAAATACACTGATAT
GATATTATCAAATccatcaaatttcatcaaagTAGTAGTCGATTTCGTAA
TCGAACTCGAAAACAGctgtaaataaataataaatgtagATAGCgataga
ttttttaaataaaagatttaTTCTTCCTGTACATGATTAATGAATTCTCT
ATCATACAAAGTATGCCGACTGAAAAGtgaaagtcagtttttttttgttt
tttttttcaaagagccATGCGaaaacaatgttgtttttaCATCTCAAGTA
GAAACaaatgtattttatttttctggGATTTTTCTGCAGTTTTacaactt
ttgtttttaagCAACCTTTTTAAAGAACAAGTATTCTATTTTAAAGGGAT
TTTAAATAAACGTCCCCTTCGAACAAACAGCTCCCACCTCCCACCTCCCT
CTGAGAAACTGTTGTATGAAGATATCCACATATACTTTTTATCGTACTCT
TTgagattgaaaaaaaagtttctctttttttagatTCACCTCAAGCGCAT
CACAAAGACGTGACATCTTGTATTGAAGAATTAAAGACGCATTCCTCGAC
TCATCTAAAAGCTATTGCAGAAGTTGGTCAGTACATGAAAGACAATGGAC
CTTTGTTGGAAACATCGAAGGTTATCAAAAAGTATCAAGAGATAAAAAAG
TTGTCCCCAAAATCGAAGATGAAGTCTAAAGAAATGTTTGAGATTTTAGC
AAAGCATCTACCGGTATGTGTGATATACCTCAGTAGAAAAGCATTTCTCT
ACGAGAACCTCTATCAAGAGGTGATTGACTCTGTTATGAAATTTTCGACA
AATTCTATTGATCAAGAAGATTTGAATGACcacattgaaagtaaaattgg
tGAAATCTATAAAGACGTTATCGAGTACATGGACACTAAAAGAGATAGAG
ATGCTTTTAAAGCTGTCATTTCGCAAATAACGAGTATAAGATTCGCAGCT
AAACTCCAAGGAGTCCAGAGTAGAGTTGGCATCCGGAATTCTTCACAATC
CTTGAAAGGAAATCTGATCAAGTATAAAGACATTAAATTGAGTTCCAAAA
CAGTCAGAAATGACATGACGGTTAACCAGCAACATAAATTCAACGGACGA
ATTGCAACAGcaagaaaatttaaagaaattaaggtaattaaattttgata
ttttctttattttttgttattttgtctAAGTAAAATCTGTAGAATGATTG
AAGAAGGGGAGAATGGTAGAGAAAATGTGATTGACAAAAGTTTCCGGAGG
GATATGTTTTAGATTTGTCTCAGATTTGTCTCAATATTTTTAGCCTAACA
CATGAGGTTTTTGGTAATCCTTGCCCCCTGATTAGTATCCTTGACTAATA
TAATATCGAACATTAAAGCGCGGAAAACTCACGCATTCCTCCGTATTGAA
TTTTGAGTAATCTGTTACTTTTCTAAGTTTACGATTTTATCAATACTTTC
AAAAGCGTCTTTGCGCTCTGGCGCTCTCAAGATTAAGTAACATTATTTTC
gacttctttttgacttttcacaTCTCTGTAAACAATTTATTTGTGGTGAT
TAATAGCACCGCAATGTCATTCATCTTTTTAACCTAGcccttttgaaaat
attgttttgTCCGCTGCTATCTTCGGTCAAGCTAATGTTGACAAGTCGTC
TGTGCGACGGCCTTGGCCGCTAGTAAACAAAAGGCGAAGAGAAGTATACA
ATTACTTCGAAGGCCCATCACTTGATTTTTCGatcaaactttatttttca
attttagacgATCGCCGCCGGAAGAGGAGCTCCACTCAAATGCGTACAGT
TTCCCGAATTGACAGTCCTTCTGGAGAACATATTTGCCGAGAGCGGTCTT
GAAAGCCATCCCAGGTTGACAGACGATATTTTGTACCGTGCAACGAGCAA
TGCATTGACGATGACAAAAGCCCGCGAAATTCTTTTATCACTTGCGccgg
aaaattttaaaatttgtttatcgACTTGTTTCAACTACACACAAAATTTT
AAGGCCGGGACAGCTCAGGCTAAACGTCATCACGAGGGTAGAGATATTAA
TGCTTGCATCTCTCTTCATCCACCTCCAAGAATTGGTACAGAAAAACCTT
CGCCTAATTTACATTGGTCTTCCTGTAATGTCAGCCTCATGTTGTCAAAT
CGTGTAGATGACACCATTTTTGATTCAAAGGATGCCAAGTCTATCGTTTG
TGCCGACATTTCTCCGGTTCAAAGACCGTCAAAAACATGGAAAAAGAAGG
AAGGGATATTACTAGACCATGAATGGAACCAGAGCAGAATCAATGCAGTA
