TCONS_00040961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040961
Unique NameTCONS_00040961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040961 ID=TCONS_00040961|Name=TCONS_00040961|organism=Clytia hemisphaerica|type=transcript|length=3264bp
CAATATCATACGGTTCTGCGGGTAAAAATAACCTTCGAAAACACGCACAG
ACTAAGGAAAAACATAAGAAGGAGAGAGAAGTTAGAGTTAGTAATACATC
CCTTCCAGTATCATATTACGAGCCTGTAACGAACACTGATCAACAACCCA
CATGCCAATTGCCTTACGGAGCAGCCGATAATGTTCATGACAAAGAACTT
TGCGACTCTGGAAAGGTTGTTGTGAAGAAACCCCTTGTAAGTCTTCTCGA
CCGGAAATGTAATATAGAAGCGTATATAGTATCGTTTATTTGTGAACACA
ATTTACCACTCTCGGTTGCTCCTCACTTAACACAATTATGCAAAGACTTG
AGTGTAGATTCAAAAGCTCTGAATGCAGTAAATATCAGTGCGACTTCAGC
AACTTACAAGATTGTGGATGGTCTTGGTGTTCATAAAAGAAGACAAATAA
TCAGTAATCTACGAAAATCACCTTTTTCCATTAACATTGATGAATGCACC
GCATCAAGTGGTATGAAAGTCTTTACAATTCTTGTCTCATATTTTGATGA
ATCGATTGGTGAATGTGTTGTAGAACATTATTGCTCTTTCGAATGTATCA
AAACCAATGCTGTAGAGTTGTTCGAAGGAATCTGTGATGTATTTGCCAAA
GACCAAATTCCATTTGATAATCTGATTTCCGACCTCAGTGATTCAGCAGC
TTACATGCGTGGTGTAAAAAGTGGAATCGAGAAAAGGCTCCGTGATAAGG
CCCTGCATTTGCTTGATATTGACGGAGATTTATGCCACAAAGTTCACAAT
GCTGTTAAAGTGTTTTGCAAACCCTTCAAACAACACATTGAAAGTTTATG
GCGTGATATTCACAATGACGTCAAGTTCAGTGCGGATATTAAGCAAGCTC
TCCAACATATTTGTCTTATCATTGGTTCTGAATACCACAAGCCTAGCGAA
CCAGTTGCACATCGGTGGTTATCATCATATAATTCAACAACCCAAAATTA
TCCTATGTTTAGTGCACTCTGGTTGTTGTATTTCAGTTGGATGACCAAAG
AAGATCGCCTTCTTTACAAAGATGAGAAAGAACTACTCACAGTTGATGCC
AGCAAGGAAGGCAAACAAAATATCATTGAAATTCAAAGCACAATGCGAAA
GAAAGGTCTAACTAAAAAAGGCAAGGAACGAAAACAACGCATCTTTGGAA
AATTGATACATAGATGTGACATGACTAAGCTTGTGGCTGAATTCTATCAA
GCAGTGCTTCCTTTGTTCAAATCTTTTGTCCTGATCTTTCAACAGAAGTC
ACCACAAGTGCATAGACTTCATAGCAGTATTTCCTCTGTCACTCGCGAAT
TCTTTGCATGTTTCATGGAGCACAGCACTATCAAAGGTCTCACCGGGTCA
AAGCTTCAGAAAGTTGACGTGAAGGGAAATTTACGAAAAAGCAAGCACAT
CTATACAGGCACAATGACGAGAACGCTCggtaagaaattaaaagaagaaa
aaaagattgagACTCTCAACGAATTCAAAGCATGTGTTAAGGAAGCCTAC
GTTGAAACAGCAATGTACATACAGAAGAACTTTCCATTATCTAATCGTGT
TTTACAATGCTTGGCTGGGCTTGATCCTAACCACATCGTATCTGGAAAGT
CTTACATTCACCTTAAAACCCTTTCCGACTTCTTTCCCACAATCCTTGGC
AGCGAAGAAGATCGAGAATTGTATCTAAATGAAGTTTCCCGCATTCAATT
GGACGATGGTCTTCCATCAACTACCAACGAAGCAGGAAAAGATATTCGTC
TTGATCATTGGTGGAACAAGGTTTTTTTAACCAAGAAATACCCTGTTTTA
TCGAAAGTAGTGAAAGCTTGTCTGTCAATTTTTACCGGCCCTCAAGTGGA
GTCATCTTTCAGCAAAATGAATGACATCATCGACCGCAAATCAAACCGCA
TGAATGTGGAAACTTACGATGGTATCATGACCGTAAAATACAGCTTACAG
TCGAAATCTTCCTCTGAAATTTACCATCGCAAAGACCCCTTGTATGATCC
