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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040960 ID=TCONS_00040960|Name=TCONS_00040960|organism=Clytia hemisphaerica|type=transcript|length=3993bp
ATTAAAACTGTTTATGGCTGATATACATTTGTTTTCTAGTATTTATGGTA
AGTTGGTAATTTGATAAAGATCTGTAAAGATCGAAATATcgtttaaaaaa
atatgtatcttttgttttgaaatttcctgattcaCACAACCTTGgctttt
tatgtttgatttatGGTAAGTTGGTAAGCAAAAGTTATTTTGATCCACGA
AATATTATAACAGtcatttctatttattttttagagTTAAATTACGAAAA
AGTGATGAATataaattatattaaatatcTACTAACGGAAGTTTGAAGAA
TGGATTCAGAAAAGTACATAGTGTTAGACAACGTGACATACAAAGTTTTA
GAGCGTAAAGGAGAGCAATGCGACTTGGAAGGTACAGTAAAAAACAAATG
GCGTTGGTGCTGGTTAGAGGAGAGAGACTTGGGACCGCACAAAGACTTTT
TGTCAGATTACATCGTCAAGATAAATAAACCAGGCTATGCATATTGTACA
TATTGCAAAACGCCAATATCATACGGTTCTGCGGGTAAAAATAACCTTCG
AAAACACGCACAGACTAAGGAAAAACATAAGAAGGAGAGAGAAGTTAGAG
TTAGTAATACATCCCTTCCAGTATCATATTACGAGCCTGTAACGAACACT
GATCAACAACCCACATGCCAATTGCCTTACGGAGCAGCCGATAATGTTCA
TGACAAAGAACTTTGCGACTCTGGAAAGGTTGTTGTGAAGAAACCCCTTG
TAAGTCTTCTCGACCGGAAATGTAATATAGAAGCGTATATAGTATCGTTT
ATTTGTGAACACAATTTACCACTCTCGGTTGCTCCTCACTTAACACAATT
ATGCAAAGACTTGAGTGTAGATTCAAAAGCTCTGAATGCAGTAAATATCA
GTGCGACTTCAGCAACTTACAAGATTGTGGATGGTCTTGGTGTTCATAAA
AGAAGACAAATAATCAGTAATCTACGAAAATCACCTTTTTCCATTAACAT
TGATGAATGCACCGCATCAAGTGGTATGAAAGTCTTTACAATTCTTGTCT
CATATTTTGATGAATCGATTGGTGAATGTGTTGTAGAACATTATTGCTCT
TTCGAATGTATCAAAACCAATGCTGTAGAGTTGTTCGAAGGAATCTGTGA
TGTATTTGCCAAAGACCAAATTCCATTTGATAATCTGATTTCCGACCTCA
GTGATTCAGCAGCTTACATGCGTGGTGTAAAAAGTGGAATCGAGAAAAGG
CTCCGTGATAAGGCCCTGCATTTGCTTGATATTGACGGAGATTTATGCCA
CAAAGTTCACAATGCTGTTAAAGTGTTTTGCAAACCCTTCAAACAACACA
TTGAAAGTTTATGGCGTGATATTCACAATGACGTCAAGTTCAGTGCGGAT
ATTAAGCAAGCTCTCCAACATATTTGTCTTATCATTGGTTCTGAATACCA
CAAGCCTAGCGAACCAGTTGCACATCGGTGGTTATCATCATATAATTCAA
CAACCCAAAATTATCCTATGTTTAGTGCACTCTGGTTGTTGTATTTCAGT
TGGATGACCAAAGAAGATCGCCTTCTTTACAAAGATGAGAAAGAACTACT
CACAGTTGATGCCAGCAAGGAAGGCAAACAAAATATCATTGAAATTCAAA
GCACAATGCGAAAGAAAGGTCTAACTAAAAAAGGCAAGGAACGAAAACAA
CGCATCTTTGGAAAATTGATACATAGATGTGACATGACTAAGCTTGTGGC
TGAATTCTATCAAGCAGTGCTTCCTTTGTTCAAATCTTTTGTCCTGATCT
TTCAACAGAAGTCACCACAAGTGCATAGACTTCATAGCAGTATTTCCTCT
GTCACTCGCGAATTCTTTGCATGTTTCATGGAGCACAGCACTATCAAAGG
TATATCTATTCTTTTCCAAAATGGTTGATATCCTTAAAATGCATATCTCT
AACTTCTTTTGACCCGGATATCTAAATGATTTGATTTCACCAGTAAGATA
TTTTGGCAAATCAGTCTGTTTAAAGCTACTTTTAAGGGTTAGAAATTAAA
GAATTGTGTTTAGGATTTGATTTCATGACATTCCCTAAAGAAAATGAATC
GAATTCTTTTTAAAGGTCTCACCGGGTCAAAGCTTCAGAAAGTTGACGTG
AAGGGAAATTTACGAAAAAGCAAGCACATCTATACAGGCACAATGACGAG
AACGCTCggtaagaaattaaaagaagaaaaaaagattgagACTCTCAACG
