TCONS_00040892 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040892
Unique NameTCONS_00040892
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040892 ID=TCONS_00040892|Name=TCONS_00040892|organism=Clytia hemisphaerica|type=transcript|length=510bp
ttagattaagaacaataaaatcaagaaaaacatgGAATCTTCACAAGCAA
GAAAGGtcattgaaattttggaaaacatAAATGGTGATCCATCTCGAGGC
GAGCTTAATATTGTCAGGAATTTCTTGCTGGCAAGAATTACCTTCGAAAA
TCCCAATAGAACTGGGGTATGCGCAAACATGACGATGAAGGAATACGAAA
ACGTACTCACCAAGGACGATCACAAGGTAATAAAGGTTCGAAAACACAAA
ACCTTTGACAAGGATGGTTATGCTCATGTTGCGATTTCCAACGAACTGTT
TCAGCTTCTCAAGTTGTACGTTGACAAAGTCCGTCCCACATTCAGCCGTC
CTGATTCCGAAAACGTATTTATTAGCTGTACCGGGCGCAGCATGGAATCC
AGTGCTATTAGTCAGATAATCAATCGGACTCTCGGCGGAgctcattaaat
ttttttttgtattactatagtaacattttccaaaaaaaatattttccatc
aaAGACACAT
Run BLAST on NCBI

transcript from alignment at sc0002616:16290..17100-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040892 ID=TCONS_00040892|Name=TCONS_00040892|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at sc0002616:16290..17100- (Clytia hemisphaerica)
TTAGATTAAGAACAATAAAATCAAGAAAAACATGGAATCTTCACAAGCAA
GAAAGGTCATTGAAATTTTGGAAAACATAAATGGTGATCCATCTCGAGGC
GAGCTTAATATTGTCAGGAATTTCTTGCTGGCAAGAATTACCTTCGAAAA
TCCCAATAGGTAAGTGCTCTTCTTTCGTCTGGCTCTTCCTAGAAAATGAT
GTAAGCGTTTATTTTTAGTTTATTTTCACTGACTTGATGCCCCTGTACCA
GTATCAGACCCACTTCACTTCTTAGGACAAGTTTCTTTCGCATTATTACG
CCCACTATCTTTCAAATACATTTATCGACTTTTTGCATAGTTCGATTTAG
ACGTTTATTTATTTTTTGTTCATTTATATCTCCATAATAAGAAAAAAAGA
CGGGAATTTATTTTTGATCCGCTACGATACTAATAAGCGTCAATTTTGAT
TTCGTTTTAGAACTGGGGTATGCGCAAACATGACGATGAAGGAATACGAA
AACGTACTCACCAAGGACGATCACAAGGTAATAAAGGTTCGAAAACACAA
AACCTTTGACAAGGATGGTTATGCTCATGTTGCGATTTCCAACGAACTGT
TTCAGCTTCTCAAGTTGTACGTTGACAAAGTCCGTCCCACATTCAGCCGT
CCTGATTCCGAAAACGTATTTATTAGCTGTACCGGGCGCAGCATGGAATC
CAGTGCTATTAGTCAGATAATCAATCGGACTCTCGGCGGAGCTCATTAAA
TTTTTTTTTGTATTACTATAGTAACATTTTCCAAAAAAAATATTTTCCAT
CAAAGACACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024954XLOC_024954Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040892-exon-sc0002616-1575043694:16942..17100TCONS_00040892-exon-sc0002616-1575043694:16942..17100Clytia hemisphaericaexon
TCONS_00040892-exon-sc0002616-1575043694:16290..16640TCONS_00040892-exon-sc0002616-1575043694:16290..16640Clytia hemisphaericaexon
TCONS_00040892-exon-sc0002616-1510915933:16942..17100TCONS_00040892-exon-sc0002616-1510915933:16942..17100Clytia hemisphaericaexon
TCONS_00040892-exon-sc0002616-1510915933:16290..16640TCONS_00040892-exon-sc0002616-1510915933:16290..16640Clytia hemisphaericaexon
TCONS_00040892-exon-sc0002616-1491911889:16942..17100TCONS_00040892-exon-sc0002616-1491911889:16942..17100Clytia hemisphaericaexon
TCONS_00040892-exon-sc0002616-1491911889:16290..16640TCONS_00040892-exon-sc0002616-1491911889:16290..16640Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002616supercontigsc0002616:16290..17100 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.266908	0	3.9869	5.07204	16.6403	18.2262	34.4256	22.1004	26.411	28.4298	9.64084	6.70362	0.267713	0.497409	1.27833	0.615991	0	0	0	0.262105	0	0.860053	1.7513	2.49273	0	0.0119064	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040892 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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