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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041024 ID=TCONS_00041024|Name=TCONS_00041024|organism=Clytia hemisphaerica|type=transcript|length=819bp
GAAGAGTCACAGACACAATTCAATTTTCCATCACCAAAAATACgtAAAGT
TAGCAAGGATGACCAACAGCGTGAAAGCAGCAACAtatcTCAAAGTCAAA
CGAGCTCCAAATTTATCAACCAAGTCAATGTAGAAGATCTGACCAACAAG
GATTTCGAAAATATTGCAAGAATATTCAGCAACAAAAAGACCTTGAGCAA
ATCTGCAATTCTTGCAGATGTTacaaactttaaacagttgCGTTTGGACG
TAAGGAACATGAGAGACATCCACCTGATGGCTGAGAGTGTGGGGCGTCAG
CTGGTCGAACACCGCATGGTGATCATTGGGTCTTGTCCAGTTACGGAGAA
AGATGATGTCATTCTTATTGCAAAGTAATTCTTTTTACAGCTTATTTTTA
GGGTAACAATCTTTTTTTCGGAATAAAAGTCTTTCATTTAAGTTGTGTTT
TTATTCAGAATTAAAGGTCCCATTACACATAAAATATTGACAAGAATTAG
AGAATTTCTCGTTGTACCTGTAATTCTTTACCTCATTCTTCAGCAAAATA
CACCCTAGAATGGGAAAAGAattagttttcattttttgtctGATTTTTCT
TATGTCGCTTTCAACATCGTGTGTCTTTTTAtgatgtttgtttacatttt
tgattttcatagatTATGatatattgtttaaaaattaagGAATAAGGGCC
TGGTTTTTCAACAAAGTCCAGAAAATACTGCAAACacgaaaaaaattaag
tttttagtCTAGGCTAGGTgtttttatggttttttgaaaacaCTGCAACA
CATGTGTACTGTACTTAAT Run BLAST on NCBI transcript from alignment at sc0002668:5050..11191- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041024 ID=TCONS_00041024|Name=TCONS_00041024|organism=Clytia hemisphaerica|type=transcript|length=6142bp|location=Sequence derived from alignment at sc0002668:5050..11191- (Clytia hemisphaerica)
GAAGAGTCACAGACACAATTCAATTTTCCATCACCAAAAATACGTGTAAG
AAAATTTTTTTAATTTTAAACAAATAGATTGGTAATAGACAGAGCTCCAG
GCTTTTAAGTTTTCCTCTTGGTCAGTAAGACTTATGCTTCGCAAATAATG
ACCCCGGGAGATTTGTAAACAATCTTCTTGATTTTCTCACTTTTTAAATT
GCTTTTCTCATTTTTAATCATTTTTATTGAAAAAAAATGGCTCGGCTCTT
CGATTTCCCTAGCCTGGATATCCAGCCCGTAAACTTTTTTTGATTTTGAT
ATTTCTTATGTTTACGGTCTGGTTTACCTAGATCGTCTGCATTCTCATCT
GAGGATGATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATACCAAACCT
TGTTTGAGTATGCACATATTTTTGGAAATGTAGCTTTAAAGAAAAAAAAT
TAAAACCACAGTAGCTGATCTGTACTGCAAATAGTGATCACGGAGCTGAT
TGATTTCTGGAGTTTGCTCACATATCTCATTACTATAAAGTCCCAACTTT
TTTTAATATAGCAGAATTAATAGAAAAAAATTTAAAAAGTTTATCAAAAT
ACTTTTTCTAAATCGTAACACAAATAATTCCTTTAAATATAATCTACCTT
AAGAGAAGTAATTTTGGTGAGAATTTACTTTGGTGAGTGGGCAATTTCTT
ATTATAATTTTGTTGAGAATTTATTCCAGTCTGTATTTTGTTGACTTTAA
ATGTTCGAGATTGTGCTCATTCTTCTTTAAAAAATTGGTATATGGCTGCT
GTGGGGTGAAATCAGAAGTACAATGGTGTACAAGCTATCTATCGGTACTA
CGTTAGCTCATCCCTGATTTCATCATTTTTTCACTTTGAAAGCGACGCAA
AATGATATCATTTCAAGTTCAGGGTACATACATGAATGATAAACTCAAAG
