TCONS_00041001 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041001
Unique NameTCONS_00041001
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length823

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041001 ID=TCONS_00041001|Name=TCONS_00041001|organism=Clytia hemisphaerica|type=transcript|length=823bp
AGAATGGCTATCTATAAATCAATTATCATCCATGATGACCACATTGGCGG
GAGATGCTTGATCAGTTGGAATTCATCATTCACAATTTTCTCACAGACGG
AAGTATGAAGATTTGAGTGATGAAGAAACAGGAAGAATATCAAAGTTGGT
CAGTCAAAATTCACCAAGACgtccaaagttttaaaattgatcGCAAGCAA
AGAAAACAgcatgaaatttcaaaaaatggaagcATGGTCactaaagaaaa
agtaaagccaGGACTTCACATCTCATCAAGATTCCAGCCTCCACAAACCA
GTATTCACATCAATATCAACGTAACGAGAGGGAGCTTACTTTCCATCGGA
CCATTACAGCGTAGTCATATAGGATGCTTAATTATTGACTGGATGGCATA
GCCCTTGGTAatgaaaatcatcatcatcatcatcatccttcgatctAGGT
CCGATGGAAAATACCCAGgaCAAATTATCTCATTGTCTTCGATGAGGTTT
ACTGTATCAAAGCGATGATATCCCAATTAAAACAAACGTATGGTTTGACT
GTAAAAACCGTCAAAAACAGCTTGAAAGAATTATGatgaGAAAATTGTTG
TTTGTCCAGTTTCGCGCCCAAAAAATCCATGAAATGTTTGCTGCAGAATC
AGAAGAAGTTGAAGAAAGTGCTGTCTGAGGAGGTTCACCTTGCAGAAGAT
AATGTTCTCATTCATCCAATATTTCTTCAAACTGTCCAATCACGGAGCTC
TGCTCTTCCTATCATCCATCAGTCACGAAACGTCATCAGTCATCAAATGA
GAAAGTCCTCAGTAAGCTGGTAC
Run BLAST on NCBI

transcript from alignment at sc0002659:12014..15667+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041001 ID=TCONS_00041001|Name=TCONS_00041001|organism=Clytia hemisphaerica|type=transcript|length=3654bp|location=Sequence derived from alignment at sc0002659:12014..15667+ (Clytia hemisphaerica)
AGAATGGCTATCTATAAATCAATTATCATCCATGATGACCACATTGGCGG
TgatcctttttttattttgatcctTTACAGTTTGAACTCACTGCATACTT
TGCAATCTTTCCAATTATGCAGGGAAATATTTGGATTGCATGCTGTCAAG
AGCTTAAGTATTCTACCTCTCTTTTACCACCGTCCACATGTTTTTACTTG
ACATGCAAAAAAGCTCTCCTTAACTGAGACCTTAATCCTATAAAAGCAGC
TGGTACAATCGAAAGACCATGATCTGAGCCTAGATTACTTAGTAAAAGAC
TGAATTTACTGTTTTATGCTCCAAAGCAACTCTTTGGGTTTTCAAAATGC
CCCAAGACAGGGGGGGTGCTATTTGTAGCTTTAATAAGTAAGTGCACTTT
TCCTGCATGGCATAACTTatattttttgcacttttttggacacaaataag
tttctttttccAGGGAGATGCTTGATCAGTTGGAATTCATCATTCACAAT
TTTCTCACAGACGGAAGTATGAAGATTTGAGTGATGAAGAAACAGGTACA
GGTCTTTGTATAATGTGTTTTGTTATAATATTGAGGTACCACTAAATTTT
GACTCAGCCCAAGCTCTTCTCTTAATAGATTTAAAATTTACTTACAGTAC
AATGATTTCTATTACATCTAGCCTCGATATCCAGACTTTTTTGGACAGTC
TAGTTGAAGTATTTTTATCTATGGTTTACGGTCTGATTTACCTAGATCCT
CTGCATTCAAATCTGTGGATGTAAGTGATTGTTCGATGGCTGCAAGATAT
AACCTTAGGATGTTGAGGTTCTTCGACAAACAGTTTTCAATAAGATGATA
GATATTAATCACTCTAAGACTGAAAATGGCTTTAGAGAATTAATTGAAAC
TAGCATCATCTTAAGTAATCATCCAAACCTGGTGGAACGACCGTAAAAGT
GGAGGGGCTGAAGGCTAATATTAGTCAAATTTTGCTtggaaattgagaaa
aaagtagaTTTCGATATTAAAGCATCCCCGCTTTCCCCCAAGCCTGTCCT
CTGGAGCCAAATTTCAACCTATAATAGAGGTCACGTCCTGTTCAAGTTGC
ACATCTTATAACACAgcattaaagggacataacagtacttgcgaaaattg
taaacaaactgtatgcagcggatacaaaatcaaaacaaatgtcacatgtc
agaatataaaaatcaaaccaaatatggctaattttgattgttcaattgtt
tatTACAAGTTtcttttggacacgtgattttaattgttctctttaatgac
