TCONS_00040914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040914
Unique NameTCONS_00040914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length627

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040914 ID=TCONS_00040914|Name=TCONS_00040914|organism=Clytia hemisphaerica|type=transcript|length=627bp
agccATTTGACACGTCTTCAAGAGGAAATCAAACAACAAGCATGGGAGAT
GGTGCTACAGAATGTTACAATACACATGAATTCTCTTCCAATGATTCTTG
ATCCAGAAGGTATGGATATTGAACTACGAAAGAGTCATCTAAATACAGTC
AAGAtggaaatttatattttgacgCAATTGATTGAGGAATTTGAAAGTGA
AGCTGCGAAACCTGACATGAATACCGATATTACAAAGAGAGGTAAAGGAT
CTAAGAAGAAGTCGCATCAATCATGGGACTGGTCCAAAGAGAGGAATCAG
GTGTTGAGTGTTATCAACCAATTTTTGCAACTTGAACTCCAAAGATTGTG
GGATCCACCCATTGTAGAAGAAGAATTCGCCAAtttgTTCAGTTCCGTAT
GTTACAAAATACTGGAAAATCCTGTCGTGGTTcgtcaaaaagaagataaa
GAATTGGTGATCAACATCCTCGGCCAGCTCATCAAACGATATAAACATCA
ACTAGGGAGATTGGTCGAATGGAATCGTCGGACTTATCACGTGATACGAG
TGGCACGCGAGCTTTCTCACAGTTCTTGGTAGAATTAGCTGATAAAATAC
CAAACCAAGTGCTCCCAAACATCAGTT
Run BLAST on NCBI

transcript from alignment at sc0002623:15744..20052+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040914 ID=TCONS_00040914|Name=TCONS_00040914|organism=Clytia hemisphaerica|type=transcript|length=4309bp|location=Sequence derived from alignment at sc0002623:15744..20052+ (Clytia hemisphaerica)
agccATTTGACACGTCTTCAAGAGGAAATCAAACAACAAGCATGGGAGAT
GGTGCTACAGAGTATGTTGACCTTGTTTTTAGAGATTTAGATAAAGTTAT
GATAGGACACAACATTATACAATGTGTTTATGTTCATTCATACTTACTAg
ctcattcaattgttatttagATGTTACAATACACATGAATTCTCTTCCAA
TGATTCTTGATCCAGAAGGTATGGATATTGAACTACGAAAGAGTCATCTA
AATACAGTCAAGGTAATGATAATTAGATTTCAAGGCATAAAGTACTTTTA
GAGACATTCTATAGTTAACACAAAAAGCGGTTGTTTGAAGAAGAATAAGT
GAataaaaagacaatttaaattTTGCTTTATAAACATACATTAATTTCTG
GCTGAGGCTCATTATGCTTAGAAAATCTTCATGTAGCGCCAGTACTAATA
TGTTGAACAGTGAAAAAGGATGCGgcttattatattttgattttcccCTA
CATGTTTCGGcctcggtccgttctcaagggaatcCACTCAACTAATACAA
AGGAGTACAGTATTTTATTTAAAGCtattgtaattttcaaaatattcgtt
GTCTTCCTGTATAATTGATccctttttcaaaacaaatcatgAATCACCAC
AATTTAtttgcattttattttatttgacttGATTCTCTTTAGAATTTCAG
AtggaaatttatattttgacgCAATTGATTGAGGAATTTGAAAGTGAAGC
TGCGAAACCTGACATGAATACCGATATTACAAAGGTGATTTTTCTCTTTG
TTCTCAACTTCAATGTGtgtattaattatttttgaggtTCTGTACATTCT
TTAGTACCTTTCGCTTTTGACCAAATGAGATTAAAATCTTAAAACTCTGT
AAATGtgtaatattttaaaagatGATGTGGGTGCCCGTAGGGTCAATATA
ATATACATGGTGATGTTTTTTCATattatttgatttgtttttttgtttgt
ttggggGGCATTGTTTGCATGTAAACAATAACCTCTATTTAATCTCTTTA
GGAAATtgcttttaaaaatgttcaaacCAATCAGATTTTACTCTTTACTT
TAGAGAGGTAAAGGATCTAAGAAGAAGTCGCATCAATCATGGGACTGGTC
CAAAGAGAGGAATCAGGTGTTGAGTGTTATCAACCAATTTTTGCAACTTG
AACTCCAAAGATTGTGGGATCCACCCATTGTAGAAGAAGAATTCGCCAAG
TAatttgtttttcactttttcttctaCATGTCctttttgatttcatatct
taaGGTTTCGTTTAAAGAAAAGTTTTATGCTATAAGGCTCTGTAATGACA
CAGCGATTATCTGCTTATTAAAAAGTTTATTAACATATGATTACAAAGTT
GTATAGTTTATATAGTTGGACATAAAATATTGATGTTGAATATCCGGAAT
ACCTTCttctaatttctttttcagtttgTTCAGTTCCGTATGTTACAAAA
TACTGGAAAATCCTGTCGTGGTTcgtcaaaaagaagataaaGAATTGGTG
ATCAACATCCTCGGCCAGCTCATCAAACGATATAAACATCAACTAGGTTA
GAGACAACATTAATTGTGCATCCAGTACATCTATTTTAGGACATTTCGTC
TACTTCCTACCAGAGTAGGATGatgttcatttttcatttttcactttctc