ATTCTTAAAGCTTTAGTGTGTAAAGTACCAGATTATGTCCTAAACTAGAC
CCATTTTCAGAATGTATTCCAATAAAGTACCTTAAGGAAAGAAATTTTGG
CAATTGGGCTCATTCGCTAATTTCAATGCAATTTTGCAGAATTTATTTTG
CGGAATAAAGAAAGAATTTAGCAAGAATTAAGTTGAAAAATTTTGCCAAA
TTTTCTATGGTTTTTCTAAATTTTTGCTAGCCTGATTAATCAAGCTCGAA
TTCACAAGGCTAAGATACAGCTTATGGCAATATAGAGCATTGGTGCTTTA
AAGATTTTTATGTTTGCGGATTTTGAAGTTTGCCTCGGAATTCTGGTTTA
AAAAAAGCACTGCACCCTTTAGAATTTTGTATTAATTTTAATTTTTTATA
TTTACAGCCTCTAACATTGATGGGAAGCTTTTTACTGTAATGTGCCAAAG
CACTAGTAAACATCACTACTTCTCTATGTTGGAGCTGTTTCTAGTGGAAA
TGTTGAAATTAGAAAGCGACTTTACTGCAATTTCACCAATAATTCCATCA
AAAACACCCGTCACACCAAGTTCGCACGCTTTAGTTACTGGCCGTCACAG
ATTACAGTAAGTTTACCATTTTAATGTAAATGATGATTATTTTTACTGAC
GATGTTCTTAAAAAAAGGTATAGCTCTCAAAAGATACTTAATCTTGGTAA
ATTAAAGGAGAATAGAAATATGGGTCTTATCATTTTGACAAAAGAGCTCT
AAATTAATTTGTGTGTAATTTGATAATGCAAATTTTAAGGCCAAATTCCC
ATTGACTTATTCTAATTGTTGTATTAATTTATTCCCTTAAAACCCTATTC
GCACCTAGCTTTTAGGGGCGGTTCAAAACTAGGCTGTTTTAGAGACCTGT
AGTTTATATAACAATGATATTTTGTTTTTCATTTTTACAATTGTGATTTT
AAATATTTTAGGTTAAAAATGATCCGAACAGAATCTTCTAAAATGTGGCC
CGATAATCACAACCTACCACGCTTTGACACTGATGCGAACAAAGATGCTT
TAGCTAAGCTGGTGTCAAGTCTTAAGTCAAAAAGCTTGTTTGGACATTTG
GATAAGAAAGCCATCAAAGCCAAAGTTCTGTCACACATGACCGATAGGCG
GAAAACATCAAGAAAAATTGATTTCGTATGTATTGATTTTGATTTTCAAA
TTATTGTTTTCTATATTTTGCCATCTTCCTATTTTTAATTTAGGTTATAT
TGGAGCTGGCTATTTTTTCTGCTTCTGACTTATTTTCTTTGTATGTTGTT
TTGTTATTACCGAATTTTTGCAATATGACCTATCTTAAGTCTGGCTGAGT
ATGTGGATATCATTATTTATAAAACATTGAGTTACATTTTTAGACCACCA
AAAAATCCAATTCAATGAAATCACCTAAGGAAATAGTCACCACACCACAA
AAACCAAACAACAACAAGGATTTCGAGGATGAAGAAGAGTTGTAATTTAA
TTCTATCCCTCCAAAAAGATGTGTAAGAATAAATTTAAATTTAGGCAAGG
ATTGAGAAGTTTTAAAAGGGTGGTTTTAAGCATACAGCTGTTCTAGTTAT
ATATTATTATTATATAATTATAATATTATATAAAATGCCTTTCTGCTTTA
AGGCTAATTTTAATTTTGAGAAAATTTCTTTAAATTATCTAAAAAGAAAA
AGGGTGTATTATACAATTGTTTCTTATTCCATGAAATGCCAAGTATGTGG
ATTAATAAGATATTTGTAAATAACTGAATTATATTTTTAGGCTGAATCTT
CAAAAGAATCACCGGAGAAAATATCCACATATTCCACGTCCACTTCCACT
TCCACAAATAAAAAGTTAAACATGAACATGAGTGAGGAAGAAGAGTCACA
GACACAATTCAATTTTCCATCACCAAAAATACGTGTAAGAATAAATTTTT
AATTTTAAACAAATAGATTGGTAATCGACAGAGCTCCAGGCTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAAGCAAATAACAATAGAATATCTAATTATCTCCCTTGGGTGTTTGACC
ACGTATCCAAATAAAAATAACAATAATGGTAGGGAAGAAGTGTGAAGATC
AAAACATGGGAATTTTTGATGTTCTTGTTGTTTTCTTTTCAATTACTTTG
CTTAGATATTCTTGTTTTAATCTTCTTAATGACTTGGTTGCATCGTGTAA
AGAACTAAAGGTATATCTTTCTTTTGCTTCAATTCTTCTTTTCTGTTTGN