AATTCAAAGCATGTGTTAAGGAAGCCTACGTTGAAACAGCAATGTACATA
CAGAAGAACTTTCCATTATCTAATCGTGTTTTACAATGCTTGGCTGGGCT
TGATCCTAACCACATCGTATCTGGAAAGTCTTACATTCACCTTAAAACCC
TTTCCGACTTCTTTCCCACAATCCTTGGCAGCGAAGAAGATCGAGAATTG
TATCTAAATGAAGTTTCCCGCATTCAATTGGACGATGGTCTTCCATCAAC
TACCAACGAAGCAGGAAAAGATATTCGTCTTGATCATTGGTGGAACAAGG
TTTTTTTAACCAAGAAATACCCTGTTTTATCGAAAGTAGTGAAAGCTTGT
CTGTCAATTTTTACCGGCCCTCAAGTGGAGTCATCTTTCAGCAAAATGAA
TGACATCATCGACCGCAAATCAAACCGCATGAATGTGGAAACTTACGATG
GTATCATGACCGTAAAATACAGCTTACAGTCGAAATCTTCCTCTGAAATT
TACCATCGCAAAGACCCCTTGTATGATCCCATCAACTCAAACGCCGTTTA
TTTTGTTCGCACTGCAAACGCAAGATATAAAACTCGAATCgccaaaaaac
gtaaagagaAGAGTGATTCCAATAAAGCTTTAGGGGCAAaggtaaaatta
aatttcaacaaGCGGCAACTGACAGTGACTTTATCTACAGTACAGCATGA
CAGTATGACTAACTGATTACCGACTGACATTTTACTGAATCGATGAATAT
GTTGAATAAGGAGATGACTACAATTAATAATTGTTAAGAATGACGTgatc
aaaactttcaatttttctctgtactgttttgcttattttgaatgaGTTAT
TGTTTCATATTAGAAAATTCCAGTTGAAAGGAAGAAGCAAAGCGTGCACA
AAGTTGTTGAAACCATTCGGGAAGAAATTTGTGAAAAGGTTAAGAAATCC
ATGAgatcgaaaacaaagaaaagtTCCACTGTAACAGCAGAATCTGTTTC
AAATCCGAAAGAAACCGAGCTAGAAGTTtgccaacaaaaacaaaagatta
aCCCTGGAAACAAATCTTCCCCTCAAAAGcagcaaaaacaaactttagtc
TCTAGCTATTTCAAGTCCTTTTAAATCCAATTGCTTGTTCTTTATCCGCA
ACGAGGAtcgtattttgttttgttcactCCATTTAAAATGTCTACGACAG
GGCTGATTAGTTTCatagtttttttgtttacttaaatGCTAAACCGAAAA
GTCTATCGCAAGTTGACAGTTTGAAATTATATAGGATGACGTTGCAGCCT
CGTTTTTATCTTAACATTTCTATCAAATTGAGCATCTTCAAGTTTTGTAT
ATACGCAATATGACGTTCATATCtacttttatattttgttttctattcat
tttacAGCGATTTAAGACATATTTTCGCTGTATGAAATTGTATAGGATGA
CGTTGCAGCCTCGTTTTCATCTTAACATTTctatcaaagttttaaaaatt
tatatatacCTTGTATATACATAGTATAACGTTCATGTTTCAGCCTATTT
TCGCTGTATAATaggcattttaagaacattctgagTTGTTTTAATTAACG
AATTTTAGTGccattttagccaatctaggggGTAAAAGATCTGAAAAATT
TCTGGCcctcggccccaaccatggtggggcctgcgGGTGTCACTATATAA
CAAAATATCTCTGTTAGGAaattttccgtctcacagaaaaaaa Run BLAST on NCBI transcript from alignment at sc0002645:3233..7423+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040960 ID=TCONS_00040960|Name=TCONS_00040960|organism=Clytia hemisphaerica|type=transcript|length=4191bp|location=Sequence derived from alignment at sc0002645:3233..7423+ (Clytia hemisphaerica)
ATTAAAACTGTTTATGGCTGATATACATTTGTTTTCTAGTATTTATGGTA
AGTTGGTAATTTGATAAAGATCTGTAAAGATCGAAATATcgtttaaaaaa
atatgtatcttttgttttgaaatttcctgattcaCACAACCTTGgctttt
tatgtttgatttatGGTAAGTTGGTAAGCAAAAGTTATTTTGATCCACGA
AATATTATAACAGtcatttctatttattttttagagTTAAATTACGAAAA
AGTGATGAATataaattatattaaatatcTACTAACGGAAGTTTGAAGAA
TGGATTCAGAAAAGTACATAGTGTTAGACAACGTGACATACAAAGTTTTA