ACACCTATGGCTCATTTGTTTCTTGACGACTCCAAAAACGAGGATTCTCA
CTCTATTCTTAGATCAGGTTAGATATTCTCATTATtcagaaaacattttc
aaaatcaacaaaacttACGCTTACtgtaagttcttataaaaagtatatTA
GTCTCATTtctgatttttaagaaatatatGATTACCCCCTGAATCGTTAT
TTGatcttttataatattttctctCTCCAAGTGCGTGTaaacctttcaat
caaaaaaagagagaaaaagaaacTTAAATATCTCAATGAAAAAAAAGCTT
ACAAAATTTCCCTCAAATTGTTACAGccgtctttttttataagaacaaac
aataagaacataaggcttcgatggccaaaattttaagaacaagttaaaaa
catttattttttcttctttttattgatgttttttgGGCCATGGTTGAGTT
CATATAGTATTATAGTAACACTCTTAGTCTTCAGAGCTTTCGAAAGCGAT
TTGCTAAACAAAATTATCATATTTTCATCACTAGGAAAAGCTGCGGTGTT
GATTAATCTAAGCTATTTCGAACCATCAACGACGTTTCGATGCTTTAACG
AGGTATTCAGTCTCCTGACAAACCCTTCATTAAATGGATGCTTCCTACGC
AATGGAGAACTTAAGAAGAACCTTGTAAATATTGTAGACAATGGTCCAGG
TGAAGCTCCTAGCAGTGCCATGGTTCAGATGCTACTTATAAGAACGAGAA
AGTTTCTCAAAATGGAAAGTGCTTGTCAAATGTCATTCAGCGAATATCAC
TCGAAAAGAAACTACGTCGAGAGGGTACACTCTCAAGAAAACCTTGCACT
CTCAAGACATGGCAAGTTTAGCAGCACCATGGTTCATAGCAAGAAAGAAA
AT Run BLAST on NCBI transcript from alignment at sc0002704:13561..18612+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041101 ID=TCONS_00041101|Name=TCONS_00041101|organism=Clytia hemisphaerica|type=transcript|length=5052bp|location=Sequence derived from alignment at sc0002704:13561..18612+ (Clytia hemisphaerica)
GGGGACTTGTTTGGATTCATGAATAAAATTCAGCGTGTCTAGTCTAATAT
GAAACATAAAAGGAAaaagtattttcgtttcaatgAAGCAAAGAAATTCT
AGGATTTGTCTTTTAACTTGattgattttatttctttaatccTTAGGAAA
TGGAGATATACAAAAACTTTCTTAAGACACTAAATATACTTTCAAAGGAA
AGTTTTGAAGCTTTTGTTGACTTTTCAACAGCGATATTATTGGAAATTGG
AAACAATGACACTTTCCATGacaatcttttatttttggaTAGTGATCGTC
TTTCGGTTTACCCAGAAGATAAAGTATCCTCAAATTTGATACCAGGTAAG
GTTATTTCTTCTCAAATTCCATTCCTGTATTCCGTATTTTACAGTATAGA
GCACATTTTGCTTTGTATcatgtttattttcatttttctctctAAATCAT
GATTCAAGCAAATTAACAACACCAAAATACgattttattattagtatttT
GTTGTTTGAATCATGCTTATCTTATTTTATTACATATTTGACCTTTGTTT
GCTctttactttttgacataatttatCTTCggtgttctcataaaaaagaa
tGTACGATTTTAACCCGGGGGAAGGGCGCCTCGAAACCCGCTTAAGTATT
ACTACGTTTTACACCAAGAATGGAAGTgtctttttccctttttcactAAT
ACAGTTGTGTTGGTTGACTTTtgattttgtacaatttttgtTTAGACATT
CAATTGTGTGAAGGCAAAACCTCTTTAAAGACTACAGGCGATGGCAACTG
TTTGTTTAACAGCATCAGTATTCTTTTGACTGGCGAGGAAACATTGTCGG
TTGAATTGAGATTGCGTACTTGTTTGGAACTTGCTTTCAACATAAACTTT
TATGCAACACATGCAATTTTCCAGCAgcaaataaaaaccaaaaatgGAAA
AGCATTTTATAAAGCTGAAGACCTGTTTGACACTGTAGCCTTTGGAAAAA
CGTCGTCTAAAGCTATCGATAAAGAAGGATTTCATAAAGCTTTGGAAATT
