TCONS_00041020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041020
Unique NameTCONS_00041020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041020 ID=TCONS_00041020|Name=TCONS_00041020|organism=Clytia hemisphaerica|type=transcript|length=451bp
GTGATTCGCACATATACTGGAATATAATGAGGAGTGACATACAAATACCT
CAGATCGCTTTGATTAATTCAAATGATGAACATgttGGAAGAAAGAACAG
CACATATACCAATAGCAAGTTTTCTGATGAAGATTCTTCCGACTCGTCTA
GCGATTCTGACAATGAAGAGacTGGAAGAAAGAACAGCACATTTACAAAT
AGCAAGTTTTCTGATGAAGATTCTCCCGACTCGTCTAGCGATTCTGACAA
TGAAGAGacTGGAAGAAAGAACAGCACATATACAAATAGCAAGTTTTCCG
ATGAAGACTCTCCAGACTCGTCTAGCGATTCTGACGAAGAGGTATTTTTC
TAATTATGAGAGAACATGATCGATATCCTGAATACTGACATTAGTGACAG
TATTTACATAttaagagaactaattttggcgagtttAGCCGAACTAATTT
T
Run BLAST on NCBI

transcript from alignment at sc0002668:17077..19135+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041020 ID=TCONS_00041020|Name=TCONS_00041020|organism=Clytia hemisphaerica|type=transcript|length=2059bp|location=Sequence derived from alignment at sc0002668:17077..19135+ (Clytia hemisphaerica)
GTGATTCGCACATATACTGGAATATAATGGTCTGGTGATGTTGAACTTCA
AAGCCTTTTATACACCTATAGACCTTTTACTAATCAGGATGTCATGTTAA
ATAATTAAAACTTAAATGTGTCATATTGTTTTATTGTTGGATTTAAAAAT
TCTATACCTCTCTTCAATTATTTAACCATTTTAATTGGAAGTAGAGAGAA
AAATTCTAATATGCAAAAGTTATcctgaaatgaaagaaaatgtatttctt
tgaaattatgcttaaaaatttggaaacaatCAACATTATACATTGACACT
TCATCGATTGAGCTAAGGTATTTTACTCAGAAAAGTGACTGTTTACCTGT
CTTCTTTTATTTCAACAGAGGAGTGACATACAAATACCTCAGATCGCTTT
GATTAATTCAAATGATGAACATGTaagtaaatattttctggtACAATTTC
TTTACTGCGTATTCATTATACATTTGTAAAACATAAACTATAATTAAGTA
TAggtattgaaaattttaatctgTTTAGTATCAAATATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNggggggggggggggtacttaggcaaaaatggatgat
gggtatgtgcggacggtaaaggtcggtttttacacctttcaaagtctctc
taagggtcggaagatttttaggaaattttttgatttccagagaaaaattt
gtactaaagtctctctaagggtattacttttttcaaaaatcgaaaaaaag
aattcaaaaagtctctaagggtcaccttttcagcaaaaatcagtctctaa
gggtcggtttttggaggtcctGTCATTACAtgcccctcattcgccaaccc
tagtaccccccgttTATCAAATACATTTTAAAATCTGTACAAAATAATTA
ACAACGAGTGTGTACTTTTCATTATGGGAACATGATCGAGATCTTGTGAG
ATAATCATAGAATATGTACCATCAGCTGTAGTGGATAATTATAATATAAG
ATATTTGAAAGCAATGTAATGCAGTTTATTCATGGTTAAACAtcacactt
ttttttttgattctttctttttcaggttGGAAGAAAGAACAGCACATATA
CCAATAGCAAGTTTTCTGATGAAGATTCTTCCGACTCGTCTAGCGATTCT
GACAATGAAGAGGTATTTTTCTAATATTATGTGAACATTTTGATCGTCAT
GTGTCATCAGTGGTAGTGTATAGTTAAGATGTTTGAAAGCAATGTAATGC
AGTTTATTCATGGTTAAACATCACACtaataattttgattctttcTTGTT
TCAGACTGGAAGAAAGAACAGCACATTTACAAATAGCAAGTTTTCCGATG
AAGATTCTCTCCAGACTTGTCTAGCATTTCTGACAATGAAGAGGTATTTT
TCTAATATTATGTGCGCATTTTGATCGTCATGTGTCATCAGTGGTAGTGT
ATAGCTAAGATGTTTGAAAGCAATGTAATACAGTTTATTCATGGTTATAA
ACATCACACTATTTTtttgattctttctttttcagacTGGAAGAAAGAAC
AGCACATTTACAAATAGCAAGTTTTCTGATGAAGATTCTCCCGACTCGTC
TAGCGATTCTGACAATGAAGAGGTATTTTTCTAATATTATGTGAACATTT