GAGCGTAAAGGAGAGCAATGCGACTTGGAAGGTACAGTAAAAAACAAATG
GCGTTGGTGCTGGTTAGAGGAGAGAGACTTGGGACCGCACAAAGACTTTT
TGTCAGATTACATCGTCAAGATAAATAAACCAGGCTATGCATATTGTACA
TATTGCAAAACGCCAATATCATACGGTTCTGCGGGTAAAAATAACCTTCG
AAAACACGCACAGACTAAGGAAAAACATAAGAAGGAGAGAGAAGTTAGAG
TTAGTAATACATCCCTTCCAGTATCATATTACGAGCCTGTAACGAACACT
GATCAACAACCCACATGCCAATTGCCTTACGGAGCAGCCGATAATGTTCA
TGACAAAGAACTTTGCGACTCTGGAAAGGTTGTTGTGAAGAAACCCCTTG
TAAGTCTTCTCGACCGGAAATGTAATATAGAAGCGTATATAGTATCGTTT
ATTTGTGAACACAATTTACCACTCTCGGTTGCTCCTCACTTAACACAATT
ATGCAAAGACTTGAGTGTAGATTCAAAAGCTCTGAATGCAGTAAATATCA
GTGCGACTTCAGCAACTTACAAGATTGTGGATGGTCTTGGTGTTCATAAA
AGAAGACAAATAATCAGTAATCTACGAAAATCACCTTTTTCCATTAACAT
TGATGAATGCACCGCATCAAGTGGTATGAAAGTCTTTACAATTCTTGTCT
CATATTTTGATGAATCGATTGGTGAATGTGTTGTAGAACATTATTGCTCT
TTCGAATGTATCAAAACCAATGCTGTAGAGTTGTTCGAAGGAATCTGTGA
TGTATTTGCCAAAGACCAAATTCCATTTGATAATCTGATTTCCGACCTCA
GTGATTCAGCAGCTTACATGCGTGGTGTAAAAAGTGGAATCGAGAAAAGG
TATGTCTTATGAAGGTGCATGTCTTATGAAGGTGTATGGTTTCGTCTTGT
CTTAGTTTATTGATAATTTTCCTCTCGGttgtttgaagaaaaagttaATC
ACGTCATTTTCGAGTAATTTATCTTATATGGCTAATCATTCAACTCTATT
CAATACAGTATTTGTTTTAGACTATGCTTCATGTTTCATCTTTTTAGGCT
CCGTGATAAGGCCCTGCATTTGCTTGATATTGACGGAGATTTATGCCACA
AAGTTCACAATGCTGTTAAAGTGTTTTGCAAACCCTTCAAACAACACATT
GAAAGTTTATGGCGTGATATTCACAATGACGTCAAGTTCAGTGCGGATAT
TAAGCAAGCTCTCCAACATATTTGTCTTATCATTGGTTCTGAATACCACA
AGCCTAGCGAACCAGTTGCACATCGGTGGTTATCATCATATAATTCAACA
ACCCAAAATTATCCTATGTTTAGTGCACTCTGGTTGTTGTATTTCAGTTG
GATGACCAAAGAAGATCGCCTTCTTTACAAAGATGAGAAAGAACTACTCA
CAGTTGATGCCAGCAAGGAAGGCAAACAAAATATCATTGAAATTCAAAGC
ACAATGCGAAAGAAAGGTCTAACTAAAAAAGGCAAGGAACGAAAACAACG
CATCTTTGGAAAATTGATACATAGATGTGACATGACTAAGCTTGTGGCTG
AATTCTATCAAGCAGTGCTTCCTTTGTTCAAATCTTTTGTCCTGATCTTT
CAACAGAAGTCACCACAAGTGCATAGACTTCATAGCAGTATTTCCTCTGT
CACTCGCGAATTCTTTGCATGTTTCATGGAGCACAGCACTATCAAAGGTA
TATCTATTCTTTTCCAAAATGGTTGATATCCTTAAAATGCATATCTCTAA
CTTCTTTTGACCCGGATATCTAAATGATTTGATTTCACCAGTAAGATATT
TTGGCAAATCAGTCTGTTTAAAGCTACTTTTAAGGGTTAGAAATTAAAGA
ATTGTGTTTAGGATTTGATTTCATGACATTCCCTAAAGAAAATGAATCGA
ATTCTTTTTAAAGGTCTCACCGGGTCAAAGCTTCAGAAAGTTGACGTGAA
GGGAAATTTACGAAAAAGCAAGCACATCTATACAGGCACAATGACGAGAA
CGCTCggtaagaaattaaaagaagaaaaaaagattgagACTCTCAACGAA
TTCAAAGCATGTGTTAAGGAAGCCTACGTTGAAACAGCAATGTACATACA
GAAGAACTTTCCATTATCTAATCGTGTTTTACAATGCTTGGCTGGGCTTG
ATCCTAACCACATCGTATCTGGAAAGTCTTACATTCACCTTAAAACCCTT
TCCGACTTCTTTCCCACAATCCTTGGCAGCGAAGAAGATCGAGAATTGTA
TCTAAATGAAGTTTCCCGCATTCAATTGGACGATGGTCTTCCATCAACTA
CCAACGAAGCAGGAAAAGATATTCGTCTTGATCATTGGTGGAACAAGGTT
TTTTTAACCAAGAAATACCCTGTTTTATCGAAAGTAGTGAAAGCTTGTCT
