TCONS_00041000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041000
Unique NameTCONS_00041000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length760

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041000 ID=TCONS_00041000|Name=TCONS_00041000|organism=Clytia hemisphaerica|type=transcript|length=760bp
TGTCATTTATTACATCAACAAGGGAGATGCTTGATCAGTTGGAATTCATC
ATTCACAATTTTCTCACAGACGGAAGTATGAAGATTTGAGTGATGAAGAA
ACAGGAAGAATATCAAAGTTGGTCAGTCAAAATTCACCAAGACgtccaaa
gttttaaaattgatcGCAAGCAAAGAAAACAgcatgaaatttcaaaaaat
ggaagcATGGTCactaaagaaaaaCCTCCACAAACCAGTATTCACATCAA
TATCAACGTAACGAGAGGGAGCTTACTTTCCATCGGACCATTACAGCGTA
GTCATATAGGATGCTTAATTATTGACTGGATGGCATAGCCCTTGGTAatg
aaaatcatcatcatcatcatcatccttcgatctAGGTCCGATGGAAAATA
CCCAGgaCAAATTATCTCATTGTCTTCGATGAGGTTTACTGTATCAAAGC
GATGATATCCCAATTAAAACAAACGTATGGTTTGACTGTAAAAACCGTCA
AAAACAGCTTGAAAGAATTATGatgaGAAAATTGTTGTTTGTCCAGTTTC
GCGCCCAAAAAATCCATGAAATGTTTGCTGCAGAATCAGAAGAAGTTGAA
GAAAGTGCTGTCTGAGGAGGTTCACCTTGCAGAAGATAATGTTCTCATTC
ATCCAATATTTCTTCAAACTGTCCAATCACGGAGCTCTGCTCTTCCTATC
ATCCATCAGTCACGAAACGTCATCAGTCATCAAATGAGAAAGTCCTCAGT
AAGCTGGTAC
Run BLAST on NCBI

transcript from alignment at sc0002659:11984..15667+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041000 ID=TCONS_00041000|Name=TCONS_00041000|organism=Clytia hemisphaerica|type=transcript|length=3684bp|location=Sequence derived from alignment at sc0002659:11984..15667+ (Clytia hemisphaerica)
TGTCATTTATTACATCAACAAGGTAATCCAAGAATGGCTATCTATAAATC
AATTATCATCCATGATGACCACATTGGCGGTgatcctttttttattttga
tcctTTACAGTTTGAACTCACTGCATACTTTGCAATCTTTCCAATTATGC
AGGGAAATATTTGGATTGCATGCTGTCAAGAGCTTAAGTATTCTACCTCT
CTTTTACCACCGTCCACATGTTTTTACTTGACATGCAAAAAAGCTCTCCT
TAACTGAGACCTTAATCCTATAAAAGCAGCTGGTACAATCGAAAGACCAT
GATCTGAGCCTAGATTACTTAGTAAAAGACTGAATTTACTGTTTTATGCT
CCAAAGCAACTCTTTGGGTTTTCAAAATGCCCCAAGACAGGGGGGGTGCT
ATTTGTAGCTTTAATAAGTAAGTGCACTTTTCCTGCATGGCATAACTTat
attttttgcacttttttggacacaaataagtttctttttccAGGGAGATG
CTTGATCAGTTGGAATTCATCATTCACAATTTTCTCACAGACGGAAGTAT
GAAGATTTGAGTGATGAAGAAACAGGTACAGGTCTTTGTATAATGTGTTT
TGTTATAATATTGAGGTACCACTAAATTTTGACTCAGCCCAAGCTCTTCT
CTTAATAGATTTAAAATTTACTTACAGTACAATGATTTCTATTACATCTA
GCCTCGATATCCAGACTTTTTTGGACAGTCTAGTTGAAGTATTTTTATCT
ATGGTTTACGGTCTGATTTACCTAGATCCTCTGCATTCAAATCTGTGGAT
GTAAGTGATTGTTCGATGGCTGCAAGATATAACCTTAGGATGTTGAGGTT
CTTCGACAAACAGTTTTCAATAAGATGATAGATATTAATCACTCTAAGAC
TGAAAATGGCTTTAGAGAATTAATTGAAACTAGCATCATCTTAAGTAATC
ATCCAAACCTGGTGGAACGACCGTAAAAGTGGAGGGGCTGAAGGCTAATA
TTAGTCAAATTTTGCTtggaaattgagaaaaaagtagaTTTCGATATTAA
AGCATCCCCGCTTTCCCCCAAGCCTGTCCTCTGGAGCCAAATTTCAACCT
ATAATAGAGGTCACGTCCTGTTCAAGTTGCACATCTTATAACACAgcatt
aaagggacataacagtacttgcgaaaattgtaaacaaactgtatgcagcg
gatacaaaatcaaaacaaatgtcacatgtcagaatataaaaatcaaacca
aatatggctaattttgattgttcaattgtttatTACAAGTTtcttttgga