cAGTGTTCCTCAAGTACATTTTGGACATTATTTAAGTGCTGATTCCAAAA
ATTATGCTTATTTTGGGCTCGAATTTAATATAGATCATTTTACCTTTTGC
ACTGAATGCAATACTCTTGAACATTTGAACCATTTTTAACAAATAGTGGT
TTTTACAAACGTTATGTATGAAAGAGCAAGGGCATTAATCGATAATGCAA
TACCTTAGTATTTACCTTTTATTTTCACGCCTTTAGGATATTCTTTAATT
TTTGTGCATCTTGTAATTtctgggaaatttttttaagtgtttttgatGAG
AAACGTAGTTAAAGAGGGCAAAAAACTATGAAATCAGGAGTTTTGCTCAC
TTTTAGTTTGCATTTTAACCATTTCTTACATCCCAGGCATATATTTAAGG
TAAATTCGCTGGATTCTAGGATTTGGATTCAAAGATTCAGATTCGGATTC
AGGATTCgaaaaaagctttgtaaaaaaaattgaaagaagatattgacttc
aaaccaaaagatcttgaaagattacATAACATAAAGCAAATCTTAAGAAA
AACCGTTATCAATACGGGCAAGGCCTTGATGCTAATTTGGGAATTTCccc
tttttaggattcaaattgCCAGCATATTGCACACTTTGACTGGTTCCCAG
TCCCCTCATTGTATTCGGATCAAATTTTAGACACCGGATCTTATGGACTA
GGTGTTCTAGAAACTTGGGAAATCAATTTTTAACGATCCCAAACCAAAAA
CGAATGCAAGGTTACATGAATTCACTAAATTTTTATATtgcaaaagtctt
tttttttctgcTAAGTTTACGAAGATcacaaattgtaaaaaaaactccct
ttctctgtttttttttcaagttcttgGAATTATTTATAGCACCAGAAATG
GTATGAACAATGTATAAACAAATTGAAACCAAAAAAAGACGCTTGAATCC
CAATCCTGCAATCCAGCGAATCTATGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGCCCGTtttggaagattcttcctctttggg
aagttgaaaattgactgaatcttggcgaagctgtacgatgaccggcgaaa
gttgaaactttttggaggtgaagaatcatcaaattttaaggtttttcacc
gaaagaaaagttgactttaccgtagaaatcttgttaaattgtgaaaaaac
tgcgtaaacttcccaaacgggaagttCCAACCCGATCGAGTTTTCCTTAG
TTCCTCGTTTCTTCCCGATCTGGAAGTCCGTTAACCCGTTTGGGTGTTaa
gttaatttcccgttcgggaagattcttcccattacggaagaatcttccaa
ttttggaagaatcttcccgatcgagttagtggcacagactgctAGGTGTT
CTAGAAACTTAGGAAATCAATTTTTAACGATCCCAAACCAAAAACGAATG
CAAGGTTACATGAATTCACTAAATTTTTATATtgcaaaagtctttttttt
tctgcTAAGTTTACGAAGATcacaaattgtaaaaaaaactccctttctct
gtttttttttcaagttcttgGAATTATTTATAGCACCAGAAATGGTATGA
ACAATGTATAAACAAATTGAAACCAAAAAAAGACGCTTGAATCCCAATCC
TGCAATCCAGCGAATCTATGGCTTACCCTAATTAGAGGACTCGTTTCTTA
AAAAGAGCGCTAAGATGCATTCCAACACATAATAATCACTAATTCACGCA
CACTTCGCACAGCCTAGTGAGCAAAAATTAATGGGATTAAGGTAACATTT
TAAGCCATTTTGATTTCAGGTGCCAGTATGAAAATGATTCAGCTGCTGCA
ACATTTCGAGCATCTGGTGTCGCCTCTTGCACAAGCTATCACCACTTTCG
TCACTGATTTTGGAGCCAAAAACCTTGTCAGTGATGTCATTAGGTAGGGT
TTATTACACAAAGGCACCGGAcgaatattttattttgttgttgttcttAC
TTactattctttgtatttttatgtACTTTTTTCTTAGGGAGATTGGTCGA
ATGGAATCGTCGGACTTATCACGTGATACGAGTGGCACGCGAGCTTTCTC
ACAGTTCTTGGTAGAATTAGCTGATAAAATACCAAACCAAGTGCTCCCAA
ACATCAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024968XLOC_024968Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040914-exon-sc0002623-1491911889:15744..15804TCONS_00040914-exon-sc0002623-1491911889:15744..15804Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1510915933:15744..15804TCONS_00040914-exon-sc0002623-1510915933:15744..15804Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1575043694:15744..15804TCONS_00040914-exon-sc0002623-1575043694:15744..15804Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1491911889:15914..16005TCONS_00040914-exon-sc0002623-1491911889:15914..16005Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1510915933:15914..16005TCONS_00040914-exon-sc0002623-1510915933:15914..16005Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1575043694:15914..16005TCONS_00040914