TGATCGTCATGTGTCATCAGCTGTATTGTATAGCTAAGATATTTAAAAGC
AATGTAATGCAGTTTATTCATGGTTACAAACATCAcactattttttttta
ttctttctttttcagacTGGAAGAAAGAACAGCACATATACAAATAGCAA
GTTTTCCGATGAAGACTCTCCAGACTCGTCTAGCGATTCTGACGAAGAGG
TATTTTTCTAATTATGAGAGAACATGATCGATATCCTGAATACTGACATT
AGTGACAGTATTTACATAttaagagaactaattttggcgagtttAGCCGA
ACTAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025048XLOC_025048Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041020-exon-sc0002668-1491911889:17077..17105TCONS_00041020-exon-sc0002668-1491911889:17077..17105Clytia hemisphaericaexon
TCONS_00041020-exon-sc0002668-1510915933:17077..17105TCONS_00041020-exon-sc0002668-1510915933:17077..17105Clytia hemisphaericaexon
TCONS_00041020-exon-sc0002668-1575043694:17077..17105TCONS_00041020-exon-sc0002668-1575043694:17077..17105Clytia hemisphaericaexon
TCONS_00041020-exon-sc0002668-1491911889:17445..17498TCONS_00041020-exon-sc0002668-1491911889:17445..17498Clytia hemisphaericaexon
TCONS_00041020-exon-sc0002668-1510915933:17445..17498TCONS_00041020-exon-sc0002668-1510915933:17445..17498Clytia hemisphaericaexon
TCONS_00041020-exon-sc0002668-1575043694:17445..17498TCONS_00041020-exon-sc0002668-1575043694:17445..17498Clytia hemisphaericaexon
TCONS_00041020-exon-sc0002668-1491911889:18252..18338TCONS_00041020-exon-sc0002668-1491911889:18252..18338Clytia hemisphaericaexon
TCONS_00041020-exon-sc0002668-1510915933:18252..18338TCONS_00041020-exon-sc0002668-1510915933:18252..18338Clytia hemisphaericaexon
TCONS_00041020-exon-sc0002668-1575043694:18252..18338TCONS_00041020-exon-sc0002668-1575043694:18252..18338Clytia hemisphaericaexon
TCONS_00041020-exon-sc0002668-1491911889:18712..18798TCONS_00041020-exon-sc0002668-1491911889:18712..18798Clytia hemisphaericaexon
TCONS_00041020-exon-sc0002668-1510915933:18712..18798TCONS_00041020-exon-sc0002668-1510915933:18712..18798Clytia hemisphaericaexon
TCONS_00041020-exon-sc0002668-1575043694:18712..18798TCONS_00041020-exon-sc0002668-1575043694:18712..18798Clytia hemisphaericaexon
TCONS_00041020-exon-sc0002668-1491911889:18942..19135TCONS_00041020-exon-sc0002668-1491911889:18942..19135Clytia hemisphaericaexon
TCONS_00041020-exon-sc0002668-1510915933:18942..19135TCONS_00041020-exon-sc0002668-1510915933:18942..19135Clytia hemisphaericaexon
TCONS_00041020-exon-sc0002668-1575043694:18942..19135TCONS_00041020-exon-sc0002668-1575043694:18942..19135Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002668supercontigsc0002668:17077..19135 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.458711	0	0	0	0	2.49555	0.188198	0	0.883468	0	0	0	0	0	0	0	0	0	0	0.675678	0.123164	0	0	0	0	0	1.17733
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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