TCONS_00040999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040999
Unique NameTCONS_00040999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040999 ID=TCONS_00040999|Name=TCONS_00040999|organism=Clytia hemisphaerica|type=transcript|length=783bp
ATTATACTAGAAGACGTGTCATTTATTACATCAACAAGGGAGATGCTTGA
TCAGTTGGAATTCATCATTCACAATTTTCTCACAGACGGAAGTATGAAGA
TTTGAGTGATGAAGAAACAGGAAGAATATCAAAGTTGGTCAGTCAAAATT
CACCAAGACgtccaaagttttaaaattgatcGCAAGCAAAGAAAACAgca
tgaaatttcaaaaaatggaagcATGGTCactaaagaaaaaATTCCAGCCT
CCACAAACCAGTATTCACATCAATATCAACGTAACGAGAGGGAGCTTACT
TTCCATCGGACCATTACAGCGTAGTCATATAGGATGCTTAATTATTGACT
GGATGGCATAGCCCTTGGTAatgaaaatcatcatcatcatcatcatcctt
cgatctAGGTCCGATGGAAAATACCCAGgaCAAATTATCTCATTGTCTTC
GATGAGGTTTACTGTATCAAAGCGATGATATCCCAATTAAAACAAACGTA
TGGTTTGACTGTAAAAACCGTCAAAAACAGCTTGAAAGAATTATGatgaG
AAAATTGTTGTTTGTCCAGTTTCGCGCCCAAAAAATCCATGAAATGTTTG
CTGCAGAATCAGAAGAAGTTGAAGAAAGTGCTGTCTGAGGAGGTTCACCT
TGCAGAAGATAATGTTCTCATTCATCCAATATTTCTTCAAACTGTCCAAT
CACGGAGCTCTGCTCTTCCTATCATCCATCAGTCACGAAACGTCATCAGT
CATCAAATGAGAAAGTCCTCAGTAAGCTGGTAC
Run BLAST on NCBI

transcript from alignment at sc0002659:11968..15667+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040999 ID=TCONS_00040999|Name=TCONS_00040999|organism=Clytia hemisphaerica|type=transcript|length=3700bp|location=Sequence derived from alignment at sc0002659:11968..15667+ (Clytia hemisphaerica)
ATTATACTAGAAGACGTGTCATTTATTACATCAACAAGGTAATCCAAGAA
TGGCTATCTATAAATCAATTATCATCCATGATGACCACATTGGCGGTgat
cctttttttattttgatcctTTACAGTTTGAACTCACTGCATACTTTGCA
ATCTTTCCAATTATGCAGGGAAATATTTGGATTGCATGCTGTCAAGAGCT
TAAGTATTCTACCTCTCTTTTACCACCGTCCACATGTTTTTACTTGACAT
GCAAAAAAGCTCTCCTTAACTGAGACCTTAATCCTATAAAAGCAGCTGGT
ACAATCGAAAGACCATGATCTGAGCCTAGATTACTTAGTAAAAGACTGAA
TTTACTGTTTTATGCTCCAAAGCAACTCTTTGGGTTTTCAAAATGCCCCA
AGACAGGGGGGGTGCTATTTGTAGCTTTAATAAGTAAGTGCACTTTTCCT
GCATGGCATAACTTatattttttgcacttttttggacacaaataagtttc
tttttccAGGGAGATGCTTGATCAGTTGGAATTCATCATTCACAATTTTC
TCACAGACGGAAGTATGAAGATTTGAGTGATGAAGAAACAGGTACAGGTC
TTTGTATAATGTGTTTTGTTATAATATTGAGGTACCACTAAATTTTGACT
CAGCCCAAGCTCTTCTCTTAATAGATTTAAAATTTACTTACAGTACAATG
ATTTCTATTACATCTAGCCTCGATATCCAGACTTTTTTGGACAGTCTAGT
TGAAGTATTTTTATCTATGGTTTACGGTCTGATTTACCTAGATCCTCTGC
ATTCAAATCTGTGGATGTAAGTGATTGTTCGATGGCTGCAAGATATAACC
TTAGGATGTTGAGGTTCTTCGACAAACAGTTTTCAATAAGATGATAGATA
TTAATCACTCTAAGACTGAAAATGGCTTTAGAGAATTAATTGAAACTAGC
ATCATCTTAAGTAATCATCCAAACCTGGTGGAACGACCGTAAAAGTGGAG
GGGCTGAAGGCTAATATTAGTCAAATTTTGCTtggaaattgagaaaaaag
tagaTTTCGATATTAAAGCATCCCCGCTTTCCCCCAAGCCTGTCCTCTGG
AGCCAAATTTCAACCTATAATAGAGGTCACGTCCTGTTCAAGTTGCACAT
CTTATAACACAgcattaaagggacataacagtacttgcgaaaattgtaaa
caaactgtatgcagcggatacaaaatcaaaacaaatgtcacatgtcagaa
tataaaaatcaaaccaaatatggctaattttgattgttcaattgtttatT
ACAAGTTtcttttggacacgtgattttaattgttctctttaatgacacgt