-exon-sc0002623-1575043694:15914..16005Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1491911889:16444..16527TCONS_00040914-exon-sc0002623-1491911889:16444..16527Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1510915933:16444..16527TCONS_00040914-exon-sc0002623-1510915933:16444..16527Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1575043694:16444..16527TCONS_00040914-exon-sc0002623-1575043694:16444..16527Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1491911889:16847..16992TCONS_00040914-exon-sc0002623-1491911889:16847..16992Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1510915933:16847..16992TCONS_00040914-exon-sc0002623-1510915933:16847..16992Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1575043694:16847..16992TCONS_00040914-exon-sc0002623-1575043694:16847..16992Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1491911889:17218..17339TCONS_00040914-exon-sc0002623-1491911889:17218..17339Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1510915933:17218..17339TCONS_00040914-exon-sc0002623-1510915933:17218..17339Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1575043694:17218..17339TCONS_00040914-exon-sc0002623-1575043694:17218..17339Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1491911889:19931..20052TCONS_00040914-exon-sc0002623-1491911889:19931..20052Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1510915933:19931..20052TCONS_00040914-exon-sc0002623-1510915933:19931..20052Clytia hemisphaericaexon
TCONS_00040914-exon-sc0002623-1575043694:19931..20052TCONS_00040914-exon-sc0002623-1575043694:19931..20052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002623supercontigsc0002623:15744..20052 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.83272	7.36854	0.0305958	0	3.26442	1.51455	0.79053	0.810887	0.915218	0	0	0	0	1.75828e-05	1.60693	2.66366	0	1.69149	0	1.44684	0	1.10945	0	1.52028	0	0	2.42144	0	0	4.5893
Blast
[Close]
BLAST of TCONS_00040914 vs. Swiss-Prot (Human)
Match: CND1 (Condensin complex subunit 1 OS=Homo sapiens GN=NCAPD2 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 2.794e-27
Identity = 59/175 (33.71%), Postives = 104/175 (59.43%), Query Frame = 1 
Query:    4 HLTRLQEEIKQQAWEMVLQNVTIHMNSLPMILDPEGMDIELRKSHLNTVKMEIYILTQLIEEFESEAAKPDM-NTDITKRGKGSKKKSHQSWDWSKERNQVLSVINQFLQLELQRLWDPPIVEEEFANLFSSVCYKILENPVVVRQKE--DKELVINILGQLIKRYKHQLGRLVE 519
            H   +   +K+   + +++ V+ H   LP ILD   +    R +HLN +KM  Y L +L+E FE+ A++ ++ + D+  +GK ++ K+   +DW +ER  +L ++ Q LQL+++ LW+  I+EEEF +L +  CY++LENP +  QK    +E + ++LG  + RY H L   V+
Sbjct:   69 HFRSIDPGLKEDTLQFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMNCYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLDIRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSATVK 243
The following BLAST results are available for this feature:
BLAST of TCONS_00040914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CND12.794e-2733.71Condensin complex subunit 1 OS=Homo sapiens GN=NCA... [more]
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