acgtggttcgcgcaatgtttacatctTACTactttatgtccctttaaact
aTAACCATTCAATGATATGATAAACAATAATGAGTAACATGTATctcgtt
ttaaatttttcgtctTATAGGAAGAATATCAAAGTTGGTCAGTCAAAATT
CACCAAGACgtccaaagttttaaaattgatcGCAAGCAAAGAAAACAgca
tgaaatttcaaaaaatggaagcATGGTCactaaagaaaaagtaaagccaG
GACTTCACATCTCATCAAGGTCTCAGATAGTTTCATATAAACTAAATGAA
AATCATGATGTCCAAAATCTGATTGataaaatgattttattgaagTTTAT
CAGCTGTTTTGTTCTCTATTTTAATCAGTTTGAATAAATAAACAACATAC
CTCCCACCACACAATTTTCATCTTCCCACCAAGTTTCCATTATTATTACT
AAGcaaatttttaaattcattcAAGTGTTTCAAGGTATATAAGTATTCAT
TGATATTAACTTTAGATTCCAGCCTCCACAAACCAGTATTCACATCAATA
TCAACGTAACGAGAGGGAGCTTACTTTCCATCGGACCATTACAGCGTAGT
CATATAGGATGCTTAATTATTGACTGGATGGCATAGCCCTTGGTAatgaa
aatcatcatcatcatcatcatccttcgatctAGGTCCGATGGAAAATACC
CAGGTACGACAATTGAAATCACGGGCAaatgtttttatctttgtgTATCC
TTACTATGTTTCTTTTAAAGgttaaaagcttttttctatttttcagaaga
TTACTAAACAAAGGTTTTCGTATCAGTGTACAGAATTATTGAACCATCAG
TGGTAGTTTGTATTGACCCTAAAGAATATTTTGTTTCTGGTCCAGCTTGA
AAATTGTCGTAACCTGGCcgaattttttctctttgaactttccaaatgtt
ttcaaaatttcccattttaacattttctacACACACACACAAGTGATCTA
AAACAATCTTTCCACATTTTTCATTTCGTACTCCTTCAATCCCAATTTCA
TGggcttttcttttcaaattttaattgaaatctcatttttttaattatcg
atataaaaaatttgatatatGATATCATGACAACACATGAAATTATGAGA
ATCTTTTTTGTGAGTATAAAAggttttccattgtattttccgATTAACTA
AGGATAAGCTGATGTAGGAGTATTTGATTTTGTTAAtacttttcatttca
tttttaggaCAAATTATCTCATTGTCTTCGATGAGGTTTACTGTATCAAA
GCGATGATATCCCAATTAAAACAAACGTATGGTTTGACTGTAAAAACCGT
CAAAAACAGCTTGAAAGAATTATGGTACAAGTCTCCCTTATATTTCATAA
TAACAGAAACAATTTCTAACTGTATGTTTGATCTCTAATAATTTCATCAA
TATCATCATATTCATCTTTATTGAACTACATGGGGTCTCCCAAGTTTACA
CACAACGTCATTTTCTTGGTTGTTAaactttttggaagaaaattCATATG
CTGGGGAGTGACGTTTTTCtagaagattttattttcacttattGAGAATT
GTCCATGGGaatgaaattaatttattttgattttatttttttagatgaGA
AAATTGTTGTTTGTCCAGTTTCGCGCCCAAAAAATCCATGAAATGTTTGC
TGCAGAATCAGAAGAAGTTGAAGAAAGTGCTGTCTGAGGGTAAGGAATTA
ATTTTACGAAATTGCTTGCGCTGTAAGAAATTAAATTGATTACAATATTT
TGGTCACACTTTTCTCATGAAATCGATCAGAATCAATCTGGATGAATTCT
GCATAAAAGGGAACTATGTTAAGATTCATCGCATGTTTGAATGACCTTAA
AGGTCTGAAACATTTAAATTGACTCGAAATCTTTTGTCTTTGGACTATTG
GATGCAATCCTCTGTTAAAGTTGATAGGTGTATGAGAAATTTCACGATCG
CAATGAATCTCGCTCAAAATTGATTTAAGGTTTGAAAGTCTTCTCAATGA
CAAAAGTGAATTTACTATTACAGAGCAACTAGTCTCGATTCCCCCTGATT
TATTGATTcattcaattctgttttgattattatttttgctTATTACCTAT
AGAGGTTCACCTTGCAGAAGATAATNTTGTTTTGATTACTATTTTTGCTT
ATTACCTATAGAGGTTCACCTTGCAGAAGATAATGTTCTCATTCATCCAA
TATTTCTTCAAACTGTCCAATCACGGAGCTCTGCTCTTCCTATCATCCAT
CAGTCACGAAACGTCATCAGTCATCAAATGAGAAAGTCCTCAGTAAGCTG
GTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025034XLOC_025034Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041001-exon-sc0002659-1491911889:12014..12062TCONS_00041001-exon-sc0002659-1491911889:12014..12062Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1510915933:12014..12062TCONS_00041001-exon-sc0002659-1510915933:12014..12062Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1575043694:12014..