TCONS_00040958 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040958
Unique NameTCONS_00040958
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length227

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040958 ID=TCONS_00040958|Name=TCONS_00040958|organism=Clytia hemisphaerica|type=transcript|length=227bp
CTTGCTGAACTTCTTAATGACCAATTCACTAGTGTATTCTCCAAAGACGA
TGGTACCACCCCAACCCCTAATGGACCACCTAGTAGTGTCAAAATTGATG
AGCTTCTCATAACCAAAAACGGAATTATCAAACTTCTAAAAGATTTGAAC
CCTCACAAAGCCAGTGGACCAGATGGGATAGGTGCAAGAGTCCTGAAAGA
ATGTGCAGACCAGTTGGCAGACGGCNN
Run BLAST on NCBI

transcript from alignment at sc0002642:23142..23368

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040958 ID=TCONS_00040958|Name=TCONS_00040958|organism=Clytia hemisphaerica|type=transcript|length=227bp|location=Sequence derived from alignment at sc0002642:23142..23368 (Clytia hemisphaerica)
NNGCCGTCTGCCAACTGGTCTGCACATTCTTTCAGGACTCTTGCACCTAT
CCCATCTGGTCCACTGGCTTTGTGAGGGTTCAAATCTTTTAGAAGTTTGA
TAATTCCGTTTTTGGTTATGAGAAGCTCATCAATTTTGACACTACTAGGT
GGTCCATTAGGGGTTGGGGTGGTACCATCGTCTTTGGAGAATACACTAGT
GAATTGGTCATTAAGAAGTTCAGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025006XLOC_025006Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040958-exon-sc0002642-1491911889:23142..23368TCONS_00040958-exon-sc0002642-1491911889:23142..23368Clytia hemisphaericaexon
TCONS_00040958-exon-sc0002642-1510915933:23142..23368TCONS_00040958-exon-sc0002642-1510915933:23142..23368Clytia hemisphaericaexon
TCONS_00040958-exon-sc0002642-1575043694:23142..23368TCONS_00040958-exon-sc0002642-1575043694:23142..23368Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002642supercontigsc0002642:23142..23368 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.74069	5.56413	1.47614	0	0	5.29552	2.78749	1.38823	2.91619	0	3.13363	1.4481	5.27834	1.00589	1.98978	4.15894	1.70511	0	0.239582	0	0	0	0	7.24872	6.37032	0	0.986764	3.48778	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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