TCONS_00040915 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00040915
Unique Name	TCONS_00040915
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	757

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002623:15746..20052+

transcript sequence

>TCONS_00040915 ID=TCONS_00040915|Name=TCONS_00040915|organism=Clytia hemisphaerica|type=transcript|length=757bp
ccATTTGACACGTCTTCAAGAGGAAATCAAACAACAAGCATGGGAGATGG
TGCTACAGAATGTTACAATACACATGAATTCTCTTCCAATGATTCTTGAT
CCAGAAGGTATGGATATTGAACTACGAAAGAGTCATCTAAATACAGTCAA
GAATTTCAGAtggaaatttatattttgacgCAATTGATTGAGGAATTTGA
AAGTGAAGCTGCGAAACCTGACATGAATACCGATATTACAAAGAGAGGTA
AAGGATCTAAGAAGAAGTCGCATCAATCATGGGACTGGTCCAAAGAGAGG
AATCAGGTGTTGAGTGTTATCAACCAATTTTTGCAACTTGAACTCCAAAG
ATTGTGGGATCCACCCATTGTAGAAGAAGAATTCGCCAAtttgTTCAGTT
CCGTATGTTACAAAATACTGGAAAATCCTGTCGTGGTTcgtcaaaaagaa
gataaaGAATTGGTGATCAACATCCTCGGCCAGCTCATCAAACGATATAA
ACATCAACTAGGTGCCAGTATGAAAATGATTCAGCTGCTGCAACATTTCG
AGCATCTGGTGTCGCCTCTTGCACAAGCTATCACCACTTTCGTCACTGAT
TTTGGAGCCAAAAACCTTGTCAGTGATGTCATTAGGGAGATTGGTCGAAT
GGAATCGTCGGACTTATCACGTGATACGAGTGGCACGCGAGCTTTCTCAC
AGTTCTTGGTAGAATTAGCTGATAAAATACCAAACCAAGTGCTCCCAAAC
ATCAGTT