12062TCONS_00041001-exon-sc0002659-1575043694:12014..12062Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1491911889:12477..12558TCONS_00041001-exon-sc0002659-1491911889:12477..12558Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1510915933:12477..12558TCONS_00041001-exon-sc0002659-1510915933:12477..12558Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1575043694:12477..12558TCONS_00041001-exon-sc0002659-1575043694:12477..12558Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1491911889:13434..13582TCONS_00041001-exon-sc0002659-1491911889:13434..13582Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1510915933:13434..13582TCONS_00041001-exon-sc0002659-1510915933:13434..13582Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1575043694:13434..13582TCONS_00041001-exon-sc0002659-1575043694:13434..13582Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1491911889:13829..14016TCONS_00041001-exon-sc0002659-1491911889:13829..14016Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1510915933:13829..14016TCONS_00041001-exon-sc0002659-1510915933:13829..14016Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1575043694:13829..14016TCONS_00041001-exon-sc0002659-1575043694:13829..14016Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1491911889:14571..14687TCONS_00041001-exon-sc0002659-1491911889:14571..14687Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1510915933:14571..14687TCONS_00041001-exon-sc0002659-1510915933:14571..14687Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1575043694:14571..14687TCONS_00041001-exon-sc0002659-1575043694:14571..14687Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1491911889:14958..15052TCONS_00041001-exon-sc0002659-1491911889:14958..15052Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1510915933:14958..15052TCONS_00041001-exon-sc0002659-1510915933:14958..15052Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1575043694:14958..15052TCONS_00041001-exon-sc0002659-1575043694:14958..15052Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1491911889:15525..15667TCONS_00041001-exon-sc0002659-1491911889:15525..15667Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1510915933:15525..15667TCONS_00041001-exon-sc0002659-1510915933:15525..15667Clytia hemisphaericaexon
TCONS_00041001-exon-sc0002659-1575043694:15525..15667TCONS_00041001-exon-sc0002659-1575043694:15525..15667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002659supercontigsc0002659:12014..15667 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.477899	0	0.647954	1.57205	0.00302483	0	0	0	1.32357	0	0.000245517	0.966615	0.000342346	0.812862	1.45646	0.917674	1.13011	0	0.817072	0	0	0	0.652413	0	0	0.195781	0	0.908794	0.761669
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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