NTTCCCTAGTAAACTAGCATCTGTTTACCTTTCAGAAAGTTAACAAGGAT
GACCAACAGCGTGAAAGCAGCAACAGTAAGTTGGATTTCCTTTTTGACAA
GCAATGAAACGTTAATAAAAATCAGTCATTTTAATTATTTTAGCTCGTGA
CCACTCAGGAAAAAAATGCCCAAATATCTCATGGAGAAAGAAATGCCTTG
AAAGGAACATGTGAGAACCAGATTGTTTAGACAATGTTCTCTTCTATTTT
ATTTAGTATCTCAAACTCGAACGAGCGCCAAATTTATCAACCAAGTCAAT
GTAGAAGGTAAGGCGGATATTTCATAACTTGCCAAAATCCTGATAAAATT
TTTACCAGAAACGTTCAAAAACGTTCTTTTCACAGAATTTGATATTCTTT
TAATGATATGTGAATCTTGAAAGTTTTCTAATTTTTTTGAAAGTTCCTTC
TTTTCCCCCCTCTCCCTGCTTATTCCAAACTCCCCGGCTATTAGGCACCC
GAGAGTAATAATATAATCTTTCGTTTCAGATCTGACCAACAAGGATTTCG
AGAATATTGCAAGAATATTCAGCAACAAAAAGACCTTGTGCAAATCTGCA
ATTCTTGCAGATGTTACAAACTTTAAACAGTTGCGTTTGGACGTAAGGAA
CATGAGAGACATCCACCTGATGGCTGAGAGTGTGGGGCGTCAGCTGGTCG
AACACCGCATGGTGATCATTGGGTCTTGTCCAGTTACGGAGAAAGATGAT
GTCATTCTTATTGCAAAGTAATTCTTTTTACAGCTTATTTTTAGGGTAAC
AATCTTTTTTTCGGAATAAAAGTCTTTCATTTAAGTTGTGTTTTTATTCA
GAATTAAAGGTCCCATTACACATAAAATATTGACAAGAATTAGAGAATTT
CTCGTTGTACCTGTAATTCTTTACCTCATTCTTCAGCAAAATACACCCTA
GAATGGGAAAAGAATTAGTTTTCATTTTTTGTCTGATTTTTCTTATGTCG
CTTTCAACATCGTGTGTCTTTTTATGATGTTTGTTTACATTTTTGATTTT
CATAGATTATGATATATTGTTTAAAAATTAAGGAATAAGGGCCTGGTTTT
TCAACAAAGTCCAGAAAATACTGCAAACACGAAAAAAATTAAGATTTTAG
TCTAGGCTAGGTGTTTTTATGGTTTTTTGAAAACACTGCAACACATGTGT
ACTGTACTTAATGGGAAATGTTTCTGGTACTTTCAGTGTAAATTTAAAAT
NGAAGAGTCACAGACACAATTCAATTTTCCATCACCAAAAATACGTGTAA
GAATAAATTTTTAATTTTAAACAAATAGATTGGTAATCGACAGAGCTCCA
GGCTTTTAAGTTTTCCTCTTGGTCTGTAAGACTTATGCTTTGCCATTAAT
GACCCAGGGAGATTTGTAAACAATCTTCTATATTTGTTCTCTCAATTTTT
CTTGCTTTTCTCACTTTTTAAATTGCTTTTCTCATTTTTTATCATTTTTA
TTGAAAAAAATGGCTTGGCTCTTCGATTTCCCTAGTAAACTAGCATCTGT
TTACTTTTCAGAAAGTTAGCAAGGATGACCAACAGCGTGAAAGCAGCAAC
AGTAAGTTGGATTTCCTTTTGGACAAGTAATGAAACATTGATAAAAATCA
GTCATTTTAATTCTTTAAGCTCGTGACCACTCAGGAAAATAATGCCCAAA
TATCTCAGGGAGAAAGAAATGCCTCAAAAGGAACGTGTGAGAACCAGATT
GTTTAGACAATGTTCTCTTCTATTTTATTTAGTATCTCAAAGTCAAACGA
GCTCCAAATTTATCAACCAAGTCAATGTAGAAGGTAAGGCGGATATTTCA
TAACTTGCCAAAATCCTGATAAAATTTTTACCAGAAACGTTTAAAAAAGT
CTACTTTTCACAGAATTTGATATTTTTTTAATGATATGTGAATCTTGAAA
GTTTTCTAATTTTTTTTGAAAGTTCCTTCTTTTGCCCCCCTCTCCCTGCT
TATTCCAAACTCCCCGGCTATTAGGCACCCAAGAGTAATAATATAATCTT
TCGTTTCAGATCTGACCAACAAGGATTTCGAAAATATTGCAAGAATATTC
AGCAACAAAAAGACCTTGAGCAAATCTGCAATTCTTGCAGATGTTACAAA
CTTTAAACAGTTGCGTTTGGACGTAAGGAACATGAGAGACATCCACCTGA
TGGCTGAGAGTGTGGGGCGTCAGCTGGTCGAACACCGCATGGTGATCATT
GGGTCTTGTCCAGTTACGGAGAAAGATGATGTCATTCTTATTGCAAAGTA