GTCAATTTTTACCGGCCCTCAAGTGGAGTCATCTTTCAGCAAAATGAATG
ACATCATCGACCGCAAATCAAACCGCATGAATGTGGAAACTTACGATGGT
ATCATGACCGTAAAATACAGCTTACAGTCGAAATCTTCCTCTGAAATTTA
CCATCGCAAAGACCCCTTGTATGATCCCATCAACTCAAACGCCGTTTATT
TTGTTCGCACTGCAAACGCAAGATATAAAACTCGAATCgccaaaaaacgt
aaagagaAGAGTGATTCCAATAAAGCTTTAGGGGCAAaggtaaaattaaa
tttcaacaaGCGGCAACTGACAGTGACTTTATCTACAGTACAGCATGACA
GTATGACTAACTGATTACCGACTGACATTTTACTGAATCGATGAATATGT
TGAATAAGGAGATGACTACAATTAATAATTGTTAAGAATGACGTgatcaa
aactttcaatttttctctgtactgttttgcttattttgaatgaGTTATTG
TTTCATATTAGAAAATTCCAGTTGAAAGGAAGAAGCAAAGCGTGCACAAA
GTTGTTGAAACCATTCGGGAAGAAATTTGTGAAAAGGTTAAGAAATCCAT
GAgatcgaaaacaaagaaaagtTCCACTGTAACAGCAGAATCTGTTTCAA
ATCCGAAAGAAACCGAGCTAGAAGTTtgccaacaaaaacaaaagattaaC
CCTGGAAACAAATCTTCCCCTCAAAAGcagcaaaaacaaactttagtcTC
TAGCTATTTCAAGTCCTTTTAAATCCAATTGCTTGTTCTTTATCCGCAAC
GAGGAtcgtattttgttttgttcactCCATTTAAAATGTCTACGACAGGG
CTGATTAGTTTCatagtttttttgtttacttaaatGCTAAACCGAAAAGT
CTATCGCAAGTTGACAGTTTGAAATTATATAGGATGACGTTGCAGCCTCG
TTTTTATCTTAACATTTCTATCAAATTGAGCATCTTCAAGTTTTGTATAT
ACGCAATATGACGTTCATATCtacttttatattttgttttctattcattt
tacAGCGATTTAAGACATATTTTCGCTGTATGAAATTGTATAGGATGACG
TTGCAGCCTCGTTTTCATCTTAACATTTctatcaaagttttaaaaattta
tatatacCTTGTATATACATAGTATAACGTTCATGTTTCAGCCTATTTTC
GCTGTATAATaggcattttaagaacattctgagTTGTTTTAATTAACGAA
TTTTAGTGccattttagccaatctaggggGTAAAAGATCTGAAAAATTTC
TGGCcctcggccccaaccatggtggggcctgcgGGTGTCACTATATAACA
AAATATCTCTGTTAGGAaattttccgtctcacagaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040960-exon-sc0002645-1491911889:3233..4481 | TCONS_00040960-exon-sc0002645-1491911889:3233..4481 | Clytia hemisphaerica | exon |
| TCONS_00040960-exon-sc0002645-1510915933:3233..4481 | TCONS_00040960-exon-sc0002645-1510915933:3233..4481 | Clytia hemisphaerica | exon |
| TCONS_00040960-exon-sc0002645-1575043694:3233..4481 | TCONS_00040960-exon-sc0002645-1575043694:3233..4481 | Clytia hemisphaerica | exon |
| TCONS_00040960-exon-sc0002645-1491911889:4680..7423 | TCONS_00040960-exon-sc0002645-1491911889:4680..7423 | Clytia hemisphaerica | exon |
| TCONS_00040960-exon-sc0002645-1510915933:4680..7423 | TCONS_00040960-exon-sc0002645-1510915933:4680..7423 | Clytia hemisphaerica | exon |
| TCONS_00040960-exon-sc0002645-1575043694:4680..7423 | TCONS_00040960-exon-sc0002645-1575043694:4680..7423 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002645 | supercontig | sc0002645:3233..7423 + |
Blast
The following BLAST results are available for this feature:
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