TCONS_00041022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041022
Unique NameTCONS_00041022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length908

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041022 ID=TCONS_00041022|Name=TCONS_00041022|organism=Clytia hemisphaerica|type=transcript|length=908bp
gtttttatggttttttgaaaacaCTGCAACACATGTGTACTGTACTTAAT
GGGAAATGTTTCTGGTACTTTCAGTGTAAATTTAAAATNGAAGAGTCACA
GACACAATTCAATTTTCCATCACCAAAAATACGtAAAGTTAGCAAGGATG
ACCAACAGCGTGAAAGCAGCAACAtatcTCAAAGTCAAACGAGCTCCAAA
TTTATCAACCAAGTCAATGTAGAAGATCTGACCAACAAGGATTTCGAAAA
TATTGCAAGAATATTCAGCAACAAAAAGACCTTGAGCAAATCTGCAATTC
TTGCAGATGTTacaaactttaaacagttgCGTTTGGACGTAAGGAACATG
AGAGACATCCACCTGATGGCTGAGAGTGTGGGGCGTCAGCTGGTCGAACA
CCGCATGGTGATCATTGGGTCTTGTCCAGTTACGGAGAAAGATGATGTCA
TTCTTATTGCAAAGTAATTCTTTTTACAGCTTATTTTTAGGGTAACAATC
TTTTTTTCGGAATAAAAGTCTTTCATTTAAGTTGTGTTTTTATTCAGAAT
TAAAGGTCCCATTACACATAAAATATTGACAAGAATTAGAGAATTTCTCG
TTGTACCTGTAATTCTTTACCTCATTCTTCAGCAAAATACACCCTAGAAT
GGGAAAAGAattagttttcattttttgtctGATTTTTCTTATGTCGCTTT
CAACATCGTGTGTCTTTTTAtgatgtttgtttacatttttgattttcata
gatTATGatatattgtttaaaaattaagGAATAAGGGCCTGGTTTTTCAA
CAAAGTCCAGAAAATACTGCAAACacgaaaaaaattaagtttttagtCTA
GGCTAGGTgtttttatggttttttgaaaacaCTGCAACACATGTGTACTG
TACTTAAT
Run BLAST on NCBI

transcript from alignment at sc0002668:5050..6629-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041022 ID=TCONS_00041022|Name=TCONS_00041022|organism=Clytia hemisphaerica|type=transcript|length=1580bp|location=Sequence derived from alignment at sc0002668:5050..6629- (Clytia hemisphaerica)
GTTTTTATGGTTTTTTGAAAACACTGCAACACATGTGTACTGTACTTAAT
GGGAAATGTTTCTGGTACTTTCAGTGTAAATTTAAAATNGAAGAGTCACA
GACACAATTCAATTTTCCATCACCAAAAATACGTGTAAGAATAAATTTTT
AATTTTAAACAAATAGATTGGTAATCGACAGAGCTCCAGGCTTTTAAGTT
TTCCTCTTGGTCTGTAAGACTTATGCTTTGCCATTAATGACCCAGGGAGA
TTTGTAAACAATCTTCTATATTTGTTCTCTCAATTTTTCTTGCTTTTCTC
ACTTTTTAAATTGCTTTTCTCATTTTTTATCATTTTTATTGAAAAAAATG
GCTTGGCTCTTCGATTTCCCTAGTAAACTAGCATCTGTTTACTTTTCAGA
AAGTTAGCAAGGATGACCAACAGCGTGAAAGCAGCAACAGTAAGTTGGAT
TTCCTTTTGGACAAGTAATGAAACATTGATAAAAATCAGTCATTTTAATT
CTTTAAGCTCGTGACCACTCAGGAAAATAATGCCCAAATATCTCAGGGAG
AAAGAAATGCCTCAAAAGGAACGTGTGAGAACCAGATTGTTTAGACAATG
TTCTCTTCTATTTTATTTAGTATCTCAAAGTCAAACGAGCTCCAAATTTA
TCAACCAAGTCAATGTAGAAGGTAAGGCGGATATTTCATAACTTGCCAAA
ATCCTGATAAAATTTTTACCAGAAACGTTTAAAAAAGTCTACTTTTCACA
GAATTTGATATTTTTTTAATGATATGTGAATCTTGAAAGTTTTCTAATTT
TTTTTGAAAGTTCCTTCTTTTGCCCCCCTCTCCCTGCTTATTCCAAACTC
CCCGGCTATTAGGCACCCAAGAGTAATAATATAATCTTTCGTTTCAGATC
TGACCAACAAGGATTTCGAAAATATTGCAAGAATATTCAGCAACAAAAAG