ATTCTTTTTACAGCTTATTTTTAGGGTAACAATCTTTTTTTCGGAATAAA
AGTCTTTCATTTAAGTTGTGTTTTTATTCAGAATTAAAGGTCCCATTACA
CATAAAATATTGACAAGAATTAGAGAATTTCTCGTTGTACCTGTAATTCT
TTACCTCATTCTTCAGCAAAATACACCCTAGAATGGGAAAAGAATTAGTT
TTCATTTTTTGTCTGATTTTTCTTATGTCGCTTTCAACATCGTGTGTCTT
TTTATGATGTTTGTTTACATTTTTGATTTTCATAGATTATGATATATTGT
TTAAAAATTAAGGAATAAGGGCCTGGTTTTTCAACAAAGTCCAGAAAATA
CTGCAAACACGAAAAAAATTAAGTTTTTAGTCTAGGCTAGGTGTTTTTAT
GGTTTTTTGAAAACACTGCAACACATGTGTACTGTACTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041024-exon-sc0002668-1575043694:11147..11191 | TCONS_00041024-exon-sc0002668-1575043694:11147..11191 | Clytia hemisphaerica | exon |
| TCONS_00041024-exon-sc0002668-1575043694:6191..6230 | TCONS_00041024-exon-sc0002668-1575043694:6191..6230 | Clytia hemisphaerica | exon |
| TCONS_00041024-exon-sc0002668-1575043694:5959..6009 | TCONS_00041024-exon-sc0002668-1575043694:5959..6009 | Clytia hemisphaerica | exon |
| TCONS_00041024-exon-sc0002668-1575043694:5050..5732 | TCONS_00041024-exon-sc0002668-1575043694:5050..5732 | Clytia hemisphaerica | exon |
| TCONS_00041024-exon-sc0002668-1510915933:11147..11191 | TCONS_00041024-exon-sc0002668-1510915933:11147..11191 | Clytia hemisphaerica | exon |
| TCONS_00041024-exon-sc0002668-1510915933:6191..6230 | TCONS_00041024-exon-sc0002668-1510915933:6191..6230 | Clytia hemisphaerica | exon |
| TCONS_00041024-exon-sc0002668-1510915933:5959..6009 | TCONS_00041024-exon-sc0002668-1510915933:5959..6009 | Clytia hemisphaerica | exon |
| TCONS_00041024-exon-sc0002668-1510915933:5050..5732 | TCONS_00041024-exon-sc0002668-1510915933:5050..5732 | Clytia hemisphaerica | exon |
| TCONS_00041024-exon-sc0002668-1491911889:11147..11191 | TCONS_00041024-exon-sc0002668-1491911889:11147..11191 | Clytia hemisphaerica | exon |
| TCONS_00041024-exon-sc0002668-1491911889:6191..6230 | TCONS_00041024-exon-sc0002668-1491911889:6191..6230 | Clytia hemisphaerica | exon |
| TCONS_00041024-exon-sc0002668-1491911889:5959..6009 | TCONS_00041024-exon-sc0002668-1491911889:5959..6009 | Clytia hemisphaerica | exon |
| TCONS_00041024-exon-sc0002668-1491911889:5050..5732 | TCONS_00041024-exon-sc0002668-1491911889:5050..5732 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002668 | supercontig | sc0002668:5050..11191 - |
Blast
The following BLAST results are available for this feature:
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