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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040952 ID=TCONS_00040952|Name=TCONS_00040952|organism=Clytia hemisphaerica|type=transcript|length=2455bpRun BLAST on NCBI protein sequence of TCONS_00040952-protein >TCONS_00040952-protein ID=TCONS_00040952-protein|Name=TCONS_00040952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp MNGQNTNNHTHHQQGQPSNSQVPTSSETDPILIEGASANPSSSSHTGLSSRun BLAST on NCBI transcript from alignment at sc0002640:8703..18129+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00040952 ID=TCONS_00040952|Name=TCONS_00040952|organism=Clytia hemisphaerica|type=transcript|length=9427bp|location=Sequence derived from alignment at sc0002640:8703..18129+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0002640:8703..18129+ >TCONS_00040952 ID=TCONS_00040952|Name=TCONS_00040952|organism=Clytia hemisphaerica|type=CDS|length=9807bp|location=Sequence derived from alignment at sc0002640:8703..18129+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00040952 vs. Swiss-Prot (Human)
Match: KCD20 (BTB/POZ domain-containing protein KCTD20 OS=Homo sapiens GN=KCTD20 PE=1 SV=1) HSP 1 Score: 335.109 bits (858), Expect = 1.035e-105 Identity = 162/293 (55.29%), Postives = 211/293 (72.01%), Query Frame = 1
Query: 478 KQNHSP---------KSISFGGTIPRNREPRTLPSRITLLVNGTRFVVNPCIFTKYPNTLLGRMFNSSSDYVTT--NEHGEYEVAQGITANVFKSILDYYKTGTINCPSSISCSELREACDYLLVPFNSQIVKAQNLCELLHELSNDGAREVFMSSFVENVILPKMLRCAEKGNRECHLVILKDDDVVEWGE-FPPANGEEYAEIVNNTALYRFFKYFENRDVAKDVLIERGLKKVKLGIEGYPTHMEKVKYKQHGKPEVIYSYIQRPFVHMSWEKEGSKSRHVDFQCVKPKT 1320
K+NH P S+ FG + P ++TLLV+GTRFVVNP IFT +P+T+LGRMF +Y T NE GEYE+A+GI+A VF+++LDYYKTG INCP IS +LR+ CDYL + F+ ++ Q+L LLHELSNDGA + F ++E +ILP M+ CA+KG RECH+V+L D+D V+W E PP GEEY++I+ ++ LYRFFKY ENRDVAK VL ERGLK +++GIEGYPT EK+K + G+ EVIY+Y+QRPF+ MSWEKE KSRHVDFQCV+ K+
Sbjct: 88 KRNHEPFIAPERFGNSSVGFG-----SNSHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQF-DHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKS 374 The following BLAST results are available for this feature:
BLAST of TCONS_00040952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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