TCONS_00040962 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040962
Unique NameTCONS_00040962
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040962 ID=TCONS_00040962|Name=TCONS_00040962|organism=Clytia hemisphaerica|type=transcript|length=2473bp
CACAAAGTTCACAATGCTGTTAAAGTGTTTTGCAAACCCTTCAAACAACA
CATTGAAAGTTTATGGCGTGATATTCACAATGACGTCAAGTTCAGTGCGG
ATATTAAGCAAGCTCTCCAACATATTTGTCTTATCATTGGTTCTGAATAC
CACAAGCCTAGCGAACCAGTTGCACATCGGTGGTTATCATCATATAATTC
AACAACCCAAAATTATCCTATGTTTAGTGCACTCTGGTTGTTGTATTTCA
GTTGGATGACCAAAGAAGATCGCCTTCTTTACAAAGATGAGAAAGAACTA
CTCACAGTTGATGCCAGCAAGGAAGGCAAACAAAATATCATTGAAATTCA
AAGCACAATGCGAAAGAAAGGTCTAACTAAAAAAGGCAAGGAACGAAAAC
AACGCATCTTTGGAAAATTGATACATAGATGTGACATGACTAAGCTTGTG
GCTGAATTCTATCAAGCAGTGCTTCCTTTGTTCAAATCTTTTGTCCTGAT
CTTTCAACAGAAGTCACCACAAGTGCATAGACTTCATAGCAGTATTTCCT
CTGTCACTCGCGAATTCTTTGCATGTTTCATGGAGCACAGCACTATCAAA
GGTATATCTATTCTTTTCCAAAATGGTTGATATCCTTAAAATGCATATCT
CTAACTTCTTTTGACCCGGATATCTAAATGATTTGATTTCACCAGTAAGA
TATTTTGGCAAATCAGTCTGTTTAAAGCTACTTTTAAGGGTTAGAAATTA
AAGAATTGTGTTTAGGATTTGATTTCATGACATTCCCTAAAGAAAATGAA
TCGAATTCTTTTTAAAGGTCTCACCGGGTCAAAGCTTCAGAAAGTTGACG
TGAAGGGAAATTTACGAAAAAGCAAGCACATCTATACAGGCACAATGACG
AGAACGCTCggtaagaaattaaaagaagaaaaaaagattgagACTCTCAA
CGAATTCAAAGCATGTGTTAAGGAAGCCTACGTTGAAACAGCAATGTACA
TACAGAAGAACTTTCCATTATCTAATCGTGTTTTACAATGCTTGGCTGGG
CTTGATCCTAACCACATCGTATCTGGAAAGTCTTACATTCACCTTAAAAC
CCTTTCCGACTTCTTTCCCACAATCCTTGGCAGCGAAGAAGATCGAGAAT
TGTATCTAAATGAAGTTTCCCGCATTCAATTGGACGATGGTCTTCCATCA
ACTACCAACGAAGCAGGAAAAGATATTCGTCTTGATCATTGGTGGAACAA
GGTTTTTTTAACCAAGAAATACCCTGTTTTATCGAAAGTAGTGAAAGCTT
GTCTGTCAATTTTTACCGGCCCTCAAGTGGAGTCATCTTTCAGCAAAATG
AATGACATCATCGACCGCAAATCAAACCGCATGAATGTGGAAACTTACGA
TGGTATCATGACCGTAAAATACAGCTTACAGTCGAAATCTTCCTCTGAAA
TTTACCATCGCAAAGACCCCTTGTATGATCCCATCAACTCAAACGCCGTT
TATTTTGTTCGCACTGCAAACGCAAGATATAAAACTCGAATCgccaaaaa
acgtaaagagaAGAGTGATTCCAATAAAGCTTTAGGGGCAAagAAAATTC
CAGTTGAAAGGAAGAAGCAAAGCGTGCACAAAGTTGTTGAAACCATTCGG
GAAGAAATTTGTGAAAAGGTTAAGAAATCCATGAgatcgaaaacaaagaa
aagtTCCACTGTAACAGCAGAATCTGTTTCAAATCCGAAAGAAACCGAGC
TAGAAGTTtgccaacaaaaacaaaagattaaCCCTGGAAACAAATCTTCC
CCTCAAAAGcagcaaaaacaaactttagtcTCTAGCTATTTCAAGTCCTT
TTAAATCCAATTGCTTGTTCTTTATCCGCAACGAGGAtcgtattttgttt
tgttcactCCATTTAAAATGTCTACGACAGGGCTGATTAGTTTCatagtt
tttttgtttacttaaatGCTAAACCGAAAAGTCTATCGCAAGTTGACAGT
TTGAAATTATATAGGATGACGTTGCAGCCTCGTTTTTATCTTAACATTTC
