TCONS_00040939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040939
Unique NameTCONS_00040939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040939 ID=TCONS_00040939|Name=TCONS_00040939|organism=Clytia hemisphaerica|type=transcript|length=349bp
ccaaaatcaaatgaaaggaaATGCAGACAAGTCTGAGTTGATAGCTAACA
ATACCAGCAAAGAAATCTTCATTACTATACAGAATGAACGCATCTTTAAC
AGcaaatttaattttaacttttgaCAACTGTCTGACTTTTGAGCCACATA
TTAACACGATTTATAAGAAAGCTAGCCAGAAAATCAGTGCACTTGCGAGG
GTAGCACCGtacataaatcaaaagaaaaaacaaaggcTCATGAATGCCTT
CTTTCGAAGTCAATTCAATTATTGTTCGCTTGTCTGGATGTTTCATGTTC
GCAGGCtagatcaaaaaataaatcacctccacgaaagatgtttgAGGAT
Run BLAST on NCBI

transcript from alignment at sc0002633:4368..4716

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040939 ID=TCONS_00040939|Name=TCONS_00040939|organism=Clytia hemisphaerica|type=transcript|length=349bp|location=Sequence derived from alignment at sc0002633:4368..4716 (Clytia hemisphaerica)
ATCCTcaaacatctttcgtggaggtgatttattttttgatctaGCCTGCG
AACATGAAACATCCAGACAAGCGAACAATAATTGAATTGACTTCGAAAGA
AGGCATTCATGAgcctttgttttttcttttgatttatgtaCGGTGCTACC
CTCGCAAGTGCACTGATTTTCTGGCTAGCTTTCTTATAAATCGTGTTAAT
ATGTGGCTCAAAAGTCAGACAGTTGtcaaaagttaaaattaaatttgCTG
TTAAAGATGCGTTCATTCTGTATAGTAATGAAGATTTCTTTGCTGGTATT
GTTAGCTATCAACTCAGACTTGTCTGCATttcctttcatttgattttgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024990XLOC_024990Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040939-exon-sc0002633-1491911889:4368..4716TCONS_00040939-exon-sc0002633-1491911889:4368..4716Clytia hemisphaericaexon
TCONS_00040939-exon-sc0002633-1510915933:4368..4716TCONS_00040939-exon-sc0002633-1510915933:4368..4716Clytia hemisphaericaexon
TCONS_00040939-exon-sc0002633-1575043694:4368..4716TCONS_00040939-exon-sc0002633-1575043694:4368..4716Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002633supercontigsc0002633:4368..4716 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.793125	0.415642	1.50791	2.09523	1.18988	0.374959	1.86118	0.979358	0	1.75189	0.684772	0.94887	0.714092	1.36326	0.374206	0.792382	0	0.642455	0	0.525433	1.49124	1.23323	0.395404	0.186953	0	0.814927	4.44079	3.64512	0	0.554009
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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