CATCAACTCAAACGCCGTTTATTTTGTTCGCACTGCAAACGCAAGATATA
AAACTCGAATCgccaaaaaacgtaaagagaAGAGTGATTCCAATAAAGCT
TTAGGGGCAAaggtaaaattaaatttcaacaaGCGGCAACTGACAGTGAC
TTTATCTACAGTACAGCATGACAGTATGACTAACTGATTACCGACTGACA
TTTTACTGAATCGATGAATATGTTGAATAAGGAGATGACTACAATTAATA
ATTGTTAAGAATGACGTgatcaaaactttcaatttttctctgtactgttt
tgcttattttgaatgaGTTATTGTTTCATATTAGAAAATTCCAGTTGAAA
GGAAGAAGCAAAGCGTGCACAAAGTTGTTGAAACCATTCGGGAAGAAATT
TGTGAAAAGGTTAAGAAATCCATGAgatcgaaaacaaagaaaagtTCCAC
TGTAACAGCAGAATCTGTTTCAAATCCGAAAGAAACCGAGCTAGAAGTTt
gccaacaaaaacaaaagattaaCCCTGGAAACAAATCTTCCCCTCAAAAG
cagcaaaaacaaactttagtcTCTAGCTATTTCAAGTCCTTTTAAATCCA
ATTGCTTGTTCTTTATCCGCAACGAGGAtcgtattttgttttgttcactC
CATTTAAAATGTCTACGACAGGGCTGATTAGTTTCatagtttttttgttt
acttaaatGCTAAACCGAAAAGTCTATCGCAAGTTGACAGTTTGAAATTA
TATAGGATGACGTTGCAGCCTCGTTTTTATCTTAACATTTCTATCAAATT
GAGCATCTTCAAGTTTTGTATATACGCAATATGACGTTCATATCtacttt
tatattttgttttctattcattttacAGCGATTTAAGACATATTTTCGCT
GTATGAAATTGTATAGGATGACGTTGCAGCCTCGTTTTCATCTTAACATT
TctatcaaagttttaaaaatttatatatacCTTGTATATACATAGTATAA
CGTTCATGTTTCAGCCTATTTTCGCTGTATAATaggcattttaagaacat
tctgagTTGTTTTAATTAACGAATTTTAGTGccattttagccaatctagg
ggGTAAAAGATCTGAAAAATTTCTGGCcctcggccccaaccatggtgggg
cctgcgGGTGTCACTATATAACAAAATATCTCTGTTAGGAaattttccgt
ctcacagaaaaaaa
Run BLAST on NCBI

transcript from alignment at sc0002645:3746..7423+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040961 ID=TCONS_00040961|Name=TCONS_00040961|organism=Clytia hemisphaerica|type=transcript|length=3678bp|location=Sequence derived from alignment at sc0002645:3746..7423+ (Clytia hemisphaerica)
CAATATCATACGGTTCTGCGGGTAAAAATAACCTTCGAAAACACGCACAG
ACTAAGGAAAAACATAAGAAGGAGAGAGAAGTTAGAGTTAGTAATACATC
CCTTCCAGTATCATATTACGAGCCTGTAACGAACACTGATCAACAACCCA
CATGCCAATTGCCTTACGGAGCAGCCGATAATGTTCATGACAAAGAACTT
TGCGACTCTGGAAAGGTTGTTGTGAAGAAACCCCTTGTAAGTCTTCTCGA
CCGGAAATGTAATATAGAAGCGTATATAGTATCGTTTATTTGTGAACACA
ATTTACCACTCTCGGTTGCTCCTCACTTAACACAATTATGCAAAGACTTG
AGTGTAGATTCAAAAGCTCTGAATGCAGTAAATATCAGTGCGACTTCAGC
AACTTACAAGATTGTGGATGGTCTTGGTGTTCATAAAAGAAGACAAATAA
TCAGTAATCTACGAAAATCACCTTTTTCCATTAACATTGATGAATGCACC
GCATCAAGTGGTATGAAAGTCTTTACAATTCTTGTCTCATATTTTGATGA
ATCGATTGGTGAATGTGTTGTAGAACATTATTGCTCTTTCGAATGTATCA
AAACCAATGCTGTAGAGTTGTTCGAAGGAATCTGTGATGTATTTGCCAAA
GACCAAATTCCATTTGATAATCTGATTTCCGACCTCAGTGATTCAGCAGC
TTACATGCGTGGTGTAAAAAGTGGAATCGAGAAAAGGTATGTCTTATGAA