TATCAAATTGAGCATCTTCAAGTTTTGTATATACGCAATATGACGTTCAT
ATCtacttttatattttgttttctattcattttacAGCGATTTAAGACAT
ATTTTCGCTGTATGAAATTGTATAGGATGACGTTGCAGCCTCGTTTTCAT
CTTAACATTTctatcaaagttttaaaaatttatatatacCTTGTATATAC
ATAGTATAACGTTCATGTTTCAGCCTATTTTCGCTGTATAATaggcattt
taagaacattctgagTTGTTTTAATTAACGAATTTTAGTGccattttagc
caatctaggggGTAAAAGATCTGAAAAATTTCTGGCcctcggccccaacc
atggtggggcctgcgGGTGTCACTATATAACAAAATATCTCTGTTAGGAa
attttccgtctcacagaaaaaaa
Run BLAST on NCBI

transcript from alignment at sc0002645:4729..7423+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040962 ID=TCONS_00040962|Name=TCONS_00040962|organism=Clytia hemisphaerica|type=transcript|length=2695bp|location=Sequence derived from alignment at sc0002645:4729..7423+ (Clytia hemisphaerica)
CACAAAGTTCACAATGCTGTTAAAGTGTTTTGCAAACCCTTCAAACAACA
CATTGAAAGTTTATGGCGTGATATTCACAATGACGTCAAGTTCAGTGCGG
ATATTAAGCAAGCTCTCCAACATATTTGTCTTATCATTGGTTCTGAATAC
CACAAGCCTAGCGAACCAGTTGCACATCGGTGGTTATCATCATATAATTC
AACAACCCAAAATTATCCTATGTTTAGTGCACTCTGGTTGTTGTATTTCA
GTTGGATGACCAAAGAAGATCGCCTTCTTTACAAAGATGAGAAAGAACTA
CTCACAGTTGATGCCAGCAAGGAAGGCAAACAAAATATCATTGAAATTCA
AAGCACAATGCGAAAGAAAGGTCTAACTAAAAAAGGCAAGGAACGAAAAC
AACGCATCTTTGGAAAATTGATACATAGATGTGACATGACTAAGCTTGTG
GCTGAATTCTATCAAGCAGTGCTTCCTTTGTTCAAATCTTTTGTCCTGAT
CTTTCAACAGAAGTCACCACAAGTGCATAGACTTCATAGCAGTATTTCCT
CTGTCACTCGCGAATTCTTTGCATGTTTCATGGAGCACAGCACTATCAAA
GGTATATCTATTCTTTTCCAAAATGGTTGATATCCTTAAAATGCATATCT
CTAACTTCTTTTGACCCGGATATCTAAATGATTTGATTTCACCAGTAAGA
TATTTTGGCAAATCAGTCTGTTTAAAGCTACTTTTAAGGGTTAGAAATTA
AAGAATTGTGTTTAGGATTTGATTTCATGACATTCCCTAAAGAAAATGAA
TCGAATTCTTTTTAAAGGTCTCACCGGGTCAAAGCTTCAGAAAGTTGACG
TGAAGGGAAATTTACGAAAAAGCAAGCACATCTATACAGGCACAATGACG
AGAACGCTCggtaagaaattaaaagaagaaaaaaagattgagACTCTCAA
CGAATTCAAAGCATGTGTTAAGGAAGCCTACGTTGAAACAGCAATGTACA
TACAGAAGAACTTTCCATTATCTAATCGTGTTTTACAATGCTTGGCTGGG
CTTGATCCTAACCACATCGTATCTGGAAAGTCTTACATTCACCTTAAAAC
CCTTTCCGACTTCTTTCCCACAATCCTTGGCAGCGAAGAAGATCGAGAAT
TGTATCTAAATGAAGTTTCCCGCATTCAATTGGACGATGGTCTTCCATCA
ACTACCAACGAAGCAGGAAAAGATATTCGTCTTGATCATTGGTGGAACAA
GGTTTTTTTAACCAAGAAATACCCTGTTTTATCGAAAGTAGTGAAAGCTT
GTCTGTCAATTTTTACCGGCCCTCAAGTGGAGTCATCTTTCAGCAAAATG
AATGACATCATCGACCGCAAATCAAACCGCATGAATGTGGAAACTTACGA
TGGTATCATGACCGTAAAATACAGCTTACAGTCGAAATCTTCCTCTGAAA
TTTACCATCGCAAAGACCCCTTGTATGATCCCATCAACTCAAACGCCGTT
TATTTTGTTCGCACTGCAAACGCAAGATATAAAACTCGAATCgccaaaaa
acgtaaagagaAGAGTGATTCCAATAAAGCTTTAGGGGCAAaggtaaaat