GAAATCATGCAGACCTCATACGACGGAAAGTTTTCGGGTATCCTGCAAGT
AGCAGCTTTATCTTCAGTTATCGGGTGCCCCATAAACATGGTTTATCCGA
ATCAAAACTTCCATCTCCTTACAATGTTTCAAGGTTTGATATCACCGCGA
AATGAATGTTGTCCGAAACAAATAACTCTAATGTGGAGCTGTACAAATGG
ATGTTTAGAATTAGAAAAATTTACTGCCAATCACTTTGTGCCTTTGATAG
ACAAACCCAAGACAAACTATCCAGTCTCTGATGTCTTAGTTGACCAGACG
AAAACCATCGTGAATTACTATCCTCGTAAAAGAAAGGCTCCAGAAGTAAG
TGAAGATGAGCTTCCCTTCGAAATGGATAAAGAGTGGTATATAAAAGTTG
GTAGAAATGACCTTTCCAACATAAAGAGAACTGAATCCCGGAACTCTGGA
AATTGTAAGTTATCCGCATTTTTATAACCATCGCCCGTTCGTATCAGACC
TCTGaactgttttgtttttatttccaaAAGCTTCACAtcgtatatttttt
ataagcatagtgtaccaaagctaaaaaaaattttttcagcttTCTAAAAC
ATTGATCTTACTTTGTTTGGTAACTTTTAAAGCGTGTGGCGTTAAATTAC
TAAAACTAAACTATAGTCTTCGAAGTCTAATCAATCGAAAATAAATTTCC
TGacttaaaatttcgaaatcttcaaataataaaaaaaattcaacaataat
aataatttcaaatttttaactgTTAATTTGGAAATAAAATACACTGATAT
GATATTATCAAATccatcaaatttcatcaaagTAGTAGTCGATTTCGTAA
TCGAACTCGAAAACAGctgtaaataaataataaatgtagATAGCgataga
ttttttaaataaaagatttaTTCTTCCTGTACATGATTAATGAATTCTCT
ATCATACAAAGTATGCCGACTGAAAAGtgaaagtcagtttttttttgttt
tttttttcaaagagccATGCGaaaacaatgttgtttttaCATCTCAAGTA
GAAACaaatgtattttatttttctggGATTTTTCTGCAGTTTTacaactt
ttgtttttaagCAACCTTTTTAAAGAACAAGTATTCTATTTTAAAGGGAT
TTTAAATAAACGTCCCCTTCGAACAAACAGCTCCCACCTCCCACCTCCCT
CTGAGAAACTGTTGTATGAAGATATCCACATATACTTTTTATCGTACTCT
TTgagattgaaaaaaaagtttctctttttttagatTCACCTCAAGCGCAT
CACAAAGACGTGACATCTTGTATTGAAGAATTAAAGACGCATTCCTCGAC
TCATCTAAAAGCTATTGCAGAAGTTGGTCAGTACATGAAAGACAATGGAC
CTTTGTTGGAAACATCGAAGGTTATCAAAAAGTATCAAGAGATAAAAAAG
TTGTCCCCAAAATCGAAGATGAAGTCTAAAGAAATGTTTGAGATTTTAGC
AAAGCATCTACCGGTATGTGTGATATACCTCAGTAGAAAAGCATTTCTCT
ACGAGAACCTCTATCAAGAGGTGATTGACTCTGTTATGAAATTTTCGACA
AATTCTATTGATCAAGAAGATTTGAATGACcacattgaaagtaaaattgg
tGAAATCTATAAAGACGTTATCGAGTACATGGACACTAAAAGAGATAGAG
ATGCTTTTAAAGCTGTCATTTCGCAAATAACGAGTATAAGATTCGCAGCT
AAACTCCAAGGAGTCCAGAGTAGAGTTGGCATCCGGAATTCTTCACAATC
CTTGAAAGGAAATCTGATCAAGTATAAAGACATTAAATTGAGTTCCAAAA
CAGTCAGAAATGACATGACGGTTAACCAGCAACATAAATTCAACGGACGA
ATTGCAACAGcaagaaaatttaaagaaattaaggtaattaaattttgata
ttttctttattttttgttattttgtctAAGTAAAATCTGTAGAATGATTG
AAGAAGGGGAGAATGGTAGAGAAAATGTGATTGACAAAAGTTTCCGGAGG
GATATGTTTTAGATTTGTCTCAGATTTGTCTCAATATTTTTAGCCTAACA
CATGAGGTTTTTGGTAATCCTTGCCCCCTGATTAGTATCCTTGACTAATA
TAATATCGAACATTAAAGCGCGGAAAACTCACGCATTCCTCCGTATTGAA
TTTTGAGTAATCTGTTACTTTTCTAAGTTTACGATTTTATCAATACTTTC
AAAAGCGTCTTTGCGCTCTGGCGCTCTCAAGATTAAGTAACATTATTTTC