Run BLAST on NCBI

transcript from alignment at sc0002623:15746..20052+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00040915 ID=TCONS_00040915|Name=TCONS_00040915|organism=Clytia hemisphaerica|type=transcript|length=4307bp|location=Sequence derived from alignment at sc0002623:15746..20052+ (Clytia hemisphaerica)
ccATTTGACACGTCTTCAAGAGGAAATCAAACAACAAGCATGGGAGATGG
TGCTACAGAGTATGTTGACCTTGTTTTTAGAGATTTAGATAAAGTTATGA
TAGGACACAACATTATACAATGTGTTTATGTTCATTCATACTTACTAgct
cattcaattgttatttagATGTTACAATACACATGAATTCTCTTCCAATG
ATTCTTGATCCAGAAGGTATGGATATTGAACTACGAAAGAGTCATCTAAA
TACAGTCAAGGTAATGATAATTAGATTTCAAGGCATAAAGTACTTTTAGA
GACATTCTATAGTTAACACAAAAAGCGGTTGTTTGAAGAAGAATAAGTGA
ataaaaagacaatttaaattTTGCTTTATAAACATACATTAATTTCTGGC
TGAGGCTCATTATGCTTAGAAAATCTTCATGTAGCGCCAGTACTAATATG
TTGAACAGTGAAAAAGGATGCGgcttattatattttgattttcccCTACA
TGTTTCGGcctcggtccgttctcaagggaatcCACTCAACTAATACAAAG
GAGTACAGTATTTTATTTAAAGCtattgtaattttcaaaatattcgttGT
CTTCCTGTATAATTGATccctttttcaaaacaaatcatgAATCACCACAA
TTTAtttgcattttattttatttgacttGATTCTCTTTAGAATTTCAGAt
ggaaatttatattttgacgCAATTGATTGAGGAATTTGAAAGTGAAGCTG
CGAAACCTGACATGAATACCGATATTACAAAGGTGATTTTTCTCTTTGTT
CTCAACTTCAATGTGtgtattaattatttttgaggtTCTGTACATTCTTT
AGTACCTTTCGCTTTTGACCAAATGAGATTAAAATCTTAAAACTCTGTAA
ATGtgtaatattttaaaagatGATGTGGGTGCCCGTAGGGTCAATATAAT
ATACATGGTGATGTTTTTTCATattatttgatttgtttttttgtttgttt
ggggGGCATTGTTTGCATGTAAACAATAACCTCTATTTAATCTCTTTAGG
AAATtgcttttaaaaatgttcaaacCAATCAGATTTTACTCTTTACTTTA
GAGAGGTAAAGGATCTAAGAAGAAGTCGCATCAATCATGGGACTGGTCCA
AAGAGAGGAATCAGGTGTTGAGTGTTATCAACCAATTTTTGCAACTTGAA
CTCCAAAGATTGTGGGATCCACCCATTGTAGAAGAAGAATTCGCCAAGTA
atttgtttttcactttttcttctaCATGTCctttttgatttcatatctta
aGGTTTCGTTTAAAGAAAAGTTTTATGCTATAAGGCTCTGTAATGACACA
GCGATTATCTGCTTATTAAAAAGTTTATTAACATATGATTACAAAGTTGT
ATAGTTTATATAGTTGGACATAAAATATTGATGTTGAATATCCGGAATAC
CTTCttctaatttctttttcagtttgTTCAGTTCCGTATGTTACAAAATA
CTGGAAAATCCTGTCGTGGTTcgtcaaaaagaagataaaGAATTGGTGAT
CAACATCCTCGGCCAGCTCATCAAACGATATAAACATCAACTAGGTTAGA
GACAACATTAATTGTGCATCCAGTACATCTATTTTAGGACATTTCGTCTA
CTTCCTACCAGAGTAGGATGatgttcatttttcatttttcactttctccA
GTGTTCCTCAAGTACATTTTGGACATTATTTAAGTGCTGATTCCAAAAAT
TATGCTTATTTTGGGCTCGAATTTAATATAGATCATTTTACCTTTTGCAC
TGAATGCAATACTCTTGAACATTTGAACCATTTTTAACAAATAGTGGTTT
TTACAAACGTTATGTATGAAAGAGCAAGGGCATTAATCGATAATGCAATA
CCTTAGTATTTACCTTTTATTTTCACGCCTTTAGGATATTCTTTAATTTT
TGTGCATCTTGTAATTtctgggaaatttttttaagtgtttttgatGAGAA
ACGTAGTTAAAGAGGGCAAAAAACTATGAAATCAGGAGTTTTGCTCACTT
TTAGTTTGCATTTTAACCATTTCTTACATCCCAGGCATATATTTAAGGTA
AATTCGCTGGATTCTAGGATTTGGATTCAAAGATTCAGATTCGGATTCAG
GATTCgaaaaaagctttgtaaaaaaaattgaaagaagatattgacttcaa
accaaaagatcttgaaagattacATAACATAAAGCAAATCTTAAGAAAAA
CCGTTATCAATACGGGCAAGGCCTTGATGCTAATTTGGGAATTTCccctt
tttaggattcaaattgCCAGCATATTGCACACTTTGACTGGTTCCCAGTC
CCCTCATTGTATTCGGATCAAATTTTAGACACCGGATCTTATGGACTAGG
TGTTCTAGAAACTTGGGAAATCAATTTTTAACGATCCCAAACCAAAAACG
AATGCAAGGTTACATGAATTCACTAAATTTTTATATtgcaaaagtctttt
tttttctgcTAAGTTTACGAAGATcacaaattgtaaaaaaaactcccttt
ctctgtttttttttcaagttcttgGAATTATTTATAGCACCAGAAATGGT
ATGAACAATGTATAAACAAATTGAAACCAAAAAAAGACGCTTGAATCCCA
ATCCTGCAATCCAGCGAATCTATGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGCCCGTtttggaagattcttcctctttgggaa
gttgaaaattgactgaatcttggcgaagctgtacgatgaccggcgaaagt
tgaaactttttggaggtgaagaatcatcaaattttaaggtttttcaccga
aagaaaagttgactttaccgtagaaatcttgttaaattgtgaaaaaactg
cgtaaacttcccaaacgggaagttCCAACCCGATCGAGTTTTCCTTAGTT
CCTCGTTTCTTCCCGATCTGGAAGTCCGTTAACCCGTTTGGGTGTTaagt
taatttcccgttcgggaagattcttcccattacggaagaatcttccaatt
ttggaagaatcttcccgatcgagttagtggcacagactgctAGGTGTTCT
AGAAACTTAGGAAATCAATTTTTAACGATCCCAAACCAAAAACGAATGCA
AGGTTACATGAATTCACTAAATTTTTATATtgcaaaagtctttttttttc
tgcTAAGTTTACGAAGATcacaaattgtaaaaaaaactccctttctctgt
ttttttttcaagttcttgGAATTATTTATAGCACCAGAAATGGTATGAAC
AATGTATAAACAAATTGAAACCAAAAAAAGACGCTTGAATCCCAATCCTG
CAATCCAGCGAATCTATGGCTTACCCTAATTAGAGGACTCGTTTCTTAAA
AAGAGCGCTAAGATGCATTCCAACACATAATAATCACTAATTCACGCACA
CTTCGCACAGCCTAGTGAGCAAAAATTAATGGGATTAAGGTAACATTTTA
AGCCATTTTGATTTCAGGTGCCAGTATGAAAATGATTCAGCTGCTGCAAC
ATTTCGAGCATCTGGTGTCGCCTCTTGCACAAGCTATCACCACTTTCGTC
ACTGATTTTGGAGCCAAAAACCTTGTCAGTGATGTCATTAGGTAGGGTTT
ATTACACAAAGGCACCGGAcgaatattttattttgttgttgttcttACTT
actattctttgtatttttatgtACTTTTTTCTTAGGGAGATTGGTCGAAT
GGAATCGTCGGACTTATCACGTGATACGAGTGGCACGCGAGCTTTCTCAC
AGTTCTTGGTAGAATTAGCTGATAAAATACCAAACCAAGTGCTCCCAAAC
ATCAGTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_024968	XLOC_024968	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002623	supercontig	sc0002623:15746..20052 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	18.3838	25.227	18.1205	32.2769	14.1805	8.61759	2.12737	12.7298	6.54961	5.89772	0	0	0	0	0	0	0	0	0	0	11.6674	21.61	0.0761267	0.915594	0	0