ggttcgcgcaatgtttacatctTACTactttatgtccctttaaactaTAA
CCATTCAATGATATGATAAACAATAATGAGTAACATGTATctcgttttaa
atttttcgtctTATAGGAAGAATATCAAAGTTGGTCAGTCAAAATTCACC
AAGACgtccaaagttttaaaattgatcGCAAGCAAAGAAAACAgcatgaa
atttcaaaaaatggaagcATGGTCactaaagaaaaagtaaagccaGGACT
TCACATCTCATCAAGGTCTCAGATAGTTTCATATAAACTAAATGAAAATC
ATGATGTCCAAAATCTGATTGataaaatgattttattgaagTTTATCAGC
TGTTTTGTTCTCTATTTTAATCAGTTTGAATAAATAAACAACATACCTCC
CACCACACAATTTTCATCTTCCCACCAAGTTTCCATTATTATTACTAAGc
aaatttttaaattcattcAAGTGTTTCAAGGTATATAAGTATTCATTGAT
ATTAACTTTAGATTCCAGCCTCCACAAACCAGTATTCACATCAATATCAA
CGTAACGAGAGGGAGCTTACTTTCCATCGGACCATTACAGCGTAGTCATA
TAGGATGCTTAATTATTGACTGGATGGCATAGCCCTTGGTAatgaaaatc
atcatcatcatcatcatccttcgatctAGGTCCGATGGAAAATACCCAGG
TACGACAATTGAAATCACGGGCAaatgtttttatctttgtgTATCCTTAC
TATGTTTCTTTTAAAGgttaaaagcttttttctatttttcagaagaTTAC
TAAACAAAGGTTTTCGTATCAGTGTACAGAATTATTGAACCATCAGTGGT
AGTTTGTATTGACCCTAAAGAATATTTTGTTTCTGGTCCAGCTTGAAAAT
TGTCGTAACCTGGCcgaattttttctctttgaactttccaaatgttttca
aaatttcccattttaacattttctacACACACACACAAGTGATCTAAAAC
AATCTTTCCACATTTTTCATTTCGTACTCCTTCAATCCCAATTTCATGgg
cttttcttttcaaattttaattgaaatctcatttttttaattatcgatat
aaaaaatttgatatatGATATCATGACAACACATGAAATTATGAGAATCT
TTTTTGTGAGTATAAAAggttttccattgtattttccgATTAACTAAGGA
TAAGCTGATGTAGGAGTATTTGATTTTGTTAAtacttttcatttcatttt
taggaCAAATTATCTCATTGTCTTCGATGAGGTTTACTGTATCAAAGCGA
TGATATCCCAATTAAAACAAACGTATGGTTTGACTGTAAAAACCGTCAAA
AACAGCTTGAAAGAATTATGGTACAAGTCTCCCTTATATTTCATAATAAC
AGAAACAATTTCTAACTGTATGTTTGATCTCTAATAATTTCATCAATATC
ATCATATTCATCTTTATTGAACTACATGGGGTCTCCCAAGTTTACACACA
ACGTCATTTTCTTGGTTGTTAaactttttggaagaaaattCATATGCTGG
GGAGTGACGTTTTTCtagaagattttattttcacttattGAGAATTGTCC
ATGGGaatgaaattaatttattttgattttatttttttagatgaGAAAAT
TGTTGTTTGTCCAGTTTCGCGCCCAAAAAATCCATGAAATGTTTGCTGCA
GAATCAGAAGAAGTTGAAGAAAGTGCTGTCTGAGGGTAAGGAATTAATTT
TACGAAATTGCTTGCGCTGTAAGAAATTAAATTGATTACAATATTTTGGT
CACACTTTTCTCATGAAATCGATCAGAATCAATCTGGATGAATTCTGCAT
AAAAGGGAACTATGTTAAGATTCATCGCATGTTTGAATGACCTTAAAGGT
CTGAAACATTTAAATTGACTCGAAATCTTTTGTCTTTGGACTATTGGATG
CAATCCTCTGTTAAAGTTGATAGGTGTATGAGAAATTTCACGATCGCAAT
GAATCTCGCTCAAAATTGATTTAAGGTTTGAAAGTCTTCTCAATGACAAA
AGTGAATTTACTATTACAGAGCAACTAGTCTCGATTCCCCCTGATTTATT
GATTcattcaattctgttttgattattatttttgctTATTACCTATAGAG
GTTCACCTTGCAGAAGATAATNTTGTTTTGATTACTATTTTTGCTTATTA
CCTATAGAGGTTCACCTTGCAGAAGATAATGTTCTCATTCATCCAATATT
TCTTCAAACTGTCCAATCACGGAGCTCTGCTCTTCCTATCATCCATCAGT
CACGAAACGTCATCAGTCATCAAATGAGAAAGTCCTCAGTAAGCTGGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025034XLOC_025034Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040999-exon-sc0002659-1491911889:11968..12005TCONS_00040999-exon-sc0002659-1491911889:11968..12005Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1510915933:11968..12005TCONS_00040999-exon-sc0002659-1510915933:11968..12005Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