taaatttcaacaaGCGGCAACTGACAGTGACTTTATCTACAGTACAGCAT
GACAGTATGACTAACTGATTACCGACTGACATTTTACTGAATCGATGAAT
ATGTTGAATAAGGAGATGACTACAATTAATAATTGTTAAGAATGACGTga
tcaaaactttcaatttttctctgtactgttttgcttattttgaatgaGTT
ATTGTTTCATATTAGAAAATTCCAGTTGAAAGGAAGAAGCAAAGCGTGCA
CAAAGTTGTTGAAACCATTCGGGAAGAAATTTGTGAAAAGGTTAAGAAAT
CCATGAgatcgaaaacaaagaaaagtTCCACTGTAACAGCAGAATCTGTT
TCAAATCCGAAAGAAACCGAGCTAGAAGTTtgccaacaaaaacaaaagat
taaCCCTGGAAACAAATCTTCCCCTCAAAAGcagcaaaaacaaactttag
tcTCTAGCTATTTCAAGTCCTTTTAAATCCAATTGCTTGTTCTTTATCCG
CAACGAGGAtcgtattttgttttgttcactCCATTTAAAATGTCTACGAC
AGGGCTGATTAGTTTCatagtttttttgtttacttaaatGCTAAACCGAA
AAGTCTATCGCAAGTTGACAGTTTGAAATTATATAGGATGACGTTGCAGC
CTCGTTTTTATCTTAACATTTCTATCAAATTGAGCATCTTCAAGTTTTGT
ATATACGCAATATGACGTTCATATCtacttttatattttgttttctattc
attttacAGCGATTTAAGACATATTTTCGCTGTATGAAATTGTATAGGAT
GACGTTGCAGCCTCGTTTTCATCTTAACATTTctatcaaagttttaaaaa
tttatatatacCTTGTATATACATAGTATAACGTTCATGTTTCAGCCTAT
TTTCGCTGTATAATaggcattttaagaacattctgagTTGTTTTAATTAA
CGAATTTTAGTGccattttagccaatctaggggGTAAAAGATCTGAAAAA
TTTCTGGCcctcggccccaaccatggtggggcctgcgGGTGTCACTATAT
AACAAAATATCTCTGTTAGGAaattttccgtctcacagaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025007XLOC_025007Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040962-exon-sc0002645-1491911889:4729..6321TCONS_00040962-exon-sc0002645-1491911889:4729..6321Clytia hemisphaericaexon
TCONS_00040962-exon-sc0002645-1510915933:4729..6321TCONS_00040962-exon-sc0002645-1510915933:4729..6321Clytia hemisphaericaexon
TCONS_00040962-exon-sc0002645-1575043694:4729..6321TCONS_00040962-exon-sc0002645-1575043694:4729..6321Clytia hemisphaericaexon
TCONS_00040962-exon-sc0002645-1491911889:6544..7423TCONS_00040962-exon-sc0002645-1491911889:6544..7423Clytia hemisphaericaexon
TCONS_00040962-exon-sc0002645-1510915933:6544..7423TCONS_00040962-exon-sc0002645-1510915933:6544..7423Clytia hemisphaericaexon
TCONS_00040962-exon-sc0002645-1575043694:6544..7423TCONS_00040962-exon-sc0002645-1575043694:6544..7423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002645supercontigsc0002645:4729..7423 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.050414	0.111898	0	0	0	0.222771	0	0.345591	0.000208451	0.495134	0.216008	0.223561	0	0.205344	0.215366	0	0.686217	0.498073	0.0460433	0.881565	0	0	0	0.404889	0	0	0	0.254479
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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