cacgtgattttaattgttctctttaatgacacgtggttcgcgcaatgttt
acatctTACTactttatgtccctttaaactaTAACCATTCAATGATATGA
TAAACAATAATGAGTAACATGTATctcgttttaaatttttcgtctTATAG
GAAGAATATCAAAGTTGGTCAGTCAAAATTCACCAAGACgtccaaagttt
taaaattgatcGCAAGCAAAGAAAACAgcatgaaatttcaaaaaatggaa
gcATGGTCactaaagaaaaagtaaagccaGGACTTCACATCTCATCAAGG
TCTCAGATAGTTTCATATAAACTAAATGAAAATCATGATGTCCAAAATCT
GATTGataaaatgattttattgaagTTTATCAGCTGTTTTGTTCTCTATT
TTAATCAGTTTGAATAAATAAACAACATACCTCCCACCACACAATTTTCA
TCTTCCCACCAAGTTTCCATTATTATTACTAAGcaaatttttaaattcat
tcAAGTGTTTCAAGGTATATAAGTATTCATTGATATTAACTTTAGATTCC
AGCCTCCACAAACCAGTATTCACATCAATATCAACGTAACGAGAGGGAGC
TTACTTTCCATCGGACCATTACAGCGTAGTCATATAGGATGCTTAATTAT
TGACTGGATGGCATAGCCCTTGGTAatgaaaatcatcatcatcatcatca
tccttcgatctAGGTCCGATGGAAAATACCCAGGTACGACAATTGAAATC
ACGGGCAaatgtttttatctttgtgTATCCTTACTATGTTTCTTTTAAAG
gttaaaagcttttttctatttttcagaagaTTACTAAACAAAGGTTTTCG
TATCAGTGTACAGAATTATTGAACCATCAGTGGTAGTTTGTATTGACCCT
AAAGAATATTTTGTTTCTGGTCCAGCTTGAAAATTGTCGTAACCTGGCcg
aattttttctctttgaactttccaaatgttttcaaaatttcccattttaa
cattttctacACACACACACAAGTGATCTAAAACAATCTTTCCACATTTT
TCATTTCGTACTCCTTCAATCCCAATTTCATGggcttttcttttcaaatt
ttaattgaaatctcatttttttaattatcgatataaaaaatttgatatat
GATATCATGACAACACATGAAATTATGAGAATCTTTTTTGTGAGTATAAA
AggttttccattgtattttccgATTAACTAAGGATAAGCTGATGTAGGAG
TATTTGATTTTGTTAAtacttttcatttcatttttaggaCAAATTATCTC
ATTGTCTTCGATGAGGTTTACTGTATCAAAGCGATGATATCCCAATTAAA
ACAAACGTATGGTTTGACTGTAAAAACCGTCAAAAACAGCTTGAAAGAAT
TATGGTACAAGTCTCCCTTATATTTCATAATAACAGAAACAATTTCTAAC
TGTATGTTTGATCTCTAATAATTTCATCAATATCATCATATTCATCTTTA
TTGAACTACATGGGGTCTCCCAAGTTTACACACAACGTCATTTTCTTGGT
TGTTAaactttttggaagaaaattCATATGCTGGGGAGTGACGTTTTTCt
agaagattttattttcacttattGAGAATTGTCCATGGGaatgaaattaa
tttattttgattttatttttttagatgaGAAAATTGTTGTTTGTCCAGTT
TCGCGCCCAAAAAATCCATGAAATGTTTGCTGCAGAATCAGAAGAAGTTG
AAGAAAGTGCTGTCTGAGGGTAAGGAATTAATTTTACGAAATTGCTTGCG
CTGTAAGAAATTAAATTGATTACAATATTTTGGTCACACTTTTCTCATGA
AATCGATCAGAATCAATCTGGATGAATTCTGCATAAAAGGGAACTATGTT
AAGATTCATCGCATGTTTGAATGACCTTAAAGGTCTGAAACATTTAAATT
GACTCGAAATCTTTTGTCTTTGGACTATTGGATGCAATCCTCTGTTAAAG
TTGATAGGTGTATGAGAAATTTCACGATCGCAATGAATCTCGCTCAAAAT
TGATTTAAGGTTTGAAAGTCTTCTCAATGACAAAAGTGAATTTACTATTA
CAGAGCAACTAGTCTCGATTCCCCCTGATTTATTGATTcattcaattctg
ttttgattattatttttgctTATTACCTATAGAGGTTCACCTTGCAGAAG
ATAATNTTGTTTTGATTACTATTTTTGCTTATTACCTATAGAGGTTCACC
TTGCAGAAGATAATGTTCTCATTCATCCAATATTTCTTCAAACTGTCCAA
TCACGGAGCTCTGCTCTTCCTATCATCCATCAGTCACGAAACGTCATCAG