1575043694:11968..12005TCONS_00040999-exon-sc0002659-1575043694:11968..12005Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1491911889:12477..12558TCONS_00040999-exon-sc0002659-1491911889:12477..12558Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1510915933:12477..12558TCONS_00040999-exon-sc0002659-1510915933:12477..12558Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1575043694:12477..12558TCONS_00040999-exon-sc0002659-1575043694:12477..12558Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1491911889:13434..13553TCONS_00040999-exon-sc0002659-1491911889:13434..13553Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1510915933:13434..13553TCONS_00040999-exon-sc0002659-1510915933:13434..13553Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1575043694:13434..13553TCONS_00040999-exon-sc0002659-1575043694:13434..13553Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1491911889:13829..14016TCONS_00040999-exon-sc0002659-1491911889:13829..14016Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1510915933:13829..14016TCONS_00040999-exon-sc0002659-1510915933:13829..14016Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1575043694:13829..14016TCONS_00040999-exon-sc0002659-1575043694:13829..14016Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1491911889:14571..14687TCONS_00040999-exon-sc0002659-1491911889:14571..14687Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1510915933:14571..14687TCONS_00040999-exon-sc0002659-1510915933:14571..14687Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1575043694:14571..14687TCONS_00040999-exon-sc0002659-1575043694:14571..14687Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1491911889:14958..15052TCONS_00040999-exon-sc0002659-1491911889:14958..15052Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1510915933:14958..15052TCONS_00040999-exon-sc0002659-1510915933:14958..15052Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1575043694:14958..15052TCONS_00040999-exon-sc0002659-1575043694:14958..15052Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1491911889:15525..15667TCONS_00040999-exon-sc0002659-1491911889:15525..15667Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1510915933:15525..15667TCONS_00040999-exon-sc0002659-1510915933:15525..15667Clytia hemisphaericaexon
TCONS_00040999-exon-sc0002659-1575043694:15525..15667TCONS_00040999-exon-sc0002659-1575043694:15525..15667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002659supercontigsc0002659:11968..15667 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.407235	0	0	0.820792	0.868307	0	0	0.839714	0.205442	0.655464	0	0	0	0	0	0	0.430278	0	0	0	0	0	0.000393052	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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