GGTGCATGTCTTATGAAGGTGTATGGTTTCGTCTTGTCTTAGTTTATTGA
TAATTTTCCTCTCGGttgtttgaagaaaaagttaATCACGTCATTTTCGA
GTAATTTATCTTATATGGCTAATCATTCAACTCTATTCAATACAGTATTT
GTTTTAGACTATGCTTCATGTTTCATCTTTTTAGGCTCCGTGATAAGGCC
CTGCATTTGCTTGATATTGACGGAGATTTATGCCACAAAGTTCACAATGC
TGTTAAAGTGTTTTGCAAACCCTTCAAACAACACATTGAAAGTTTATGGC
GTGATATTCACAATGACGTCAAGTTCAGTGCGGATATTAAGCAAGCTCTC
CAACATATTTGTCTTATCATTGGTTCTGAATACCACAAGCCTAGCGAACC
AGTTGCACATCGGTGGTTATCATCATATAATTCAACAACCCAAAATTATC
CTATGTTTAGTGCACTCTGGTTGTTGTATTTCAGTTGGATGACCAAAGAA
GATCGCCTTCTTTACAAAGATGAGAAAGAACTACTCACAGTTGATGCCAG
CAAGGAAGGCAAACAAAATATCATTGAAATTCAAAGCACAATGCGAAAGA
AAGGTCTAACTAAAAAAGGCAAGGAACGAAAACAACGCATCTTTGGAAAA
TTGATACATAGATGTGACATGACTAAGCTTGTGGCTGAATTCTATCAAGC
AGTGCTTCCTTTGTTCAAATCTTTTGTCCTGATCTTTCAACAGAAGTCAC
CACAAGTGCATAGACTTCATAGCAGTATTTCCTCTGTCACTCGCGAATTC
TTTGCATGTTTCATGGAGCACAGCACTATCAAAGGTATATCTATTCTTTT
CCAAAATGGTTGATATCCTTAAAATGCATATCTCTAACTTCTTTTGACCC
GGATATCTAAATGATTTGATTTCACCAGTAAGATATTTTGGCAAATCAGT
CTGTTTAAAGCTACTTTTAAGGGTTAGAAATTAAAGAATTGTGTTTAGGA
TTTGATTTCATGACATTCCCTAAAGAAAATGAATCGAATTCTTTTTAAAG
GTCTCACCGGGTCAAAGCTTCAGAAAGTTGACGTGAAGGGAAATTTACGA
AAAAGCAAGCACATCTATACAGGCACAATGACGAGAACGCTCggtaagaa
attaaaagaagaaaaaaagattgagACTCTCAACGAATTCAAAGCATGTG
TTAAGGAAGCCTACGTTGAAACAGCAATGTACATACAGAAGAACTTTCCA
TTATCTAATCGTGTTTTACAATGCTTGGCTGGGCTTGATCCTAACCACAT
CGTATCTGGAAAGTCTTACATTCACCTTAAAACCCTTTCCGACTTCTTTC
CCACAATCCTTGGCAGCGAAGAAGATCGAGAATTGTATCTAAATGAAGTT
TCCCGCATTCAATTGGACGATGGTCTTCCATCAACTACCAACGAAGCAGG
AAAAGATATTCGTCTTGATCATTGGTGGAACAAGGTTTTTTTAACCAAGA
AATACCCTGTTTTATCGAAAGTAGTGAAAGCTTGTCTGTCAATTTTTACC
GGCCCTCAAGTGGAGTCATCTTTCAGCAAAATGAATGACATCATCGACCG
CAAATCAAACCGCATGAATGTGGAAACTTACGATGGTATCATGACCGTAA
AATACAGCTTACAGTCGAAATCTTCCTCTGAAATTTACCATCGCAAAGAC
CCCTTGTATGATCCCATCAACTCAAACGCCGTTTATTTTGTTCGCACTGC
AAACGCAAGATATAAAACTCGAATCgccaaaaaacgtaaagagaAGAGTG
ATTCCAATAAAGCTTTAGGGGCAAaggtaaaattaaatttcaacaaGCGG
CAACTGACAGTGACTTTATCTACAGTACAGCATGACAGTATGACTAACTG
ATTACCGACTGACATTTTACTGAATCGATGAATATGTTGAATAAGGAGAT
GACTACAATTAATAATTGTTAAGAATGACGTgatcaaaactttcaatttt
tctctgtactgttttgcttattttgaatgaGTTATTGTTTCATATTAGAA
AATTCCAGTTGAAAGGAAGAAGCAAAGCGTGCACAAAGTTGTTGAAACCA
TTCGGGAAGAAATTTGTGAAAAGGTTAAGAAATCCATGAgatcgaaaaca
aagaaaagtTCCACTGTAACAGCAGAATCTGTTTCAAATCCGAAAGAAAC
CGAGCTAGAAGTTtgccaacaaaaacaaaagattaaCCCTGGAAACAAAT
CTTCCCCTCAAAAGcagcaaaaacaaactttagtcTCTAGCTATTTCAAG