TCATCAAATGAGAAAGTCCTCAGTAAGCTGGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025034XLOC_025034Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041000-exon-sc0002659-1491911889:11984..12005TCONS_00041000-exon-sc0002659-1491911889:11984..12005Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1510915933:11984..12005TCONS_00041000-exon-sc0002659-1510915933:11984..12005Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1575043694:11984..12005TCONS_00041000-exon-sc0002659-1575043694:11984..12005Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1491911889:12477..12558TCONS_00041000-exon-sc0002659-1491911889:12477..12558Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1510915933:12477..12558TCONS_00041000-exon-sc0002659-1510915933:12477..12558Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1575043694:12477..12558TCONS_00041000-exon-sc0002659-1575043694:12477..12558Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1491911889:13434..13553TCONS_00041000-exon-sc0002659-1491911889:13434..13553Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1510915933:13434..13553TCONS_00041000-exon-sc0002659-1510915933:13434..13553Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1575043694:13434..13553TCONS_00041000-exon-sc0002659-1575043694:13434..13553Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1491911889:13836..14016TCONS_00041000-exon-sc0002659-1491911889:13836..14016Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1510915933:13836..14016TCONS_00041000-exon-sc0002659-1510915933:13836..14016Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1575043694:13836..14016TCONS_00041000-exon-sc0002659-1575043694:13836..14016Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1491911889:14571..14687TCONS_00041000-exon-sc0002659-1491911889:14571..14687Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1510915933:14571..14687TCONS_00041000-exon-sc0002659-1510915933:14571..14687Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1575043694:14571..14687TCONS_00041000-exon-sc0002659-1575043694:14571..14687Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1491911889:14958..15052TCONS_00041000-exon-sc0002659-1491911889:14958..15052Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1510915933:14958..15052TCONS_00041000-exon-sc0002659-1510915933:14958..15052Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1575043694:14958..15052TCONS_00041000-exon-sc0002659-1575043694:14958..15052Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1491911889:15525..15667TCONS_00041000-exon-sc0002659-1491911889:15525..15667Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1510915933:15525..15667TCONS_00041000-exon-sc0002659-1510915933:15525..15667Clytia hemisphaericaexon
TCONS_00041000-exon-sc0002659-1575043694:15525..15667TCONS_00041000-exon-sc0002659-1575043694:15525..15667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002659supercontigsc0002659:11984..15667 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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