Blast

[Close]

BLAST of TCONS_00040915 vs. Swiss-Prot (Human)
Match: CND1 (Condensin complex subunit 1 OS=Homo sapiens GN=NCAPD2 PE=1 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 7.050e-47
Identity = 80/196 (40.82%), Postives = 134/196 (68.37%), Query Frame = 1

Query:  154 FQMEIYILTQLIEEFESEAAKPDM-NTDITKRGKGSKKKSHQSWDWSKERNQVLSVINQFLQLELQRLWDPPIVEEEFANLFSSVCYKILENPVVVRQKE--DKELVINILGQLIKRYKHQLGASMKMIQLLQHFEHLVSPLAQAITTFVTDFGAKNLVSDVIREIGRMESSDLSRDTSGTRAFSQFLVELADKIP 732
             +M  Y L +L+E FE+ A++ ++ + D+  +GK ++ K+   +DW +ER  +L ++ Q LQL+++ LW+  I+EEEF +L +  CY++LENP +  QK    +E + ++LG  + RY H L A++K+IQ+LQHFEHL   L  A++ + TD+G K++V +++REIG+    +LSRD SGT+ F+ FL ELA+++P
Sbjct:  117 LKMNCYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLDIRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSATVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGFAAFLTELAERVP 312

The following BLAST results are available for this feature:

BLAST of TCONS_00040915 vs. Swiss-Prot (Human)

BLAST of TCONS_00040915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CND1	7.050e-47	40.82	Condensin complex subunit 1 OS=Homo sapiens GN=NCA...	[more]

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TCONS_00040915 (transcript) - C. hemisphaerica