TCONS_00041094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041094
Unique NameTCONS_00041094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041094 ID=TCONS_00041094|Name=TCONS_00041094|organism=Clytia hemisphaerica|type=transcript|length=321bp
NNTTGATTCTGGATAGTGGTATCTTTCCATCCTTGAACCCTAAGTGCCAT
CACCAGATAACCTTTTGtaaactaaattttaaaatccccTTCCCACCATC
TTACAAACGAAAGGTTTGGGACTTTTCCAAAGCAAATCCCGATCTTATTC
GAAGGGCGGTGGACATGGTTGCCTGGGATAGGTTTTTTGAGGGAACTGAT
ATGGATGGCCGGGTCTCCTTCTTGACTGAAACGATCATTAATATCATGTC
AAACTTTGTGCCTAATAAAATCATTACCATCAGGAATAAGGATGCAGTAT
GGATGACAGCTGAGATAAAGA
Run BLAST on NCBI

protein sequence of TCONS_00041094-protein

>TCONS_00041094-protein ID=TCONS_00041094-protein|Name=TCONS_00041094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
LILDSGIFPSLNPKCHHQITFCKLNFKIPFPPSYKRKVWDFSKANPDLIR
RAVDMVAWDRFFEGTDMDGRVSFLTETIINIMSNFVPNKIITIRNKDAVW
MTAEIK
Run BLAST on NCBI

transcript from alignment at sc0002700:4..324

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041094 ID=TCONS_00041094|Name=TCONS_00041094|organism=Clytia hemisphaerica|type=transcript|length=321bp|location=Sequence derived from alignment at sc0002700:4..324 (Clytia hemisphaerica)
TCTTTATCTCAGCTGTCATCCATACTGCATCCTTATTCCTGATGGTAATG
ATTTTATTAGGCACAAAGTTTGACATGATATTAATGATCGTTTCAGTCAA
GAAGGAGACCCGGCCATCCATATCAGTTCCCTCAAAAAACCTATCCCAGG
CAACCATGTCCACCGCCCTTCGAATAAGATCGGGATTTGCTTTGGAAAAG
TCCCAAACCTTTCGTTTGTAAGATGGTGGGAAggggattttaaaatttag
tttaCAAAAGGTTATCTGGTGATGGCACTTAGGGTTCAAGGATGGAAAGA
TACCACTATCCAGAATCAANN

Coding sequence (CDS) from alignment at sc0002700:4..324

>TCONS_00041094 ID=TCONS_00041094|Name=TCONS_00041094|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0002700:4..324 (Clytia hemisphaerica)
CTTTATCTCAGCTGTCATCCATACTGCATCCTTATTCCTGATGGTAATGA
TTTTATTAGGCACAAAGTTTGACATGATATTAATGATCGTTTCAGTCAAG
AAGGAGACCCGGCCATCCATATCAGTTCCCTCAAAAAACCTATCCCAGGC
AACCATGTCCACCGCCCTTCGAATAAGATCGGGATTTGCTTTGGAAAAGT
CCCAAACCTTTCGTTTGTAAGATGGTGGGAAggggattttaaaatttagt
ttaCAAAAGGTTATCTGGTGATGGCACTTAGGGTTCAAGGATGGAAAGAT
ACCACTATCCAGAATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025106XLOC_025106Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041094-proteinTCONS_00041094-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041094-exon-sc0002700-1491911889:4..324TCONS_00041094-exon-sc0002700-1491911889:4..324Clytia hemisphaericaexon
TCONS_00041094-exon-sc0002700-1510915933:4..324TCONS_00041094-exon-sc0002700-1510915933:4..324Clytia hemisphaericaexon
TCONS_00041094-exon-sc0002700-1575043694:4..324TCONS_00041094-exon-sc0002700-1575043694:4..324Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002700supercontigsc0002700:4..324 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26693	2.16204	1.7931	3.15768	0	1.01257	0	0.762447	0	0	0	0.632825	0.210648	0	0.719403	0.579022	0	0.731118	0.336693	0	0	0	0.363158	0	0.340061	0.606992	0.434302	0	0.703095	1.07451
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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