TCCTTTTAAATCCAATTGCTTGTTCTTTATCCGCAACGAGGAtcgtattt
tgttttgttcactCCATTTAAAATGTCTACGACAGGGCTGATTAGTTTCa
tagtttttttgtttacttaaatGCTAAACCGAAAAGTCTATCGCAAGTTG
ACAGTTTGAAATTATATAGGATGACGTTGCAGCCTCGTTTTTATCTTAAC
ATTTCTATCAAATTGAGCATCTTCAAGTTTTGTATATACGCAATATGACG
TTCATATCtacttttatattttgttttctattcattttacAGCGATTTAA
GACATATTTTCGCTGTATGAAATTGTATAGGATGACGTTGCAGCCTCGTT
TTCATCTTAACATTTctatcaaagttttaaaaatttatatatacCTTGTA
TATACATAGTATAACGTTCATGTTTCAGCCTATTTTCGCTGTATAATagg
cattttaagaacattctgagTTGTTTTAATTAACGAATTTTAGTGccatt
ttagccaatctaggggGTAAAAGATCTGAAAAATTTCTGGCcctcggccc
caaccatggtggggcctgcgGGTGTCACTATATAACAAAATATCTCTGTT
AGGAaattttccgtctcacagaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025007XLOC_025007Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040961-exon-sc0002645-1491911889:3746..4481TCONS_00040961-exon-sc0002645-1491911889:3746..4481Clytia hemisphaericaexon
TCONS_00040961-exon-sc0002645-1510915933:3746..4481TCONS_00040961-exon-sc0002645-1510915933:3746..4481Clytia hemisphaericaexon
TCONS_00040961-exon-sc0002645-1575043694:3746..4481TCONS_00040961-exon-sc0002645-1575043694:3746..4481Clytia hemisphaericaexon
TCONS_00040961-exon-sc0002645-1491911889:4680..5329TCONS_00040961-exon-sc0002645-1491911889:4680..5329Clytia hemisphaericaexon
TCONS_00040961-exon-sc0002645-1510915933:4680..5329TCONS_00040961-exon-sc0002645-1510915933:4680..5329Clytia hemisphaericaexon
TCONS_00040961-exon-sc0002645-1575043694:4680..5329TCONS_00040961-exon-sc0002645-1575043694:4680..5329Clytia hemisphaericaexon
TCONS_00040961-exon-sc0002645-1491911889:5546..7423TCONS_00040961-exon-sc0002645-1491911889:5546..7423Clytia hemisphaericaexon
TCONS_00040961-exon-sc0002645-1510915933:5546..7423TCONS_00040961-exon-sc0002645-1510915933:5546..7423Clytia hemisphaericaexon
TCONS_00040961-exon-sc0002645-1575043694:5546..7423TCONS_00040961-exon-sc0002645-1575043694:5546..7423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002645supercontigsc0002645:3746..7423 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.186797	0.16339	0.155683	0.0289161	0.500857	0.555847	0.656018	0.713273	0.357649	0.755848	0.215171	0.233012	0.483566	0.49737	0.559561	0.204169	0.176216	0.159705	0	0.274866	0.512046	1.95018e-06	0.109595	0.271409	1.4308	0.59383	0	0	0.241513	0.254649
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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