gacttctttttgacttttcacaTCTCTGTAAACAATTTATTTGTGGTGAT
TAATAGCACCGCAATGTCATTCATCTTTTTAACCTAGcccttttgaaaat
attgttttgTCCGCTGCTATCTTCGGTCAAGCTAATGTTGACAAGTCGTC
TGTGCGACGGCCTTGGCCGCTAGTAAACAAAAGGCGAAGAGAAGTATACA
ATTACTTCGAAGGCCCATCACTTGATTTTTCGatcaaactttatttttca
attttagacgATCGCCGCCGGAAGAGGAGCTCCACTCAAATGCGTACAGT
TTCCCGAATTGACAGTCCTTCTGGAGAACATATTTGCCGAGAGCGGTCTT
GAAAGCCATCCCAGGTTGACAGACGATATTTTGTACCGTGCAACGAGCAA
TGCATTGACGATGACAAAAGCCCGCGAAATTCTTTTATCACTTGCGccgg
aaaattttaaaatttgtttatcgACTTGTTTCAACTACACACAAAATTTT
AAGGCCGGGACAGCTCAGGCTAAACGTCATCACGAGGGTAGAGATATTAA
TGCTTGCATCTCTCTTCATCCACCTCCAAGAATTGGTACAGAAAAACCTT
CGCCTAATTTACATTGGTCTTCCTGTAATGTCAGCCTCATGTTGTCAAAT
CGTGTAGATGACACCATTTTTGATTCAAAGGATGCCAAGTCTATCGTTTG
TGCCGACATTTCTCCGGTTCAAAGACCGTCAAAAACATGGAAAAAGAAGG
AAGGGATATTACTAGACCATGAATGGAACCAGAGCAGAATCAATGCAGTA
ACACCTATGGCTCATTTGTTTCTTGACGACTCCAAAAACGAGGATTCTCA
CTCTATTCTTAGATCAGGTTAGATATTCTCATTATtcagaaaacattttc
aaaatcaacaaaacttACGCTTACtgtaagttcttataaaaagtatatTA
GTCTCATTtctgatttttaagaaatatatGATTACCCCCTGAATCGTTAT
TTGatcttttataatattttctctCTCCAAGTGCGTGTaaacctttcaat
caaaaaaagagagaaaaagaaacTTAAATATCTCAATGAAAAAAAAGCTT
ACAAAATTTCCCTCAAATTGTTACAGccgtctttttttataagaacaaac
aataagaacataaggcttcgatggccaaaattttaagaacaagttaaaaa
catttattttttcttctttttattgatgttttttgGGCCATGGTTGAGTT
CATATAGTATTATAGTAACACTCTTAGTCTTCAGAGCTTTCGAAAGCGAT
TTGCTAAACAAAATTATCATATTTTCATCACTAGGAAAAGCTGCGGTGTT
GATTAATCTAAGCTATTTCGAACCATCAACGACGTTTCGATGCTTTAACG
AGGTATTCAGTCTCCTGACAAACCCTTCATTAAATGGATGCTTCCTACGC
AATGGAGAACTTAAGAAGAACCTTGTAAATATTGTAGACAATGGTCCAGG
TGAAGCTCCTAGCAGTGCCATGGTTCAGATGCTACTTATAAGAACGAGAA
AGTTTCTCAAAATGGAAAGTGCTTGTCAAATGTCATTCAGCGAATATCAC
TCGAAAAGAAACTACGTCGAGAGGGTACACTCTCAAGAAAACCTTGCACT
CTCAAGACATGGCAAGTTTAGCAGCACCATGGTTCATAGCAAGAAAGAAA
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041101-exon-sc0002704-1491911889:13561..18612 | TCONS_00041101-exon-sc0002704-1491911889:13561..18612 | Clytia hemisphaerica | exon |
| TCONS_00041101-exon-sc0002704-1510915933:13561..18612 | TCONS_00041101-exon-sc0002704-1510915933:13561..18612 | Clytia hemisphaerica | exon |
| TCONS_00041101-exon-sc0002704-1575043694:13561..18612 | TCONS_00041101-exon-sc0002704-1575043694:13561..18612 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002704 | supercontig | sc0002704:13561..18612 + |
Blast
The following BLAST results are available for this feature:
|