ACCTTGAGCAAATCTGCAATTCTTGCAGATGTTACAAACTTTAAACAGTT
GCGTTTGGACGTAAGGAACATGAGAGACATCCACCTGATGGCTGAGAGTG
TGGGGCGTCAGCTGGTCGAACACCGCATGGTGATCATTGGGTCTTGTCCA
GTTACGGAGAAAGATGATGTCATTCTTATTGCAAAGTAATTCTTTTTACA
GCTTATTTTTAGGGTAACAATCTTTTTTTCGGAATAAAAGTCTTTCATTT
AAGTTGTGTTTTTATTCAGAATTAAAGGTCCCATTACACATAAAATATTG
ACAAGAATTAGAGAATTTCTCGTTGTACCTGTAATTCTTTACCTCATTCT
TCAGCAAAATACACCCTAGAATGGGAAAAGAATTAGTTTTCATTTTTTGT
CTGATTTTTCTTATGTCGCTTTCAACATCGTGTGTCTTTTTATGATGTTT
GTTTACATTTTTGATTTTCATAGATTATGATATATTGTTTAAAAATTAAG
GAATAAGGGCCTGGTTTTTCAACAAAGTCCAGAAAATACTGCAAACACGA
AAAAAATTAAGTTTTTAGTCTAGGCTAGGTGTTTTTATGGTTTTTTGAAA
ACACTGCAACACATGTGTACTGTACTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025049XLOC_025049Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041022-exon-sc0002668-1575043694:6496..6629TCONS_00041022-exon-sc0002668-1575043694:6496..6629Clytia hemisphaericaexon
TCONS_00041022-exon-sc0002668-1575043694:6191..6230TCONS_00041022-exon-sc0002668-1575043694:6191..6230Clytia hemisphaericaexon
TCONS_00041022-exon-sc0002668-1575043694:5959..6009TCONS_00041022-exon-sc0002668-1575043694:5959..6009Clytia hemisphaericaexon
TCONS_00041022-exon-sc0002668-1575043694:5050..5732TCONS_00041022-exon-sc0002668-1575043694:5050..5732Clytia hemisphaericaexon
TCONS_00041022-exon-sc0002668-1510915933:6496..6629TCONS_00041022-exon-sc0002668-1510915933:6496..6629Clytia hemisphaericaexon
TCONS_00041022-exon-sc0002668-1510915933:6191..6230TCONS_00041022-exon-sc0002668-1510915933:6191..6230Clytia hemisphaericaexon
TCONS_00041022-exon-sc0002668-1510915933:5959..6009TCONS_00041022-exon-sc0002668-1510915933:5959..6009Clytia hemisphaericaexon
TCONS_00041022-exon-sc0002668-1510915933:5050..5732TCONS_00041022-exon-sc0002668-1510915933:5050..5732Clytia hemisphaericaexon
TCONS_00041022-exon-sc0002668-1491911889:6496..6629TCONS_00041022-exon-sc0002668-1491911889:6496..6629Clytia hemisphaericaexon
TCONS_00041022-exon-sc0002668-1491911889:6191..6230TCONS_00041022-exon-sc0002668-1491911889:6191..6230Clytia hemisphaericaexon
TCONS_00041022-exon-sc0002668-1491911889:5959..6009TCONS_00041022-exon-sc0002668-1491911889:5959..6009Clytia hemisphaericaexon
TCONS_00041022-exon-sc0002668-1491911889:5050..5732TCONS_00041022-exon-sc0002668-1491911889:5050..5732Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002668supercontigsc0002668:5050..6629 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.215033	0	0	0	0	0	0	0	0	0	0.647444	0	0.266753	0	0	0.805932	0	0.039307	0.324183	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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